Plectropomus leopardus (leopard coralgrouper): 121962363
Help
Entry
121962363 CDS
T07454
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
plep00536
]
121962363
Glycosaminoglycan binding proteins [BR:
plep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121962363
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
121962363
NCBI-ProteinID:
XP_042368544
LinkDB
All DBs
Position
23:9263041..9435624
Genome browser
AA seq
695 aa
AA seq
DB search
MDIAEARGASKCVGKMEKEVAHQKRQYCRTTVLNIISSLCSVASIAFCILLSINTADIKS
RVVDLESGNDEHTFIRAPGYSMDDFNSLVEQRVDELLSQRSYENFVKIRTARQTSPECSC
PPGPPGKRGRRGRNGEPGPPGPPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRL
IKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGVPGLPGDPGQPGETGVMGPEGPQG
QKGALGPPGIPGVDGLKGDVGIPGLDGVPGAKGEMGERGEKGDMGEDGPKGDTGEKGDAG
SSAAGIKGEPGEPGRSGLKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGEKGD
HGPQGKGERGEIGPLGPKGSQGEAGTPGPKGSKGETGDKGDLGSIGPKGPPGQKGDQGAT
EIIDYNGNIQEALQKITTITVTGPPGPPGPIGPQGTKGDRGMPGLPGLDGERGYKGSKGD
MGMPGASGDKGTTGLPGLPGVNGVKGDKGDSGLPGPQGSSITGPPGPPGPHGPPGPMGPH
GFPGPKGEPGLHGVKGIRGEPGHKGDRGPLGLPGASGLDGKPGIRGMDGPAGPAGPAGPK
GDIGERGPAGEPGPRGPYGLPGAAGTPGLDGLPGLRGEKGDVGERGEKGFRGFKGEKGEP
GQPGLDGLDAPCQLGPDGLPMPGCWQKGVTPWLVA
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggacatcgcggaggcaagaggagcatctaagtgcgtgggaaaaatggagaaagaagtg
gcgcatcagaagcgacaatattgccgcacaacagtgctgaacatcatctcgtctttatgc
tccgtggcgtcaatcgccttctgcattctcctgagcattaacacagctgatattaagagc
cgggttgtggatttggagagtgggaatgacgaacacacctttatccgagccccgggctac
tccatggatgattttaattcattggttgaacaaagagtagatgagctgctctctcagcgc
tcctatgaaaattttgtcaagattcggactgccagacaaacatcacctgaatgcagctgc
cctccaggacctccgggaaagcgaggaagaagaggccgcaatggagaacctggacctcct
ggccctccgggtcccaagggtgaaaagggggatcaaggcgaccagggaccacggatggtc
ttccctaagatcaatcatggctttctttccgctgaccagcagctcataaagcggcggctc
attaagggagatcaagggcaagctggaccacctgggcctccggggccaccaggccctcca
gggccaagggggcccccaggtgacacagggaaagacgggcccagaggtgtacctggtcta
ccaggagatccagggcagcctggagaaacgggagtgatgggacctgaagggccacaaggg
cagaagggtgcacttgggcctcctggcatcccaggtgttgatggactgaagggggatgtt
ggcatcccaggactggacggtgtccccggagccaagggtgaaatgggagagcgaggtgaa
aagggcgatatgggtgaagacggaccgaaaggtgatacaggagagaagggtgatgcgggt
tcctctgcagcaggcatcaagggtgaacctggagagcctggacgaagtggactaaaggga
gagccaggacttccagggctgcctggactcccagggataaagggtgagcctggattcctc
ggtccccagggagagccagggctcccaggactcccaggaactaagggtgagaaaggtgac
catgggccacaaggaaagggtgaaagaggggaaattggacctcttggaccaaagggttca
caaggcgaagctggtacacctggtcctaaagggtcaaagggggagactggagataaagga
gacttgggatctattggcccaaaggggccccctgggcagaaaggagaccaaggagccact
gaaatcatcgactacaatggaaacattcaggaggctttacagaagattaccactattaca
gtaacgggtcctcctggacctcctgggccgataggaccacaggggacaaagggggatcgt
ggtatgcctggtctcccaggactcgatggtgaaagaggctacaaaggctccaaaggagac
atgggaatgcctggagcttcaggggataaaggaacaactggtttgcctggtctacctggt
gtcaacggggttaaaggagataagggcgattcaggtctacctggccctcaaggttcttca
atcacaggccctccagggccaccagggccccacggacccccaggacccatgggcccccat
ggattccctggaccaaagggggagcctggtttgcatggtgtaaagggtatccgaggggaa
ccaggacacaaaggggaccgcggaccactgggcctccccggagcctccggcttggacggc
aagcccggaattaggggtatggatggacctgctggtccagctggtccagctgggccgaag
ggtgacattggtgagagaggaccagcaggcgagccaggaccgaggggaccttatggacta
cctggagctgctgggacaccaggcttggatgggttgccaggcttaaggggagaaaaaggc
gacgttggggaaagaggagaaaagggtttccggggatttaagggtgaaaagggggaacca
gggcagccaggtctggacgggctggatgccccatgccaattgggcccggatggattacca
atgcctggatgctggcagaagggagtcacgccgtggctggtagcctga
DBGET
integrated database retrieval system
