Plectropomus leopardus (leopard coralgrouper): 121965067
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Entry
121965067 CDS
T07454
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03013
Nucleocytoplasmic transport
plep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121965067
03015 mRNA surveillance pathway
121965067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plep03019
]
121965067
Enzymes [BR:
plep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121965067
5.6.2.5 RNA 5'-3' helicase
121965067
Messenger RNA biogenesis [BR:
plep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121965067
mRNA cycle factors
Common to processing body (P body) and stress granule
121965067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
121965067
NCBI-ProteinID:
XP_042371172
LinkDB
All DBs
Position
3:complement(15524367..15543385)
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AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDEGLHNGGVDDSVAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNTAGRPSNMYFQTHDQIGMIGTGPSHMA
TMNLPIPFNLVMPPVPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSAHQGASQGNGP
NSQASQDGASQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctagacaccgaggaa
gcggagttgctcggagcagacacccagggctccgagtatgactttaccgacttcaccctt
cccagccagacgcaaactcaagggcagactcagagccagctggacagccaggtaaacggt
cccgatgagggtctacacaacggtggggtggatgactccgtggccaaagccagccagctg
ttggcagagctcaactttgaggaggatgaagaagacacgtactacaccaaagacctgcct
gtgcacgcatgcagttactgtggtatccacgatccagcttgtgtggtgtactgcaatacg
agcaagaagtggttctgtaatggacgtggcaacacatctggcagtcacattgtgaaccac
ttggtgagagcaaaatgcaaagaggtgacgctgcataaagatgggccgcttggtgagaca
gtgctggagtgttacaactgcggctgtcgcaacgtcttcctcctgggcttcatccctgcc
aaggctgattctgtggtggtgctactctgcaggcagccttgtgccagccagagtagcttg
aaggacatcaactgggacagttcacagtggcagccgctgatccaggaccgctgctttctg
tcctggctggtgaagatcccgtcagagcaggagcagcttcgagcccgtcagatcaccgcc
cagcagatcaacaagttggaggagctctggaaggacaaccccactgccaccctggaggac
ctggagaaacctggagtggacgaggagccccagcatgtgctgctgcgctatgaggacgcc
taccagtaccaaaacatctttggccctttggtcaaactggaggctgactacgacaagaag
cttaaggagtcccagacccaagacaatattacagtcaggtgggacctggggctgaacaaa
aagcggattgcctatttcacactacccaagacggattcaggtgatatgcggctgatgcaa
ggtgacgagatctgcttgaggtacaagggagacctggctccgctgtggaaaggcatcggc
catgtcatcaaagtccccgacaactatggggatgaaattgccattgagttgcggagcagt
gttggagcacctgtggaaatcccccacaatttccaggtggactttgtgtggaagtccaca
tcctttgacaggatgcagagcgccctaaagacatttgcggtggacgagacttccgtgtcg
ggctacatttaccacaaactgctgggccatgaggtcgaggatgtcaccatcaagtgccag
ctgccaaagcgcttcactgcccaaggcctgcctgacctcaatcactcacaggtgtatgct
gtgaagacagtgctgcagagacccctcagtctgatccagggtcctcctggcactgggaag
actgtcacctctgccactattgtctaccacctgtcccgacaaggcaatggaccggttctg
gtgtgtgctcccagtaacattgctgtggatcagttgactgagaagattgacaagaccgga
ctgaaggtcgtcaggctttgtgccaagagccgagaggccatcgagtcaccagtgtccttc
ttggctctgcataaccagatcagcaacatggacagtatgccggagcttcagaaacttcag
cagctgaaggatgagacgggcgagctgtcgtctgcagatgagaaacgctacagggctttg
aagcgcacagccgagagggagctgctcatgaatgctgacgttatctgttgtacctgtgtc
ggggctggagaccctcgcctggccaagatgcagttccgttccatcctgattgatgagagc
acccaggccactgagccagagtgtatggtgcccgtggtgcttggagccaagcagctcatt
ctggtgggtgaccactgccagctgggtcctgtggtgatgtgtaagaaagcagccaaagca
ggtctgtcccagtccctgtttgagcgcttggtggttctggggatccggccaatccgcctg
caggtccagtaccgcatgcacccggctctcagtgccttcccctccaacatcttctatgag
ggctccctgcagaacggcgtcactgcagctgaccgcatcaagaaagggtttgacttccag
tggccgcagccggacaaacctatgttcttctacgtgactcagggtcaggaggagattgcc
agttctggaacctcctaccttaacaggacggaggctgccaacgtggagaagatcaccacc
aggctgctgaaggctggagccaaacccgaccagatcggcatcatcaccccgtacgagggt
cagcgctcctacctggtgcagtacatgcagttcagcggctccctgcacaccaaactctat
cagcaagtggaaatcgccagcgtggacgccttccagggcagagagaaggacttcatcatc
ctgtcttgtgttcgtgccaatgagcaccagggcatcggcttcctgaatgacccacgtcgt
ctcaacgtggcactgacaagagccaagtatggcgtgatcatcgttggaaaccccaaagcc
ctctctaagcagccgctgtggaacaacctgctgaacaactacaaggagcagaaagtcctc
gtggaggggccgctcaacaacctgagggagagcctcatgcagttcagcaagccccgaaaa
ctggtcaacaccatcaaccctgggggccgttttatgagcactgcaatgtatgatgcccgt
gaagcccttatccctggctccgcctacgaccgcagcaataccgctggacgtccgtccaac
atgtactttcaaactcacgaccagattgggatgattgggacaggccccagtcacatggcc
acgatgaatcttcccatacccttcaacttggtgatgccaccagtgcctccgcccagttac
ctgggtcagaccaatggccctgctgcaggtcgtggagctatgaagggtaagcctgggcgt
ggcgggcgacagagggtccgtggatcagcacaccagggtgccagtcagggtaacggacca
aacagccaggccagccaggacggggcctcccagcccttctcccaggggccgctgacacag
ggctacatctccatgagtcagccgtctcagatgagccagcctggcctctcccagcccgag
ctgtcccaggacagctacctgggcgatgagttcaagtcccaaatcgatgtggctttgtcc
caggactcgacttaccagggtgaacgtgcgtaccagcatggtggggtgactggactgtca
cagtactag
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integrated database retrieval system
