Phaethon lepturus (White-tailed tropicbird): 104613836
Help
Entry
104613836 CDS
T08325
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
Pathway
plet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104613836 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plet03019
]
104613836 (EDC4)
Messenger RNA biogenesis [BR:
plet03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104613836 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
104613836 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
WD40_CDC20-Fz
Beta-prop_HPS5
Beta-prop_TEP1_2nd
WD40_Prp19
NBCH_WD40
WDR55
Motif
Other DBs
NCBI-GeneID:
104613836
NCBI-ProteinID:
XP_010295228
LinkDB
All DBs
Position
Unknown
AA seq
1375 aa
AA seq
DB search
SVNENQRPSNSYNGDLNGLLVPDPIVAGDGPSLIKPVHRSVSLGALQEKQVICLSGDDSS
TCVVISAKDVEIMASSDSSITSKARGSNKVKIQPVARYDWEQKYYYGNLIAVSNSYLAYA
IRAASNGSAMVRVLSVSTAERTLLKGFTGGVADLAFAHLNSNQLACLDEAGNLFVWRLAM
DKEKIQEEILVNIKRPDNTPLNTSRRIIWCPFIPDDNEESGEEGSQTLALLHEDRAEVWD
LDIIRTNNSSWPVEVPSIKEGFIVVKGHSTCLSEGALSPDGTVLATASHDGFVKFWQIYI
EGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQDPEVPFWRFLITGADQNRELKMWCTVSW
TCLQTVRFSPDIFSSMSILPSLKVCLDLSAEYLILSDVQRKVLYVMELMQNQEEGKAYFS
SISEFLLTHPVLSFGIQAVSRCRLRHTEVLPAEEENDNLSVEGVQGAGAVESAAGVLIKL
FCVHTKALQDVQIRFQPLHSPDMSASMPSHGSHEEFAFPDHMADLSTEGLGSEKGSVHGS
QPDLRRIADLPVPADFLSLSNDAKPKLMTPDAFMTPSTSLQQIAVSPGSSVSSLTAVTAM
SSTSVTDASMPRPSEDLTVSPKMQLDTSLTLSSSSSSLQTSPRSHSVLIPGLPDKLTPKA
PVPVTPGNPSLALELQEVEPLVVPQASPTRERSPDVISSASTAMSQDIPEIASETLQRSF
AAAPSGLPAEVLEPSHHADSMASAASALHLLSPRNRHNSDHSHHSLDMPPVEVDRLNAPS
LLETALTQENASSDSVVSQPWPAAPDITRETRNSMADSPRDEVEEKHKSSSYHRHSYHLL
QHDSQDASAEQSDHDDEVASLASTSGGFGAKASTQRLPVKDWKAKASPRASPKLKRKGKK
DDGDVNQSPRSSNNQVTPEFQDELMCILRSQQRELSELRQNQMELLQRLTDHLDAIQSSL
MGHVERVIDSQQEQEQRRLDRALTEGQQRNGQLQEHLSQQLSQSLSTAVCNRLERTIREE
MKKTIPQCISKSMDPIASQLSNTIAAKLTAVEGTLKESITKLVKSKSLTDSVVRATADTL
QGPIQSAYKEAFQSIVLPAFEKSCQSMFQQINDTFKQGTQEYIQQLETHLKNKKVREQEA
REPLLNQLRQLITTFQSSTEQLASSVAASVHAEVQHQLHIIVGNMQESILAQVQRVIKGE
VSLAMKEQQAAVTSSIVQAMRSAAGTPIPSAHLDFQSQQTHILQLLQQGHLNQAFQQALT
AADLNLVLYVCETVDTQQVFGQHPCPLSQPVLLSLIQQLSSDLGTRTELKLNYLEEAVMH
LDHSDPITRDHMGSVMNQVRQKLFQFLQVEPHNTLSKPARRLMIMLQGLVTPGMT
NT seq
4130 nt
NT seq
+upstream
nt +downstream
nt
gttcagtgaatgagaaccagagaccgtcaaattcatataatggagacctgaatggactgc
tggtgcctgatcccattgtggctggagatggaccttctttgattaagccagtgcatcgca
gcgtttctctgggagccctgcaggagaagcaagtcatctgcctttccggtgatgacagct
ccacttgtgtagtgatatcagcaaaagatgtggagataatggccagcagtgattccagca
tcaccagcaaggccagagggagtaacaaggtgaaaatacagcctgttgctagatacgact
gggagcagaaatactattacggcaatctgatagctgtttcaaactcttacctggcttatg
ccattagagctgccagtaatggctccgctatggtgcgggtgttgagcgtcagcactgctg
agcggaccttgctgaaaggattcacaggcggtgtggcagacctggcttttgctcatctca
actccaaccagctggcatgcctggatgaggccggcaacctttttgtctggcgcctggcca
tggataaagagaaaatccaagaggagatcttggtgaacatcaagcgacctgacaataccc
cgttgaacacctctcgaagaatcatctggtgccctttcatcccagatgataatgaggaga
gtggtgaagagggcagtcagacgttggcgttgttgcatgaggacagggcagaggtgtggg
atttggacattatccgaacgaacaacagctcctggcctgtggaagtgcctagcatcaaag
agggcttcattgtagtgaaaggccacagcacgtgtctgagcgagggagcactttctccag
atggaactgtgttggccacagcaagccatgatggttttgtcaaattctggcagatctata
ttgaggggcaagatgagccaaggtgtcttcatgagtggaaaccccatgatggtaggcctc
tttcctgcctgctcttctgtgacaaccataaaaaacaagacccggaggttcccttctgga
gatttctcataacaggagcagatcagaatagagaactgaagatgtggtgcactgtgtctt
ggacctgtctgcaaactgtccgcttttctcccgacatcttcagctccatgagtattcttc
ccagcctaaaagtctgcctggacctctccgctgaatatctgatactgagtgatgtgcaga
gaaaagtcttgtatgtgatggagctgatgcagaaccaagaggagggcaaagcttatttca
gctccatctcagagttcctccttacccacccagtcctaagctttggcatccaggcagtga
gccgctgccggttaaggcacacggaagtgcttccagcagaagaggaaaatgacaacttga
gtgtagaaggtgttcagggagctggggctgttgaatcagcagcaggcgtgctgataaaac
tcttctgtgtgcacaccaaggccctacaggatgtgcagattagattccagcctcttcata
gccctgacatgagtgcatccatgccttcccatggctcgcatgaagaatttgcctttccag
accatatggctgatctaagtacagaagggctgggatctgaaaaaggatcggtgcatggct
ctcaaccagacctgcggcgtattgctgatctgcctgtaccagcagactttctgtctctct
caaatgatgccaaacctaagctgatgactccagatgcattcatgacaccaagtacatctc
ttcaacagattgccgtatctccaggcagcagcgtcagttccctgactgcagtcacagcca
tgagtagcacttctgtcacagatgcctccatgcccaggccatcggaggacttgactgtga
gccccaagatgcagctggataccagcctcacgctgagcagcagcagcagcagtctccaga
ctagtcctaggagccattcagttcttatcccaggcctccctgacaagctaacaccaaagg
cacctgttccagtcacgccaggaaacccctctctagcactagaactgcaggaggtggagc
ctttggtggtgccccaggcttctcccacccgtgagcgctcgccagacgtcatttcctctg
cttccacagccatgtcccaagatatcccagagattgcttccgagaccttgcaacgcagct
ttgcggcagctccgtctggactccctgcggaggtgctggagcccagtcatcacgcagaca
gtatggcatccgctgcctcagccttgcatttgctgtctccgaggaaccggcacaactcag
accacagccaccactctttggacatgcctccagtggaggtggacagactgaatgctccat
cgttactggagactgctttaactcaggaaaatgcatcttctgacagtgttgtgagtcagc
catggccagcagctcctgacataaccagagaaaccaggaacagcatggcagacagcccaa
gggatgaggttgaagaaaagcacaagagctcttcctatcatcgacacagctaccacctgc
tgcagcatgacagccaggatgctagtgcagaacaaagtgaccatgatgatgaagttgcaa
gcttggcttctacgtcaggtggatttggtgccaaagcgtctacgcagaggctgcctgtga
aggactggaaagccaaggcatcccctcgggcttccccaaagctaaagcggaagggcaaga
aagatgacggggatgtgaaccagtcaccaagatcatctaacaaccaggtgacaccagagt
tccaggatgagctgatgtgcatattgaggagccaacagcgggagctctctgagctgcgtc
agaaccagatggagctgctgcagagactcacagatcaccttgatgccattcagagctccc
ttatgggccacgtggagagggtgattgactcccagcaggagcaggagcagagaagactag
accgagcgctgacggaaggacagcagcgcaatgggcagctccaggagcatctgtctcagc
agctctctcagtccctctccactgctgtgtgtaaccgtctggagaggactattcgtgagg
aaatgaagaagaccataccccagtgcatttccaagagcatggaccctattgctagccagc
tgagtaacactattgctgccaagcttactgcggttgaagggacactgaaggagagtatca
ccaagctagtgaaatcaaagagccttacagacagcgttgtgagggcaacggccgataccc
tgcaggggcctatccagtcagcttacaaggaagcgtttcagagcatcgtgttgccagcct
tcgagaagagctgccagtccatgttccagcaaatcaatgacaccttcaagcagggcacac
aggaatatatccaacagcttgagactcacttgaagaacaagaaggtacgagaacaggagg
ctcgggaaccactgctgaatcagcttcgacagctcatcaccaccttccagagctccacgg
agcagctggcttccagtgttgcagccagcgtccatgctgaggtgcagcatcagctgcata
ttatcgtgggcaacatgcaggagtctattttggcccaggtgcagagagtcattaaaggag
aagtgagcctggctatgaaggagcagcaagcagctgtcacctcgagcatcgtccaggcaa
tgcgctcagcggccgggactcccatcccctctgctcacttggatttccagtcccagcaaa
ctcacatccttcagctgctccagcagggacacctcaaccaagctttccagcaggctctaa
cagcagctgatctcaacctggtcctgtatgtctgtgagactgtggatactcagcaagtat
tcggacagcatccgtgcccgctgtcccagcctgtgctcctctccctcattcagcagctct
cctcggatttgggtactcgtacggaactgaagttgaattacttggaggaagcggtgatgc
acctggaccacagtgaccccatcacccgagaccacatggggtcagtcatgaaccaggtgc
ggcagaagctcttccagttcctgcaggtggaaccccacaacacgctgagcaagcctgccc
gtcgccttatgatcatgctccagggcctggtcacgcctggcatgacctag
DBGET
integrated database retrieval system
