Phaethon lepturus (White-tailed tropicbird): 104616756
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Entry
104616756 CDS
T08325
Symbol
COL5A1
Name
(RefSeq) collagen alpha-1(V) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
Pathway
plet04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
plet00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104616756 (COL5A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
plet00536
]
104616756 (COL5A1)
Glycosaminoglycan binding proteins [BR:
plet00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104616756 (COL5A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
ConA_2nd_BAM2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
104616756
NCBI-ProteinID:
XP_010280174
LinkDB
All DBs
Position
Unknown
AA seq
1803 aa
AA seq
DB search
EPADLLKVLDFHNLPDGITKTTGFCTSRRSSKEADVAYRVTKDAQLSAPTKQLYPASPFP
EDFSILTTVKAKKGGQSFLISIYNEQGIQQIGVEMGRSPVFLYEDHTGKPGPEDYPLFRG
INLADGKWHRVAISVQKKNVTLILDCKKKITKFLDRSDHPIIDVNGIIVFGTRILDEEVF
EGDIQQLLIVADPRAAHDYCEHYSPDCDTAVPDSPQSQDPNQDEYYTDGEGEGDTYYYEY
PYYEDVDEAVKPEVPTTKPGTPEVAAGERPETKQDYPAPTTSPGGGDAGKLTKGDAVVDD
PLVDEYNYETINEEYFTPLPYEDVNYNEEVDPQGGLTENAVEAELPTSTVMTYNETDAAQ
GGDDLDKDFTEETIKEYDGNYYDNYYDRTVSPDIGPGMPANQDTIYEGIGGPRGEKGQKG
EPAIIEPGMLVEGPPGPEGPAGLPGPPGPTGPVGLMGDPGERGPPGRPGLPGADGLPGPP
GTMLMLPFRFSGGGDAGSKGPLVSAQEAQAQAILQQARLALRGPAGPMGLTGRPGPMGPP
GSGGLKGEAGEMGPQGPRGIQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLA
GLPGEKGNRGEPGPHGPPGAPGEDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPP
GVAGMDGQTGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMP
GADGPPGHPGKEGPPGEKGSQGPPGPQGPIGYPGPRGVKGADGVRGLKGTKGEKGEDGFP
GFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRSGPNGDPGPLGPAGEKGKLGVPGLPGYP
GRQGPKGSIGFPGFPGANGEKGTRGTPGKPGPRGQRGPTGPRGERGPRGSTGKPGPKGNS
GGDGPPGPPGERGPPGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPP
GVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLTGKEGTKGDPGPAGLPGKDGPPGLR
GFPGERGLPGPIGAPGLKGNEGPPGPPGPAGSPGERGPAGSAGPIGLPGRPGPQGPPGPA
GEKGAPGEKGPQGPAGRDGIQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQ
GPPGPTGPQGPIGQPGPAGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPP
GEKGETGDVGQMGPPGPPGPRGPSGPPGADGPQGPPGGIGNPGAVGEKGEPGESGEPGLP
GEVGLPGPKGERGEKGEAGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPA
GQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLE
GPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDS
GPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSAGPKGEQGITGPSGPIGPPGPPGLP
GPPGPKGAKGSSGPTGPKGESGLPGPPGPPGPPGEVIQPLPIQSSKRTRRNIDASQLVDD
GNTDNYMDYADGMEEIFGSLNSLKLEIEQMKHPLGTQHNPARTCKDLQLCHPDFPDGEYW
VDPNQGCSRDSFKVYCNFTAGGETCIFPDKKSEGSKMARWPKEQPSTWYSQYKRGSLLSY
VDSDGNPIGVVQMTFLRLLSASAHQNITYNCYQSVAWHDATTDSYDKAIRFLGSNDEEMS
YDNNPYIRATLDGCAAKKGYQKTILEINTPKVEQVPIVDIMFNDFGEASQKFGFEVGPAC
FMG
NT seq
5414 nt
NT seq
+upstream
nt +downstream
nt
ctgaacctgcagatctcttgaaggtattagattttcataatttacctgatggtataacaa
aaacaacagggttttgcacaagcagaagatcttcgaaagaagcagatgttgcttatagag
taacaaaagacgctcagcttagtgcaccgacaaaacagctgtatcctgcttccccattcc
cagaggacttctccattctaaccactgtaaaagcgaagaaaggaggtcagtccttcttga
tctcaatttacaatgagcaagggatccagcaaattggtgtggagatgggtagatctcctg
tattcctgtatgaagaccatacaggaaagccaggcccagaagactatcctctctttagag
gcattaacctagcagatggcaagtggcacagagtagctatcagtgtgcagaagaaaaatg
tcactttgattttggactgtaaaaagaagataaccaagttcttggaccgaagtgaccatc
ccatcattgatgtcaatggcattattgtgtttggaacaaggatattggatgaggaagtct
ttgagggcgacatccagcagctcctgatcgtggcggacccccgagcagcccacgattact
gcgaacattacagccccgactgcgacaccgccgtccccgactccccccagtcccaggacc
ccaaccaggatgaatattatacagatggggagggagaaggtgacacctactactacgagt
acccctactatgaagatgttgatgaagctgtaaagccagaagtacccaccaccaaacctg
gcactcctgaagtggctgctggagagagacctgaaaccaagcaggactatcctgccccta
caacctcacctggtggaggggacgctggcaagctgacaaaaggggatgctgtggtggatg
accctctcgtggatgagtacaactatgaaaccattaacgaagaatacttcacgcctctcc
cctatgaagatgtcaactacaacgaagaagtagacccccagggcggactcactgaaaacg
ccgtggaagctgaactccccacaagtaccgtcatgacctacaatgagactgatgctgctc
aaggaggagatgatttggataaagatttcaccgaggaaacaataaaagaatatgatggaa
attattacgataactattatgaccgaacagtgtctcccgatattggccccggcatgcctg
ctaaccaggacactatctacgaagggatcggtggcccacggggcgagaaaggacagaagg
gggagcctgcgattattgagccgggtatgctggtggaaggcccacctggtcccgaaggcc
cagcaggccttccaggacctccaggaccaactggacccgtgggcttaatgggtgaccctg
gggagagaggaccacctggccgcccaggtcttccaggagcagatggtttaccaggaccac
cagggacaatgcttatgttgcctttccgctttagtggaggaggagatgctggctctaaag
gacctctcgtttcggcccaggaggcccaagcccaagccatcctgcagcaggccaggctgg
cgctgagaggaccagcaggtccaatgggtctgacggggcggccgggccccatgggacctc
cgggcagtggtggactaaagggagaagctggagaaatgggacctcagggtccacgaggca
tccagggtcctcccggtccggcaggaaaaccaggccgcaggggacgagctggcagcgacg
gtgcccggggcatgccaggccagacaggaccaaagggtgaccgagggtttgatggcttgg
ctggtttgcctggtgagaagggaaatagaggtgagccaggcccccatggacccccagggg
cgcccggagaggatggggagaggggagatgatggagaagttggacccagaggcctacctg
gagaacctggaccccgaggactgctgggaccgaaggggccacccggacccccggggccac
cgggtgtggctggtatggacggacaaacaggtcccaaggggaatgtgggtcctcaaggtg
agccaggtcccccaggacagcagggtaacccaggtgctcagggtcttccaggtccacaag
gcgcgattggtcccccaggagagaaagggccgctgggcaaacctggtcttcctggcatgc
ctggtgcagatggtcctccgggtcatcctggcaaggagggtcctcctggagagaagggca
gtcagggtccaccaggtcctcagggccccatcggttatccaggaccacgcggagtcaagg
gagcagatggcgttcgtggattgaaaggcaccaaaggtgaaaagggagaagatggtttcc
ctggctttaaaggtgatatgggcatcaaaggagaccggggagaaattggacctcctggcc
cccgaggtgaggatggtcctgaaggtcccaaaggtcgctctggccccaatggagatcctg
gtcctcttggtcctgctggagagaagggaaaactcggcgtgccaggactgcccggctacc
caggcaggcagggcccaaagggctcaatcggcttcccaggatttccaggagccaacggag
agaagggcacacgggggacacctggcaagccaggcccaagggggcagcgcggtccaacgg
gtccacgtggggaaagaggccctaggggaagcactgggaaacctggcccaaagggcaact
ctggtggtgatggcccccctggtcctcctggcgaaaggggacctccagggcctcaaggac
cgactggatttcctggaccaaaaggcccccctggtcctcctgggaaggatggattgcctg
gtcaccccggacagagaggagaaacaggtttccaaggcaagaccggccctccaggacccc
ctggtgtcgtaggccctcagggtccaactggtgaaactggaccaatgggtgagcgaggac
atccaggccctccaggtcccccaggtgaacaaggtcttcctggcctcactggaaaagaag
ggaccaagggagaccctggtcctgccggcctcccagggaaggatggtcccccgggcttgc
gaggcttccccggagagagaggtcttcctggccccattggtgctccagggctgaaaggca
acgaaggtcccccaggccctccaggtccagcaggctctcccggtgagcgcggtcctgcgg
gatcagctggcccgataggcttgccagggagacctggcccccagggacctccaggacccg
caggtgaaaagggagccccaggcgagaagggtcctcaaggaccggctggccgggatggca
tccagggcccagtgggactaccaggtccagcaggtcccgtcggccctcccggagaggatg
gagacaagggcgagatcggggagcctggccagaagggcagcaagggtgacaaaggggagc
agggtccaccaggtcctactggcccacagggtccaattggtcagcctggcccagctggtg
ccgatggagagccaggtcccagaggacagcaaggcctctttggtcagaaaggtgatgaag
gaccccgaggtttccctggtccccctggcccagtgggcttgcagggcttgcctgggccac
ctggtgagaagggagaaacaggtgatgttgggcaaatgggtccgcccggcccacctggac
ccagaggtccatctggaccaccaggagcagatggtccacagggtcctcctgggggaatag
gaaatcctggtgcagtaggagagaagggtgaacctggtgaatctggtgagcctggtcttc
ccggcgaggttggcctcccgggtcctaaaggtgaaagaggtgaaaagggtgaagcaggtc
cctctggtgctgctggtccacctggccctaaaggtccaccaggcgacgatggtcccaaag
gcagccctggtccggttggtttccctggtgaccctggtcctcctggagaacctggtccgg
ccggtcaagatggtccccctggtgacaaaggggatgatggtgaacctggacagactggtt
cccctggtcccacgggagagccaggcccctccggacccccggggaaaaggggccctcctg
gtccagctggtcctgaaggaaggcaaggggagaaaggagccaagggtgaagctggtttgg
aaggacctcctgggaagactggcccaattggtcctcaaggtgctccagggaagcccggcc
ccgatggccttcgagggattcctggtccagtcggtgaacaaggtcttccgggatcccctg
gcccagatggtcctccaggcccaatgggcccaccgggtttgcctggtcttaaaggagact
ctggccctaaaggggagaagggtcacccaggtttaattggtcttattggaccgccgggag
agcagggagaaaagggtgacagaggtctcccaggcccccagggctcagcaggacccaaag
gagagcagggtatcacaggtccttctggaccaatcggacctccagggccaccaggattac
cgggtccgcctggtcccaaaggtgctaaaggatcatcaggtccaacaggtccaaagggtg
aatcaggtcttcctgggcccccagggcctcctggtcctcctggggaagttatccagccat
tgcctatccagtcttccaagaggaccaggagaaacattgatgccagccagctggtggacg
atggaaataccgacaactacatggactatgcggatggcatggaggaaattttcggctcgc
tgaattccttgaaactggaaatagaacaaatgaagcatccattgggcactcaacataacc
cagcacgtacctgcaaggatctgcagctctgtcaccccgatttcccagatggtgaatact
gggttgatcctaaccaaggatgttccagggactctttcaaagtttactgtaatttcacag
ctggtggagagacttgcatcttccctgataagaaatctgaaggaagtaaaatggctcgtt
ggcccaaagaacagccttccacatggtatagtcagtacaagcgggggtctttgctctcct
atgtggattcggacgggaaccccattggcgtggtgcagatgactttcctccggctcctga
gcgcttcggcccaccagaacatcacctacaactgctaccagtccgtagcctggcacgacg
ccaccaccgacagctacgacaaggccatccgcttcctgggctccaacgacgaggagatgt
cctacgacaacaacccctacatccgagccaccctcgatggctgcgcggcaaagaagggct
accagaagactatcctggaaatcaacacgcctaaagtagagcaagtacctatagtcgaca
tcatgttcaatgacttcggagaagcatcacagaaatttggattcgaggtgggaccagctt
gcttcatgggctaa
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integrated database retrieval system
