Phaethon lepturus (White-tailed tropicbird): 104616929
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Entry
104616929 CDS
T08325
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
Pathway
plet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104616929 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
plet03041
]
104616929 (PRPF8)
Spliceosome [BR:
plet03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104616929 (PRPF8)
Complex C
U5 SnRNP specific factors
104616929 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
104616929
NCBI-ProteinID:
XP_010280401
LinkDB
All DBs
Position
Unknown
AA seq
2317 aa
AA seq
DB search
CAPVPSPLTPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKEDMPPEHVRKII
RDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLYHITGAISFVN
EIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNILDVEPLEA
IQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRYTLYRLANQLLTDLVDDNYFYLF
DLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDINKIIIRQPIRTEYKIAFPY
LYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPISHRHSVKSQEPLPDDDEEF
ELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRRALDIPLVKNWYREHCPAG
QPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATKFFQSTKLDWVEVGLQVCR
QGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLTKLVV
DSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNT
GPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVE
SHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPTPIENM
ILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDG
PYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQ
SQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSHLVPVYDVEPLEKIT
DAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGINNLQDVWETSEGECNVMLE
SRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFAS
FIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATEVAHPIRLFCRYIDRIHIF
FRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIK
NRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKCRTSYEEFTHKDGVWNLQN
EVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAV
VNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQS
DLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIA
QNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQ
RHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKWKKL
TNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFR
AHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFASYKWN
VSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSP
TGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEP
TEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLF
LKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLD
FPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLIL
ILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILADYGKKNNVN
VASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLTATQTRTVNKHGDEIITST
TSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICIS
DLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPGQLPQHEYLKEMEPLGWI
HTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWG
RQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWNYNFMGVRHDPNMKYELQL
ANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
6954 nt
NT seq
+upstream
nt +downstream
nt
tgcgccccggtgcccagcccgctgacgccgctgcccgactacatgtctgaggagaagctg
caggagaaagcccgcaagtggcagcagctgcaggccaagcgctatgcggagaagagaaaa
ttcggcttcgtggacgcgcagaaggaggatatgccccccgagcacgtccggaagatcatc
cgtgaccatggcgacatgaccaacaggaagttccgtcacgacaagcgcgtctacctgggt
gctctgaagtatatgcctcatgctgttctgaagctcttggagaacatgcccatgccctgg
gagcaaatcagagatgttccggttttgtaccatatcacaggcgccatctcttttgtgaat
gagattccctgggtcatagagcccgtgtacattgctcagtgggggtcgatgtggattatg
atgaggcgggagaagagagataggcgtcacttcaagaggatgagattccccccgtttgat
gatgaagaaccccctctggattatgctgataacatactggatgtggagcccctggaagca
attcagcttgagctggatccagaggaagatgctcctgtgctggactggttctatgaccac
cagccgctgaaagacaacaggaagtacgtaaatggttcaacgtaccagcgttacacgctg
taccggctggccaatcaactgctcactgaccttgtggatgacaactatttctatttgttt
gacctgaaagcgttctttacctccaaggcactgaacatggctattcctggaggtcctaag
tttgagcctcttgttagagacatcaatcttcaggatgaagactggaatgaatttaatgac
atcaacaaaattatcatcaggcagccgatcaggacagagtacaaaatcgctttcccatac
ctgtacaataacttgccacaccatgtccacctgacctggtatcatactccaaacgtcgtt
ttcattaagacagaagatcctgatctcccagctttttactttgatccactgatcaacccc
atttcacacagacattctgtcaagagtcaggaacctttgcctgatgatgatgaagagttt
gagttgccagagtttgtggaacctttcctgaaggatacccccctctatacagataacaca
gccaacggcattgccctgctgtgggccccacggcccttcaacttgaggtctgggaggact
cggagggctcttgatatcccactggtcaagaactggtatcgtgagcactgcccagcaggc
cagccagtgaaagtgcgagtctcctatcagaagctcctgaaatactatgttctgaatgct
ctcaagcacagacctcccaaggcccagaagaagaggtacctgttccgctccttcaaggct
acgaagtttttccagtcgacgaagctggactgggtggaagtaggcctgcaggtgtgtcgc
cagggctacaatatgctgaacttgctgatccacagaaagaacctgaactaccttcactta
gattacaacttcaacctgaagcctgtgaagaccctcaccactaaggaaaggaagaaatct
cgttttggtaatgctttccatctgtgccgagaggttctacggctgacaaagttggtggtg
gacagtcatgtccaatacagacttggaaatgtggatgcgtttcagttggcagatggcttg
cagtacatctttgcccacgtgggtcagctgacaggaatgtaccgatacaagtacaaacta
atgaggcagattcgtatgtgcaaggacctgaaacatctcatctactacaggtttaacaca
ggacctgtgggcaaaggtcctggctgtggcttctgggctccaggctggagagtgtggctg
ttcttcatgaggggcatcacgccgctgctggaacgctggctggggaatctgctggccagg
cagtttgaaggccgtcactcaaagggtgtagcaaagactgttacaaagcagcgtgtggag
tctcactttgacctggagctgagggcagctgttatgcatgacattctggacatgatgcca
gaaggaatcaaacagaacaaagccagaaccatcctgcagcatctgagcgaggcctggcgg
tgctggaaggccaatatcccttggaaggtgccagggctgccaactcctattgaaaacatg
atcctgaggtacgtgaaggcaaaagctgactggtggacaaatacagctcactacaacagg
gagcggatccgtcggggtgccactgtagacaaaactgtctgtaagaagaatctcggccgg
ctgaccagactctacttaaaagctgagcaggaacgacagcataattacttgaaggatgga
ccttacatcaccgcagaagaggctgttgctgtgtacacaaccacagtgcactggctggaa
agcagaaggttctcgcccattcccttccccccactgtcttataagcatgacaccaagttg
ctcatattagccctggagaggctgaaggaagcttacagtgtgaaatctcgcctgaatcag
tcgcagagagaggaattgggcttgattgaacaggcttatgataatcctcatgaagctctg
tccagaatcaagcgacaccttttaacacagagagccttcaaggaggtgggtattgagttc
atggatctctacagccacttggttcctgtttatgatgttgagcccctggagaaaatcaca
gatgcttatctggatcagtacttgtggtatgaggctgataagcgaagactcttccctccg
tggatcaaacctgctgacactgaacctcctccactgttggtgtacaagtggtgccaaggc
attaataatctgcaagacgtttgggaaacgagtgaaggtgaatgcaatgtgatgctggaa
tctcgatttgagaagatgtatgagaagattgacctgacgttgctcaacaggctgttgcgt
cttattgttgatcacaacatcgctgactacatgacagccaagaacaacgtcgtgatcaac
tacaaggacatgaatcacactaactcctatgggattattcgcgggctgcagtttgcttcc
ttcattgtccagtattacgggcttgtgatggacctgctggtgctgggtctgcaccgtgct
agtgaaatggctgggcctccccagatgccaaatgacttcctcagcttccaggacattgcc
actgaggtggcccatcccattcgcctcttctgcagatacattgaccgtattcacatcttc
ttcaggtttacagcagatgaggcaagagacttgattcagcggtacctgacagagcatcca
gatcccaacaacgagaacattgtaggctacaacaacaagaagtgctggcctcgggatgct
cggatgcgcctcatgaaacatgatgtgaaccttggtcgtgctgtattctgggatatcaag
aaccgtttgcctcgatcagtcaccactgtgcagtgggagaatagctttgtatccgtttac
agcaaggataaccccaatttgctgtttaacatgtgtgggtttgagtgccgcatcttgccc
aagtgccgcaccagctatgaggagttcacccacaaggatggtgtctggaacctgcagaat
gaggtcaccaaggagcgcacagctcagtgcttcctgcgagtggatgatgagtctatgcag
agatttcacaacagagtgaggcagatcctcatggcatctggatccacaaccttcactaag
attgtcaataaatggaatacagctctgattggcttgatgacatatttccgggaagctgtt
gtaaatactcaggagttgcttgatttgctggtgaagtgtgagaataaaatccagactcga
atcaaaattggtctgaattccaaaatgcccagccgttttccacctgtggtgttttacact
cctaaagagctgggagggctgggcatgctctccatgggccatgttctcatcccacagtct
gatctgaggtggtccaagcagacagatgttggcatcactcacttccgctcaggaatgagt
catgaggaggaccagctcatcccaaatttgtatcgttacatccagccatgggaaagtgaa
ttcattgactctcagagagtatgggcagagtatgcccttaagcgacaagaggctatagcc
cagaacaggcgtctgacactggaggatctggaggactcatgggacaggggaattcctcgt
attaacacccttttccagaaggaccggcataccttagcttatgataaaggatggagagtc
agaactgacttcaagcagtatcaggtcctgaaacagaacccgttctggtggacgcatcag
cgccatgatgggaaactctggaacctaaacaactaccgcacagatatgatccaggcactt
ggtggagtggaggggatcctggagcacactctcttcaagggcacttacttccccacgtgg
gagggtctcttctgggagaaggctagtggctttgaggaatccatgaagtggaagaagctg
acaaatgcccagagatcgggtttgaaccaaattccaaacagaagattcaccctgtggtgg
tctcctaccattaacagagccaacgtatatgttgggtttcaggtgcagctggatttgaca
ggcatctttatgcatggcaagatccccacactgaagatttctctcattcagattttccga
gctcacttgtggcaaaagatccatgagagcattgtaatggatttgtgtcaggtgtttgat
caagagctggatgctctggagattgagacagtgcagaaagagacaatccatcccaggaag
tcatacaagatgaattcctcatgtgcagatatccttctctttgcttcctataagtggaat
gtgtcacgtccatcattgcttgcagattccaaagatgtgatggacagcaccaccactcag
aagtactggatagatatccagctgcgctggggagattacgattcccatgatatcgagcgc
tatgcaagagccaagttcctggactacactacagacaacatgagtatctatccatctccc
actggtgtgctcattgccattgatctggcctataacttgcacagtgcttatgggaactgg
ttccctgggagcaaacctctgatccagcaggctatggccaaaattatgaaagcaaatcct
gcgctgtatgtgttgagagaacgaatccgcaaggggttgcagctgtactcgtctgagccc
acagaaccgtacctttcctcccagaactatggagagctcttttccaaccagatcatctgg
tttgtggatgacaccaatgtgtacagagtgaccattcacaagacttttgaagggaatttg
accacaaaacccatcaatggagccattttcatcttcaatcccagaactggacagctcttc
ctgaagatcatccatacgtctgtatgggcaggacagaagcgtctaggacagctggccaag
tggaagactgctgaagaagtggctgccttgattcgatcgctccctgtggaggagcagcca
aagcagatcatagtgacacggaagggcatgttggacccacttgaggtgcacttgctggat
ttccccaatattgtgatcaaaggctcagagttgcagctgcccttccaggcctgtctgaaa
gtggaaaagtttggtgatcttatcctgaaggctactgaaccccagatggttctcttcaat
ctctatgatgactggctgaaaaccatctcttcctacacagcattctctcgtctgattctg
attctccgggcactacatgtgaataatgatcgagccaaagttattctgaaaccagataag
acaaccataacggagcctcaccacatctggccaaccctgacagatgaggagtggatcaag
gtggaggtgcagctgaaggatctcatccttgctgactacggcaagaagaacaatgtgaat
gttgcatccctgacacaatcagagatccgagacattatcctgggcatggagatctctgcc
ccctctcagcagagacagcagattgcagaaatagagaagcaaaccaaggagcagtcacaa
ctgacagccacacagacccgcactgttaacaaacacggggatgaaatcatcacctctaca
accagcaactacgaaacccagactttctcctccaagactgagtggcgagtcagagcaatt
tctgctgccaacctccacctgcgaacaaatcacatttatgtttcatcagacgatataaag
gaaacgggctatacatacattcttcccaagaacgtgttgaagaaattcatctgcatctca
gatctgcgggcccagattgcgggttacctgtatggagtgagccctcccgataacccccaa
gtgaaggagatccggtgcattgtaatggtgccccagtggggaacacaccagactgtgcat
ctcccggggcagctgccgcagcatgaatatctcaaggaaatggaacctctggggtggatt
cacacccaaccaaatgagtcccctcagctctcgccgcaggatgtcaccacccatgccaag
gtcatggccgacaacccctcctgggatggggagaagaccatcatcatcacctgcagtttt
acgccaggctcctgcacgctgacagcctacaaactgaccccgagcggctatgagtggggc
aggcagaacacggacaaagggaacaaccccaagggctacctgccatcccattacgagagg
gtgcagatgctgctgtcagatcgcttcctcggcttcttcatggtcccagcacaagggtcc
tggaactacaacttcatgggtgttcgccacgaccccaacatgaagtacgagctgcagctc
gccaaccccaaggagttttaccacgaggtccatcgcccgtctcactttctcaacttcgcc
ctgctgcaggagggcgaggtctactccgctgaccgggaggacctttacgcctag
DBGET
integrated database retrieval system
