Phaethon lepturus (White-tailed tropicbird): 104617839
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Entry
104617839 CDS
T08325
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
Pathway
plet03013
Nucleocytoplasmic transport
plet03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
plet00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104617839 (UPF1)
03015 mRNA surveillance pathway
104617839 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plet03019
]
104617839 (UPF1)
Enzymes [BR:
plet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104617839 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104617839 (UPF1)
Messenger RNA biogenesis [BR:
plet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104617839 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104617839 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104617839
NCBI-ProteinID:
XP_010281568
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
VNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVY
CNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGF
IPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQ
ITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADY
DKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKG
IGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETS
VSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPV
SFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT
CVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFD
FQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPY
EGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDP
RRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKP
RKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHV
TAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGIPGTSQSNLP
NSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
gttaatggacctgatggcattctgcagaatggagctgtggatgataacgtggctaaaacc
agccagcttctggcagagttgaattttgaagaagatgaagaagatacctattacacaaag
gatcttcctgtgcatgcgtgcagttactgtggtatccatgaccctgcttgtgtggtttac
tgtaacaccagcaaaaagtggttctgtaatgggcgtggaaatacatctggcagccacatt
gttaatcatcttgtgagagcaaagtgcaaagaggtgactcttcataaagatggacctcta
ggagagactgtcttggaatgttataactgtggatgtcgtaatgtgtttctccttggcttt
attccagctaaggcagactctgtggtggttttgctgtgcaggcagccatgtgccagtcag
agcagcttaaaggatattaattgggacagttcacagtggcagcctctcatccaagatcgc
tgtttcctttcatggctggtaaagattccatctgaacaggaacagttgagagcacgtcag
attacagctcaacagattaacaaactggaagaactttggaaggaaaatccatctgcaacc
cttgaggacttagaaaagccaggtgttgatgaagaaccacagcatgtcctgcttagatat
gaagatgcttatcaataccaaaatatatttggtcctctagtcaagcttgaggcagactat
gacaagaagctcaaggagtctcagacccaagataacatcacggtcagatgggacctgggc
ttgaacaagaaaagaattgcttatttcactttgccaaagactgattcagatatgcgtctt
atgcaaggagatgagatctgcttgaggtataaaggagacctggcccctttatggaaagga
attggtcatgttatcaaagttcctgataattatggtgatgagatagccattgaactgagg
agcagcgttggagcgcctgtggaagttactcataacttccaagtggattttgtatggaag
tctacttcgtttgacagaatgcagagtgctttaaaaacatttgctgtggatgagacttca
gtgtctgggtacatctatcacaaactgttaggtcatgaggtagaagatgtaattattaaa
tgccagttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtt
tatgctgtgaagactgtcctgcagcgtcctctgagccttattcagggtccccctggtact
ggaaaaacagtgacatcagccacaatcgtctatcatctggctagacagggcaatgggcct
gtgttagtctgtgctccgagtaatatagctgtagatcagttgactgagaagatccatcaa
actggactgaaagtggttcgtctgtgtgctaaaagtcgtgaggcaattgactctcctgta
tccttcttggcattgcataaccagatcagaaacatggatagcatgccagagcttcagaaa
ctgcagcagcttaaagatgaaactggagaactgtcatctgctgatgagaaacgttaccgt
gcactgaaacgaacagcagagcgtgaattacttatgaatgcagatgtgatctgttgcaca
tgtgtgggagctggtgatccaagacttgcaaaaatgcagttccgctccattctgattgat
gaaagcacacaggctactgagccagagtgcatggtgccagttgtcctgggagcaaaacag
cttattcttgtaggtgaccactgccagcttggtcctgttgtgatgtgtaaaaaagctgcg
aaggctggcctgtctcaatctctctttgagaggttggtggtgctggggattcgtccgatt
cgcctgcaagtgcagtatcgcatgcatcctgcactcagtgcttttccatccaatatcttc
tatgagggttcactccagaatggtgttactgcagcggaccgtgtgaaaaaaggttttgat
ttccagtggccacagccagataagccaatgtttttctatgttacacaaggacaggaagaa
attgccagctcaggcacctcttacttgaacaggacggaagctgccaatgtggagaagata
actacaaagctattgaaagctggtgccaaaccagatcagattggcattattactccttat
gaaggtcaacgatcctatctggtgcagtacatgcaattcagtggctccttgcatacaaag
ctctaccaggaagtggaaattgcaagtgtggatgccttccagggtcgagagaaggacttt
attatcctttcttgtgtgagggccaatgaacaccaagggatagggtttctgaatgacccc
aggcgtcttaatgtagctcttacaagagcaaggtatggagtaattattgttggcaaccca
aaagcgctgtctaaacaaccactttggaatcacctgctgaattactacaaggagcagaag
gttctggtggagggaccactgaataacctccgggaaagccttatgcagttcagcaagccc
cggaaacttgtcaataccatcaacccaggtgcccgtttcatgacaactgccatgtatgat
gcacgtgaggctattattccaggatctgtctatgaccggagcagtcaagggcgcccatcc
aacatgtacttccaaacccacgaccagatcgggatgattagtgctggccccagccatgtc
actgctatgaacattcctatcccgttcaaccttgtgatgccaccgatgccgccaccagga
tactttggccaggctaacggaccagctgcaggacgtggggcgccaaaggggaagactggt
cgcggtgggcgccagaaaaatcgttttgggattcctggaactagtcagtcaaatcttcca
aacagtcaagcgagccaagatgtggtgtcccagcctttctcccagggtccactgactcag
gggtatatctccatgagtcagccatcacagatgagtcagcctgggctctcccaaccagaa
ttatcacaggacagttaccttggtgatgagtttaaatctcagattgacgtggcgctgtca
caggactctacttaccagggtgaacgtgcatatcaacatggcggagtgacgggactgtca
cagtattag
DBGET
integrated database retrieval system
