Phaethon lepturus (White-tailed tropicbird): 104618584
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Entry
104618584 CDS
T08325
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
Pathway
plet04510
Focal adhesion
plet04512
ECM-receptor interaction
plet04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
plet00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104618584
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104618584
09142 Cell motility
04820 Cytoskeleton in muscle cells
104618584
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
plet04147
]
104618584
00536 Glycosaminoglycan binding proteins [BR:
plet00536
]
104618584
Exosome [BR:
plet04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104618584
Glycosaminoglycan binding proteins [BR:
plet00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104618584
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104618584
NCBI-ProteinID:
XP_010282519
LinkDB
All DBs
Position
Unknown
AA seq
1739 aa
AA seq
DB search
MKEVVELTYKEANQEEVKEQCYRVVEELAPQTLVPWMVPGPHRLLYAQVYCCILRAISEA
FIEGGKKSYSGPCGGRDCSAGCKCFPEKGARGRPGPIGLQGPIGAPGFTGPEGLPGAKGE
RGAVGPPGPAGQKGDKGPMGVPGFQGINGIPGHPGQSGPRGLPGLDGCNGTTGSPGVSGS
DGFPGLPGLPGHPGPKGLKGEPVFAQGSLKGMKGENGLPGLDGISGPKGFPGPIGSAGPI
GLPGLQGPMGPPGPPGPKGNMGLGFQGEKGEKGDVGLPGPPGPPPSTGILEFMGFPKGKQ
GEKGEPGPQGFPGDKGLPGIPGFGGVGEKGEKGVPGLPGGRGLLGLDGSKGIPGRKGHPG
VPGYPGLDGVEGMKGELGDIGPPGPPIVVDREGVVISGAPGDPGNLGIPGPPGDEGISGL
PGLPGAPGFPGLERDGMGPGGSPGVPGVKGDVGEPGRATIGLPGIPGRDGLPGLPGAPGL
PGSPRPSFPPDMILGGRTGAPGEPGQRGLPGALGLKGYKGEAGDCACDGGVTRAGLKGIS
GPPGPSGNPGVPGIKGIGGDPGTVGAPGLRGPPASAGQQGLPGLKGEKGDLSYATGRGAR
GDRGAIAPRGPSGIPGTPGRDGLPGLPGPPGPPGDGGLGFPGEKGLPGLPGSKGHHGETG
SPGVGYPGPSGVRGPPGDPGTDGFPGQAGLPGPPGITLPCIVPGAYGPPGTPGFPGLPGS
KGSKGFPGIXXXXXXXXXXXLHGSKGQPGSPGIIGLQGEPGFPGPRGEQGSQGLPGLDGT
DGLPGKMGASGLAGMKGAPGDVFGAESGALGERGRPGLPGDKGLTGDLGFPGPKGLDGRA
GLLGIKGEQGNPGYSGVPGLRGPPGPGGPFGIKGKSGPMGSVGLAGAPGCQGLPGVKGLS
GDVGPQGPAGMKGFPGLDGAPGSPGERGFLGPPGPFGQDGRPGFSGPKGEKGSSGLLGFP
GMPGLPGVPGVNGFKGTPGAAGGKGSPGVVGLQGQKGDRGDVGPPGLPVLGPPEQALQFK
GDKGDPGLAGLGGFPGPRGDKGIQGSRGQPGLPGPVGSASKERGPHGDPGFHGPPGQPGL
PGQKGTHGIIGFPGMNSXGSDGITGILGFPGPIGLPGPKGDQGESVGIXGAKGERGDPGF
PGERGREGLKGESGYPGNTGVNGLKGGPGDLGQEGPAGIPGNAGVRGIPGPPGPPGQPGS
VGFPGARGTAGPKGFHGFPGLTGLNGLPGTKGSPGTPGLSEAGLKGPAGLPGPKGEEGSP
GLGRGTLGFPGPKGSSGDMGPPGPVGLPGLPGTPGASIPSDIRGRPGDAGHPGTDGSSGL
PGPPGPRGPPGPASDQGDTGNPGFPGVLGLRGIKGDVGPTGPVGLPGASGFKGIRGEPGL
MGMPGKDGPPGDPGYPGLKGGSGRRGLPGQQGAPGITPQPEEITAPAGLPGLPGIDGVPG
FDGDPGFQGPAGKPGTKGLPGRSGLKGRDGLPGSPGIVGDPGPPGAPGPQGFEGVAGKPG
SLGLPGMPGRSVGVGYTLVKHSQSDQIPPCPIGMNKLWDGYSLLYVEGQEKSHNQDLGFA
GSCLPRFSTMPFIYCNINEVCYYASRNDKSYWLSTTAPIPMMPVDSVQIPQYISRCSVCE
APSQAVAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATP
FIECNGARGTCHYFANKYSFWLTTVEQSQQFVSAPPSETLKAGQLRTRVSRCQVCMKNL
NT seq
5220 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggtggtggagctgacctacaaggaggcaaaccaggaggaggtgaaggagcag
tgctaccgcgttgtggaagaactggccccacagactttagtgccatggatggttcctggg
cctcacagattgctctatgctcaggtctattgctgtatcctgagggccatttctgaggcc
ttcattgagggtggaaagaagtcttacagtgggccatgtgggggccgcgattgcagtgct
ggatgcaaatgttttccagagaagggtgcacggggtcgaccaggaccaattgggcttcaa
ggaccgataggggcacctggatttactggcccagaaggtttgccgggagcaaaaggtgag
agaggagcagtgggcccccctggaccagctggacagaaaggtgacaagggcccaatggga
gttcctggatttcaaggcatcaacgggatcccaggtcaccctgggcaatctggacctaga
ggtctgcctggcctcgatggctgcaatggtaccactgggagtcctggcgtttctggatca
gatgggtttcctggcctacctgggctgcctggtcatcctggtccaaagggccttaaagga
gaacctgtttttgctcaaggtagtcttaaaggaatgaagggagaaaatggtcttcctgga
ttggatggaatttctggcccaaaaggttttccaggtccaataggttctgcaggacctata
ggattgccaggcttgcagggtccaatgggtccccctgggccaccaggtccaaaaggtaac
atgggattaggctttcaaggagagaaaggagaaaaaggcgatgtagggctgcctggccct
ccaggtcccccaccatccactggaatactggaattcatgggatttccaaaagggaagcaa
ggagaaaagggtgagccaggccctcaaggattccctggagacaaaggattgcctggcata
ccgggctttggaggtgttggagaaaaaggagaaaaaggtgtgcctggcttaccgggtggc
aggggtcttttgggactggatggatctaaagggattccagggagaaagggtcatccaggt
gttccaggctatcccggactggatggagttgaaggcatgaagggtgaattaggtgacatc
ggtcccccaggccctcctattgttgttgacagggaaggtgtagtcatttcaggtgcccca
ggtgaccctggaaacctgggaatacctggtcctccaggagatgaagggatcagtggttta
ccaggccttccaggagctccaggatttccaggcctggagagagatggaatgggccctgga
gggtctccaggtgttccaggtgtgaagggtgacgtgggagaaccaggaagagcaacaatt
ggattaccaggcattcccggcagggatggtttaccaggtctaccaggagcaccaggattg
cctggttcaccacgcccttcgttccccccagacatgatcctgggtggaaggactggggcc
ccaggagagcctggacaaagagggctgccgggagctttgggcctgaaggggtacaaagga
gaggcaggtgattgtgcttgtgatggaggagttacaagagctggtctaaaaggcatctca
ggtccaccaggtccatcgggaaaccctggtgtgcctgggattaagggaattggtggagac
ccaggcactgtgggcgcaccaggactgcgaggccctccggcttcagctggtcagcaaggt
cttccaggccttaagggagaaaaaggagatttgtcctatgcaacaggcagaggtgctcgt
ggggaccgtggtgcaatagcacccagaggaccttcaggcatcccgggaactcctggcagg
gatggacttccaggcttgccaggcccaccaggccctccaggtgatggtgggctaggtttc
ccaggtgaaaaaggactaccaggattacctggctccaagggccatcatggagaaactggt
tctcctggtgttggatatccaggtcctagtggagttcgtgggccgccaggtgacccagga
acggatggctttccaggacaagcaggacttccaggccctccaggtatcaccctgccctgc
atagttcctggagcatatgggcccccagggacccccggctttccaggactgccaggttcc
aaaggcagcaaaggttttcctggcattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnga
ttacatgggtcaaaaggacagccagggtctccaggaataataggcttgcaaggggaacct
ggctttcctgggcctcgaggagagcaagggtcacaaggacttccaggactggatggaaca
gatggtttgcctgggaaaatgggtgcttcaggcttagctggaatgaaaggggctcctgga
gatgtatttggtgctgagagtggagccctgggagagcgtggccgacctggactcccaggt
gataaagggcttacaggtgatcttggatttccaggaccaaaagggttagatggaagagca
ggcctcctaggcattaaaggcgaacagggtaatccaggatattcgggtgtccctggattg
cgaggacctcctggtcctggaggtccttttggcattaagggaaaatcaggacccatgggg
tcagttggccttgcaggagcaccaggctgtcaaggacttcctggagtcaaaggcttgagt
ggagatgtaggtccacaaggccctgctggtatgaaaggcttcccaggtcttgatggtgct
ccaggatctcctggggaaagaggattcttagggccacctgggccttttggtcaagatgga
cgtccaggtttctctgggccaaaaggcgagaaagggtcttctggcctgcttggtttccct
ggcatgccaggcctgcctggtgtccctggggtgaatgggtttaaaggaactcctggcgca
gctggaggaaaaggaagccctggagttgtgggactccaaggtcaaaaaggtgacagaggt
gatgtaggtccacctggtcttcctgttcttgggcctccagaacaggcactgcaattcaaa
ggagacaaaggagatcctggattagctggacttggaggattccctggacctagaggtgat
aaaggaatccaaggaagccgtggacagcctggtctccctggtccagttgggtcagcaagc
aaagagagaggtcctcatggtgacccaggcttccatggtccacctggacagcctgggctg
ccaggacagaagggtacgcatggtatcataggatttccaggaatgaattcttaaggttca
gatggtatcacaggaatacttggattcccaggacctattggcctccctggtccaaagggt
gaccagggagagtctgttggcatanntggagcaaaaggagagcgaggggacccagggttc
ccaggagagagaggaagagaaggactcaagggtgaatcaggctacccaggaaacactggg
gtgaatggactcaaaggaggcccgggagatcttggccaagaaggaccagcaggaatccct
ggaaatgctggggtgagaggaatccctgggccaccagggcctccagggcagccaggatct
gtcggattccctggagctcgtggaacagcaggacctaaagggtttcatggatttccaggt
ttaactggtctgaatggcttgccaggcacaaaagggtctcctggaacaccaggtctgagc
gaagctggactgaaaggccctgcaggtctcccaggtccgaagggtgaagaaggttctcca
ggcttgggtagaggaactctaggattccctggaccaaaaggctcatcaggagacatgggt
ccacctggtcctgtgggactgcctggcttgccaggaacacctggagcttctattccttct
gatatacgtgggagacctggggatgctggccatccaggaacggatgggagctcaggtctt
ccaggtcctccaggaccacgaggcccccctggcccagcttctgaccaaggtgacacaggc
aatccaggtttccctggtgttcttggcttgcgaggcattaagggtgacgtgggacccact
ggtcccgttggactccctggagcatctggattcaaaggtataagaggggagcctggcctt
atggggatgccaggtaaagacgggcctccgggcgatcctggttaccctgggctgaaaggt
ggatcgggccgtcgaggtctccctggccaacaaggggctccaggtataaccccacagcca
gaagaaatcacagcccctgcaggcttacctggtctgccaggaattgatggtgtccctggc
tttgatggagatcctggattccagggcccagctggaaaaccaggtacaaaaggtctgcca
ggaagatctggtttgaaaggacgggatggtttgcctggatcacctggcatagttggggat
ccaggacctccaggtgccccaggaccacaaggatttgaaggtgttgctggaaagccgggc
tcgcttggtttgccgggaatgcctggtcggagcgtgggtgttggatacactttagtgaag
cacagtcagtcagaccaaatcccaccttgtcccataggaatgaataagctctgggacggc
tacagcttattgtacgtggaggggcaggaaaagtcacacaaccaggatcttggttttgct
ggctcctgtttgcctcgcttcagcaccatgccttttatttactgcaacatcaatgaagtg
tgctactatgccagccgaaatgacaagtcctactggctctccaccactgctcctatcccc
atgatgccagtggacagtgttcagatcccacagtacatcagtcgttgctcagtgtgtgaa
gctccttcccaggctgtggctgtgcacagccaggacatcaccatcccacagtgtcccctt
ggttggcgcagcctatggataggttattccttccttatgcatactgcagctggtgcagaa
ggtggaggtcagtcccttgtctcacctggttcttgcctggaggatttccgtgctactcca
ttcatcgaatgcaacggtgctaggggaacgtgccattactttgcaaacaaatacagcttc
tggctgacgactgttgaacagtcacagcagtttgtcagtgctcctccctccgaaactctg
aaagccggacagcttcgaacaagggtcagccgttgccaagtgtgcatgaagaacttgtag
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