Phaethon lepturus (White-tailed tropicbird): 104620004
Help
Entry
104620004 CDS
T08325
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
Pathway
plet03082
ATP-dependent chromatin remodeling
plet03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
plet00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104620004 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
104620004 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
plet01009
]
104620004 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plet03021
]
104620004 (SMARCB1)
03036 Chromosome and associated proteins [BR:
plet03036
]
104620004 (SMARCB1)
Protein phosphatases and associated proteins [BR:
plet01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104620004 (SMARCB1)
Transcription machinery [BR:
plet03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
104620004 (SMARCB1)
SWI/SNF complex
104620004 (SMARCB1)
Chromosome and associated proteins [BR:
plet03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
104620004 (SMARCB1)
PBAF complex
104620004 (SMARCB1)
SWI/SNF complex
104620004 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
104620004
NCBI-ProteinID:
XP_010284372
LinkDB
All DBs
Position
Unknown
AA seq
349 aa
AA seq
DB search
MFRGSLYKRYPSLWRRLATVEERKKIVASSHENQRSHSPRRYHGYTTLATSVTLLKASEV
EEILDGNDEKYKAVSISTEPPTYLREQKAKRNNQWVPTLPNSSHHLDAVPCSTTINRNRM
GRDKKRTFPLCFDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPE
MFSEILCDDLDLNPLTFVPAIASAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLV
DQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTV
EIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgtttcggggttccctgtacaagagatatccctcgctctggaggcgactagccacagtg
gaagaaaggaagaagatagtggcctcttcacatgaaaatcagcggtctcacagtcccaga
agatatcatggctatacaacattagccactagcgtgacgctgttaaaggcctctgaagtg
gaagagatcttggatggaaatgatgagaagtataaggcagtgtctatcagcacagaacct
cctacctacctcagagaacagaaggcaaagaggaacaaccagtgggtgccgaccctgccc
aacagctctcatcacctggatgcagtgccatgctcaacaacgattaaccgaaatcgcatg
ggcagagataagaagaggacgttccctctgtgctttgatgaccatgacccagcagtgatc
catgagaatgcatcccagccggaggttcttgttccaatcaggcttgatatggaaattgat
gggcagaaactcagagatgcgtttacgtggaacatgaatgaaaagctaatgaccccagaa
atgttctctgagattctttgtgatgatctggatttgaatcctctgacttttgtccctgct
attgcctctgccatccgacaacagatcgagtcgtacccaactgacagtatcctagaagat
cagtcagatcaacgagttattattaagctaaacatccatgtagggaacatctcccttgta
gaccagtttgaatgggacatgtcagagaaggagaattcaccagagaagtttgccttgaag
ctgtgctcagagcttggcctgggtggggagtttgtcactactattgcctacagcatccgg
ggacagctgagttggcatcagaagacatacgccttcagcgagaaccctttgccgactgtg
gaaattgctattcgcaacacgggggatgctgaccagtggtgccctcttctggaaaccctc
acagatgccgagatggagaagaagatcagagaccaggacagaaatacaaggcgcatgagg
cgtttggccaatactgctccagcttggtaa
DBGET
integrated database retrieval system
