Phaethon lepturus (White-tailed tropicbird): 104621096
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Entry
104621096 CDS
T08325
Symbol
PAN2
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN2
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
Pathway
plet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104621096 (PAN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plet03019
]
104621096 (PAN2)
Enzymes [BR:
plet01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104621096 (PAN2)
Messenger RNA biogenesis [BR:
plet03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104621096 (PAN2)
mRNA degradation factors
3'-5' decay
Pan complex
104621096 (PAN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_like
WD40_CDC20-Fz
Beta-prop_THOC3
Motif
Other DBs
NCBI-GeneID:
104621096
NCBI-ProteinID:
XP_010285792
LinkDB
All DBs
Position
Unknown
AA seq
1164 aa
AA seq
DB search
LDPSLAEYAPPLHPALDSVLDPHLNPSLLQNVELDPEGVPLEGIAVPESVHLMEGMYSEL
HTAVSEVGVPVSVSHFDLHEEMLWVGNHGGHATSFFGPTLERYSSFQVNSSDDIRQIQSL
ENGVLFLTKTNLKYMSRGGLIIFDYLMDESEDMHSLLLTDSSTLLVGGLQNHVIEIDLNT
VQETQKYTVEVPGITIMRQSNRFFFCGHTSGKVSLRDLRTFVVEHEFDAYSGSLSDFDVH
GNLLVTCGFSSRMNGLACDRFLKVYDLRMMRAITPLQVHIDPFFLRFIPTYTSRLAIISQ
TGQCQFCEPTGLANPADIFHVNTVGPLIMTFDVSASKQALAFGDSEGCVHLWADSPDVTF
NAYSRETDFALPCIVDTLPHLDWNQDLVPLSLIPVPLTSDTLLSDWPAANSAPAPRRAPP
VDPEILRTMKKVGFIGYAPNPRTKLRNQIPYRLKETDNEFDSFSQVPESPIGREEEPHLY
MVAKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEPVRCLV
QNHLCQKEFCLGCELGLLFHMLDLSRGDPCQGSNFLRAFRTIPEASALGLILADSDEATG
KVNLGRLIQSWNRFILTQLHQETQEQEGPQAYRGVGSSSFGSSGDSVIGQLFSCEMENCS
MCRCGKETVRVSSTLLFTLSYPESTEKPVKDYEFAQILKRSICLEQNTQAWCENCEKYQP
TVQTRNIRCLPDVLVINCEVNSSKEADFWKTQAEYAFQRAMMKRGGFEITKGKEISLGEW
KELGNPDTGHSYPSVEELKNIWIPHAIKMRLTKSKELDVCNWSESDELSPTEDPESVYVY
DLMATVVHILDSRTGGSLVGHIKVGETYHQRKEGVTHQQWYLFNDFLIEPVDKCEAVQFD
MSWKVPAILYYVRRNLNAKYNLVIKNPIEASVLLAEASLARKQRKCHATFIPLMLSEMPQ
AGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNEGVPFIDDYIS
TQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDVGVKFVGHGLQKDFRV
INLMVPKDQVIDTVYLFHIPRKRMISLRFLAWYFLDLKIQGETHDSIEDARTALQLYRKY
LELSPQGAEPEDFRKVLKGLYEKG
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
ctcgacccctcccttgccgagtatgctccccccctccaccctgcgctggactctgtcctg
gacccccatctcaaccccagcttgctgcagaacgtggagctggatcccgagggggtgccg
ttagagggtatcgcggtgccagaatcagtgcacctcatggagggcatgtacagcgagctg
cacaccgccgtctctgaagtgggggtgcctgtctccgtctcccattttgacctgcacgaa
gagatgctgtgggttgggaaccacgggggccacgccacctccttcttcggcccgacgctg
gagagatactcctccttccaagtaaatagcagtgatgacatccgccagatccagagcctg
gagaacggtgtccttttcctgaccaaaaccaacctgaagtacatgtcacgagggggcctc
ataatttttgactacctcatggacgagtccgaggacatgcatagtctcctgctgacagac
agcagcacgctgctcgttggtgggctgcagaaccatgtcattgagatagacctcaacacc
gtccaggagacacagaagtacaccgtggaggtgcccggcatcaccatcatgaggcaatca
aaccgcttctttttctgtgggcacacctcggggaaggtctccctgcgtgatctgcgcacg
tttgtggtggagcacgaattcgatgcttactcaggcagcttgtctgattttgatgtccat
gggaacctgctggtgacctgcggcttctccagccgaatgaacggcctcgcctgcgaccgc
ttcctgaaggtgtatgacctgcggatgatgcgggccatcaccccactgcaggtccacatc
gaccccttcttcctccgcttcatccccacctacacctcccgcctggccatcatctcccag
acaggtcagtgccagttctgcgagcccactggcctcgccaaccctgctgacatcttccac
gtgaacaccgttgggcctctgatcatgaccttcgacgtctcagccagcaagcaggcccta
gccttcggcgactcggaggggtgcgtccatctctgggctgactccccggatgtcaccttc
aacgcctactcccgggagactgactttgccttgccctgcatcgtggacacgctaccccac
ttggactggaaccaggaccttgtgccgctctcgctcatccctgtgccactgaccagtgac
accctgctctccgactggcctgctgccaactctgccccggcaccccggcgagcccctcca
gtagatcccgagattttgcgcaccatgaagaaagtggggttcatcggctatgccccaaac
ccaaggaccaagctccgcaaccagattccctatcggttaaaagagacggacaatgagttt
gacagcttcagccaagtccctgagtccccgattgggcgggaagaggagccacacctctac
atggtggccaagaagtacaggaaggtcaccatcaaatactccaagctggggctggaagac
ttcgacttcaagcattacaacaagacgctgtttgcaggcctggagccccatatccccaac
gcctactgcaactgcatgatccaagtgctgtatttcttggagccggtccgctgcctggtc
cagaaccacctgtgccagaaggagttctgcttgggctgtgagctgggcttgctcttccac
atgctggacctgtcccgaggagacccctgccaggggagcaactttttgcgggctttccgc
acaatcccagaggcttcggcgctggggctgatcctggctgactcggacgaagccacaggg
aaggtgaacctggggcggctgattcagagctggaaccgtttcatccttactcagctgcac
caggaaacccaggagcaggagggaccgcaggcatatcggggggttggcagcagcagcttt
gggtcctcgggggactctgttatcgggcagctgttcagctgtgagatggagaactgcagc
atgtgtcgctgtggcaaggaaacggtccgtgtgtcctccacgctgctcttcaccctctcc
taccccgagagcaccgaaaagccggtcaaagattatgagtttgcccaaattttaaagaga
agcatctgcttggagcagaacacacaagcctggtgcgagaactgtgagaagtaccagccc
acggtccagacccggaacatccgctgcctgccggacgtcctggtcattaactgtgaggtg
aacagctccaaggaggcagatttctggaagacacaggctgagtatgcctttcagagagcc
atgatgaagagaggaggttttgagatcaccaaaggcaaagaaatctctcttggagagtgg
aaggagctggggaaccccgacacggggcattcatatccttctgtggaggaactgaagaac
atttggatcccccatgccatcaagatgaggctgaccaagagcaaggagctggatgtctgc
aactggagtgagagtgatgagctgagcccaaccgaggaccctgagtcagtctatgtctac
gatctaatggccaccgtcgtccacatcctggattcccgcaccgggggcagcctggtgggg
cacatcaaagtgggagagacctaccaccaaaggaaggagggagtcacacaccagcagtgg
tacctcttcaacgacttcctcatcgagcccgtggacaagtgtgaggcggtgcagtttgac
atgagctggaaggtgccagctatcctctactacgtccggaggaacctcaacgccaagtac
aacctcgtcatcaagaaccccatcgaagccagcgtgctgctcgcagaggcctccctggct
cgcaagcagcgcaagtgccatgccaccttcatccccctcatgttgagcgagatgccacag
gcaggcgacctcgtgggactggatgccgagtttgtcacgctgaacgaggaggaggccgag
ctgcgcagcgacgggaccaaatccaccatcaagcccagccagatgtcggtggccaggatc
acatgtgtgcgtgggcagggacctaatgagggtgtccccttcattgatgactacatctcc
acccaagagcaggtggtggattacctgacccagtactcggggatcaagccgggagacctg
gatgccaagatctcctctaagcacctcaccactcttaaatccacctacctaaagctacgc
ttcctcatcgacgtgggcgtcaagtttgtgggccatgggctgcagaaggacttccgtgtc
atcaacctgatggtgcccaaggaccaggtaattgatacagtctacctcttccacatcccg
aggaagaggatgatttccctgcgtttcctcgcctggtacttcctggacctgaagatccag
ggtgagacccacgacagcatcgaggacgcacgcacggcgctgcagctctaccgcaagtac
ctggagctgagcccccagggcgccgagcccgaggacttccgcaaggtcctcaagggcctc
tatgagaagggg
DBGET
integrated database retrieval system
