Phaethon lepturus (White-tailed tropicbird): 104621393
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Entry
104621393 CDS
T08325
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin alpha-C1-like
KO
K16493
protocadherin alpha
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
Pathway
plet04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
plet00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
104621393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
plet03036
]
104621393
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
plet04515
]
104621393
Chromosome and associated proteins [BR:
plet03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
104621393
Cell adhesion molecules [BR:
plet04515
]
Cadherins
Protocadherins
104621393
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_FAT4_N
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
104621393
NCBI-ProteinID:
XP_010286166
LinkDB
All DBs
Position
Unknown
AA seq
733 aa
AA seq
DB search
SPPLRPWCPLASRWELGVLLEILDYVPAEPVYGELSRGGRMRVYLTVFCLICCTANGQVV
YSITEETERGASVGNIAKDLGIDAATLSARKFRMITGSSKQYFNINASTGALSVNEPIDR
EQLCELKSACLLNYELVLENPLELYRMEFKVLDINDNSPSFPLSEYHINVPEFLSPGARF
TLPIAQDLDEGTNSVQNYTLSPDEHFHLEMQTRGDGSKYPELVLKNALDREEQAAHRLVL
TAKDGGDPPKSGHVPVIVAVLDTNDNAPEFEHSVYRASILENSPSGTLVVQVHATDLDEG
PNGEIRYSFSNTTSADLQRMFLIHPHTGEVTVNGVLAVQRPLLEMLIEASDNGAFGMSST
AKLLVEITDVNNHGPEITITSLSSPIPEDAVPGTVIALLSIMDKDPGENGKVTCQIPDNL
PFQLKPSLENYYSLLTSGLLDRELISGYNITITATDLGSPPITAQKTLWVQISDVNDNPP
VFSADSFDVFVEENNPLGTLLYQVSASDPDMGENGRVSYMLRNSTVAGSALTSFLSVSLA
NGSIYATRAFDFEQLRSFYFQVEAKDNGSPTLSAAVTMNVYILDQNDNAPTILYPTSQNG
SVAVEIVPRLADEDYLVTKVVADDEDSAQNAWLSYHLVHSSDSTLFRLAPHSGELRTTRS
MRSTDFLKHKVVVVVRDHGDPPLSSTVTVGILLADTLPQALPDFDDSGEPPPLLNATNIY
LIVSLACVSCIFA
NT seq
2201 nt
NT seq
+upstream
nt +downstream
nt
cctcgccgccgctgcgcccttggtgccccttagcttcgcgctgggaacttggggttttgc
ttgaaattctggattatgttcctgcggagccggtctacggggagctgagcaggggaggaa
gaatgcgggtctatctaacggtcttctgccttatttgctgcaccgcgaacgggcaagtag
tgtattccatcaccgaggaaacggagcgtggagcgtctgttggaaacatagcgaaggatt
taggaatagatgcagctacactttcagctcggaaatttcgcatgatcaccggttcaagta
agcaatattttaatataaatgcaagcacgggggctttgtctgttaacgagcccatagaca
gagagcagctttgtgaattaaagtctgcctgtcttctgaattatgaactcgtgttagaaa
accctctagagctttataggatggaatttaaagtcttggacataaatgacaactccccca
gctttcccttaagtgaatatcatataaacgtgcctgagttcctgtcacccggggcacggt
ttacactccccatcgcccaagatcttgatgaaggtaccaacagtgtccagaattatactc
tgagccctgatgaacatttccatttggaaatgcagacacgcggagatgggagtaaatatc
ctgaattggtgctgaaaaatgccttagatagggaggagcaagctgctcacagacttgtcc
ttacagccaaagatggtggggatcctccaaagtccggtcatgtcccagtcattgtggctg
tgctggataccaatgacaatgcaccagaatttgagcactcggtctacagggcgagtatct
tggaaaactcccccagtggtactttggtagtgcaagtgcatgccacggacttggatgaag
gtccaaatggagagatcaggtattcatttagcaatactacttctgctgatctacagcgaa
tgtttttaattcacccacacactggggaggtgacagtcaatggcgttttagctgttcaga
gacctctccttgagatgcttattgaggcaagtgataatggggcatttggcatgtccagca
cagctaagttgctggtggaaatcactgatgtgaacaatcatggcccagagataacaatta
catccctttccagtcccattcctgaggatgctgttcctggcacagtcatagctctgctga
gtattatggataaggaccctggggagaatgggaaagtaacctgccagatacctgataacc
ttcccttccagttaaagccttctcttgaaaactactacagcctgctcaccagtgggcttc
tggaccgagagctgatcagtgggtacaacatcaccattactgccacagacttgggctctc
cacccatcactgctcagaagaccctttgggtgcagatttctgatgtgaacgataaccccc
ctgtcttcagtgctgactcgtttgatgtgtttgtggaggagaacaatccacttggcactt
tactctaccaagtctcagcatctgaccctgatatgggggagaacggacgggtctcttaca
tgctcaggaattccacagttgcaggcagtgccctgaccagctttttgtctgtgagcttgg
ccaacgggagcatctatgcaacacgtgcctttgactttgagcagcttaggagtttctatt
tccaagtggaagccaaggacaatgggtcaccaacgttgagtgctgccgtaactatgaatg
tttacatcttggaccagaatgacaatgccccaaccatcctgtaccccacgagccagaatg
gctctgtagctgtggaaattgtgccccgcctggccgatgaggactacctggtgaccaaag
tggtggcagatgatgaagacagtgcacagaatgcctggctctcctatcaccttgtccact
cctctgactccaccctgttccgcttggcaccgcactctggtgagctgcgcaccacgcgct
ccatgcgctctactgacttcctcaagcacaaggtggttgtggtggtgcgggaccacgggg
atccaccactctcctctactgtgacagtgggcatcctgctggctgacaccctgccccagg
cactgccggactttgatgacagtggggagccgccaccactgctcaatgctacaaacatct
acttgatcgtttcccttgcctgtgtctcctgcatctttgcg
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