Phaethon lepturus (White-tailed tropicbird): 104622982
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Entry
104622982 CDS
T08325
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
Pathway
plet03030
DNA replication
plet03410
Base excision repair
plet03420
Nucleotide excision repair
plet03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104622982 (RFC1)
03410 Base excision repair
104622982 (RFC1)
03420 Nucleotide excision repair
104622982 (RFC1)
03430 Mismatch repair
104622982 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plet03032
]
104622982 (RFC1)
03400 DNA repair and recombination proteins [BR:
plet03400
]
104622982 (RFC1)
DNA replication proteins [BR:
plet03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
104622982 (RFC1)
DNA repair and recombination proteins [BR:
plet03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
104622982 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_14
Rad17
AAA_5
BRCT_2
AAA_22
AAA_30
RuvB_N
AAA_16
AAA_7
AAA_18
RNA_helicase
AAA_33
nSTAND3
AAA_17
NTPase_1
AAA_19
AAA_28
Motif
Other DBs
NCBI-GeneID:
104622982
NCBI-ProteinID:
XP_010288222
LinkDB
All DBs
Position
Unknown
AA seq
1163 aa
AA seq
DB search
MAATTGGSDANQDIRKFFGVVLPGKRQECETVKKSEKTKNGEGPSSGKKRGKEAKVNNSP
SEDDSKQKRTNKKRRIIYDSDSEEEVQSVKKSKKSSEKKAATSKLDKVLKQDPVVYISET
DEEDDFVNKRTSLKPKENGTSTVGCLGTTVVKKQDAKPRAKSKPLSPVKQTPTSALDYFG
ASSVQRSEKKLVASKRKEPSQSRDSTVDDEAIARQLQLEEDSELERQLHEDEEFAKTLAM
LDETPQEKKARKDLRGEQTVLSIKSSPNVAERYKQSERAKATNSTGEAKNYTAKQKTKSE
HSKGSRLSPQSSDCKIARELTNKTLPLKPSSKLVSLKQKEEIAEKQRGAQSLISKEKAAS
GKEGKTTPKKEKISPKKTESVSPEDSEKKRTNYQAYRSFLNREGPKALGSKEIPQGAENC
LEGLTFVITGVLECIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASTLG
TKVIDEDGLFDLIRTMPGKKSKYELAAEMETKQAESRSKKTPQKTEKRNFSPFKRETDNK
KNKSTPEKGDTVKSVKKETTAVRKLTDFKRQTVEKKDAPKPKGNLVSEINEDGTERLLWV
DKYKPVSLKAIIGQQGEQSCANKLLRWLRNWHKNTSEDGQAKTNKTGGKDDGSAFKAALL
SGPPGVGKTTTASLVCKELGYSYVELNASDTRSKNSLKEIVAESLNNTSIKDFCSGTSSS
VSGKHVLIMDEVDGMAGNEDRGGIQELIGLIRHTKIPIICMCNDRNHPKIRSLVHYCFDL
RFQRPRLEQIKGAMMSIAFKEGLKIPPPAMQEIILAANQDIRQVLHNLNMWCAKDKSLTY
DEAKTDASRAKKDIKLGPFDVVRKVFATGEEASRMSLIDKSDLFFHDYSLAPLFVQENYV
HVKPAAAGGNLKKHLVLLSRAADSICDGDIVDKQIRSKQNWNLLPTQAIYASVLPGELMR
GYMSQFPVFPSWLGKFSSTGKHDRIIQELSMHMSLRXXMCKRTVINMEYLSYLRDALVRP
LQDFGTDGVQEAVTFMDSYCLMKEDIENIMEISTWGGKPSPFSKLDPKVKAAFTRAYNKE
VHLTPYSLNYVKTSKRQSGSAVALDLNEDLYVEEIQSDEDEQDTVESDAMIKQKKAKSSK
LPKREKNEDTTKKEGKRKEKTRH
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggctgctaccactggaggtagtgatgccaaccaggatatccggaaattctttggcgtt
gtacttcctggaaagcgacaagaatgtgagactgtgaaaaaaagtgaaaaaactaaaaat
ggtgaagggccctcaagtgggaagaaaaggggaaaggaggctaaggtgaataattcaccc
agtgaagatgattccaaacaaaagcggacaaacaagaaaagaagaataatctacgattca
gattcagaagaggaggtgcagtcagtgaaaaaatccaagaagtcatctgagaaaaaagca
gctacttcaaaacttgataaagttctaaagcaggatcctgttgtttatatttcagagaca
gatgaagaagatgactttgtcaataaaagaacttccctgaaaccaaaggagaatgggacg
tcgactgtcggttgtctgggaacaactgtagtgaaaaagcaagatgcaaaaccacgagcg
aaaagcaaaccattatctccagtgaagcagactcccacctcagcacttgattactttggg
gcaagtagtgtccaacgatcagaaaagaaactggtagcaagcaaaaggaaagaaccttca
caaagcagagacagcacagtagatgatgaggccattgctaggcaactgcagcttgaagaa
gattcagagctggagagacagctgcatgaagatgaagaatttgctaaaactttggccatg
ttggatgaaacaccacaggagaaaaaggctcggaaagatttgagaggagagcaaacggta
ttgagcatcaagagcagtcctaatgtggcagaaagatataagcagtcagaaagagcgaaa
gcaacaaactcgacaggtgaagcaaagaattacactgcgaagcagaagactaaatctgaa
cattcaaaagggtctcgtttatccccacaatcatctgattgtaaaatagcaagagagttg
acgaataagaccttgcctttgaaacctagctctaagcttgtgtctctgaaacaaaaagaa
gagattgctgaaaagcaaagaggtgctcaaagtttaatatcaaaagaaaaagctgcttca
gggaaagaaggcaagacaacaccaaagaaggagaaaatttctcccaagaagactgagtct
gtaagtcctgaggactctgaaaagaagcgaaccaattatcaagcctaccgaagcttcctt
aatcgtgaaggtccaaaagcactgggttccaaagagatacctcagggagctgaaaactgc
ttggaaggcctgacgttcgtaattacaggcgttctggagtgtattgaaagggatgaggcc
aagtctctgattgaacgttatggaggaaaagtaactggcaatgtcagcaagaagacaaac
tatctggttatggggcgagactgtggccaatctaaatgtgaaaaggcatcgactttaggg
acgaaagttattgatgaggatggcctgtttgatcttattcgaaccatgccgggcaaaaag
tccaagtatgagctggcagctgaaatggagacaaaacaagcagagtcaagatctaaaaag
acaccccagaaaactgaaaaaaggaattttagccccttcaaaagggaaactgataataaa
aaaaataagtccactcctgaaaaaggagatactgtcaaatctgttaagaaagaaaccact
gctgttcgaaagcttacggactttaaacgacaaactgtggagaagaaagacgctccaaaa
cccaagggaaacttggtttctgagattaatgaagatggaacagagagattgctatgggta
gataagtacaagcctgtatctcttaaggcaataattggacagcagggcgagcaaagctgt
gccaataaactgctccgatggctccgaaactggcacaagaatacctcagaagatggacaa
gcaaagaccaataaaactggaggcaaagatgatggttctgcttttaaagcagcattactt
tctggtccacctggagttggtaaaactactacagcttctttggtttgtaaggaactgggg
tatagctatgtggagctgaatgccagtgacactcgcagcaagaacagtctaaaggaaata
gttgccgaatcacttaacaacaccagcatcaaagacttttgttctggcacatcctcatca
gttagcgggaaacatgtattgatcatggatgaagtggatggtatggcaggcaatgaagac
agaggagggattcaggagctgattggtttgattagacacacaaagatacccatcatctgt
atgtgtaatgatcgcaaccatcctaaaattcgttccttggtccactactgttttgatctt
cgttttcagagacctcgtttagaacagattaagggtgctatgatgtctattgcatttaaa
gaaggtttaaaaattccaccacctgctatgcaagagataatcctggcagcaaatcaggac
atcaggcaggttttacataatcttaatatgtggtgtgcaaaagataagtcattgacttat
gatgaggccaaaacagatgccagcagagccaaaaaggatatcaaactgggcccttttgat
gttgtccggaaggtttttgctactggagaggaggcttctcgtatgtctcttatagacaaa
tccgatcttttcttccatgattattccctagcgcctctttttgtccaagagaactatgtg
cacgtgaaaccagccgctgctggaggaaatctgaaaaagcacttggtgctcttgagtaga
gcagctgatagcatatgtgatggtgatatagtagacaaacagattcgtagcaagcaaaac
tggaatcttcttccgacacaggctatttatgcaagtgttctcccgggagagctgatgaga
ggctacatgtcccagtttcctgtctttcccagctggctggggaaattttcatccacaggc
aaacacgatcgtatcattcaagaactgtcaatgcacatgagtctcaggnnnnnnatgtgc
aagaggacagtaataaatatggagtatctgtcatatttgcgggatgcacttgtccggccc
ttgcaagactttggaacagatggtgtacaagaagctgtaacattcatggactcttactgc
ttgatgaaagaagatattgaaaatatcatggaaataagcacatggggaggcaaacccagt
cctttttcaaagctggatcctaaggtcaaagcagcttttacacgtgcctacaacaaagag
gtacatctgactccatattcacttaattatgtgaagacatctaaaaggcagtcgggatct
gctgtggccttagatctgaatgaagacttgtatgtggaggagatccagtctgatgaggat
gagcaagatactgttgaaagtgatgcaatgattaagcaaaaaaaggcaaagtcttccaag
ctgccaaaaagagagaaaaatgaagacacaacaaaaaaagaagggaaaagaaaagagaaa
acaagacattaa
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integrated database retrieval system
