Phaethon lepturus (White-tailed tropicbird): 104623134
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Entry
104623134 CDS
T08325
Symbol
HFM1
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent DNA helicase HFM1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
Brite
KEGG Orthology (KO) [BR:
plet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
plet03036
]
104623134 (HFM1)
Enzymes [BR:
plet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
104623134 (HFM1)
Chromosome and associated proteins [BR:
plet03036
]
Eukaryotic type
Meiosis-specific proteins
Others
104623134 (HFM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
ResIII
Helicase_C
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
104623134
NCBI-ProteinID:
XP_010288461
LinkDB
All DBs
Position
Unknown
AA seq
1389 aa
AA seq
DB search
MFNSADMIFSLDNLFYERPDTRQRHLENEEPKICCIAPAPAIAEIPAAEELQRELEKNTA
NTHMGKKHQKFIQQCKSNMEEGNDKSPAPVHFGIASEKEVLQLSVGEREKISFRHISLKM
VSLFLSXDQDKSETGAEVSQQPGANFSQNKILSNFPENSDDESVHSTLRKSLFKMSGYMY
KNTEFNYSSMDVKESDPYLNTNEKMKEVRKEGLWRNSRHTPITKDSDFTLQGVNDGDITS
KNGIEMKSFANASEILDMTGTTGRKLEILRAVTEIPTQFRSIFKEFPYFNYAQSKALDDL
LYTDRNFVICAPTGSGKTVMFELAITRLLMEAPLPWLNIKVVYMAPIKALCSQRFDDWKE
KFGPIGLSCKELTGDTVMDDLFEIHHAHIIITTPEKWDSMTRRWRDNSIVQLVRLFLIDE
VHVIKDESRGATLEVVVSRMKTVQSSLWRLSENHDTVPPLRFVAVSATIPNAEDIAEWLS
DSKMPAVCMKIDEEQRPVKLRKIVLGFPCSDNQTEFRFDLTLNYKIASIIQTYSEQKPAL
VFCATRKGVQQAASVLAKDAKFLLSIEQKQRLQRSANSLRDSKLRDLLMYGVAYHHAGME
ISDRKIIEGAFAVGDLPVLFTTSTLAMGVNLPAHLVIIKSTMHYVGGVFQEYSETDILQM
IGRAGRPQFDTTATAVIMTRWSTREKYIQMLNGADIIESSLHRHLVEHLNAEIVLHTVTD
VTVALEWIRSTFLYIRALKNPTHYGFSSGLDKIGIEAKLQELCLKNLNDLSSFDLIRMDE
ANNFKPTETGRLMAWYYIAFDTVKQFFMIKGTETLNELITMISNCTEFLDVKLRTNEKKI
LNSLNKDKDKITIRFPMEGKIKTREMKINCLIQAQLGCIPIQDFTLTQDTGRIFRSGLRV
TRWLSDFLASSKNNFFAFLNSLILAKCFRCKLWENSLHVSKQLEKIGVSLSNAMVNAGLT
SFKKIEDTNARELELILNRHPPFGNQIKESVLHLPKYDLDIEQLPKYSDTLAEILVTIKL
TNYEQLQTKRTATDFHYVTLVIGDADNQVIFNQKIMDSVLLKTGNWMKKIEVKRAFKSED
ISINLISSDYGGRSKQEITYKKYGNRECNHRCKNKDVCGHDCCKTGVPPKSDMNGDSKFS
LYLADLRSRNSISSVLPVKRLKMQMLNQAQNVDLKQFVFTPKSLLPALPRSSNKQASSSP
SVDQLDNVNSLAVSQKQLQSWNYGKNNALDVDLELRDDVWDDIDDEKLVFASNFASRELD
ECEPLCQYTRSKATKDTSKDSRALQDETNIQNSVVPVVKSTSKANLSVQSGNTNMSSCQE
KKYSNPSQELQHVQCSSVSEIISHSSKFTRKEDFFIFTKDQEKEVDPRYLLDDEINDVKP
FLGIFDGIL
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgttcaactctgcagatatgatcttttcattggataatttgttttatgaaagaccagat
acaagacaaaggcatctagaaaatgaagagcctaagatttgttgtattgcacctgctcca
gctattgctgaaattccagctgcagaggagttgcagagagaactggaaaaaaacactgca
aacactcatatggggaaaaagcaccagaagtttatacaacaatgtaagagtaacatggag
gagggaaatgataaatcaccagcacctgttcattttggcatagcctctgaaaaagaagtg
cttcaattaagtgtaggagaaagagagaaaattagttttcggcatataagtctgaaaatg
gtttcattgtttctctctnctgaccaagataaatctgaaacaggagcagaggtttctcag
caacctggtgcaaatttttcacaaaataaaatattaagtaattttccagaaaacagtgat
gatgaaagtgttcattcaacattaagaaaaagcttatttaaaatgtctggttatatgtac
aaaaatacagaatttaattatagttctatggatgtgaaggaaagtgatccttacttaaat
acaaatgaaaagatgaaagaagtgagaaaagaaggtttatggagaaatagtcgtcataca
ccaataactaaagactcagattttactctgcaaggggtaaatgatggggacattacatct
aaaaatggaattgaaatgaaatcatttgctaatgcttcagagattctggatatgacagga
actacaggaaggaaattggaaattttgagggctgtcacagaaataccaacccaatttaga
agtatttttaaggagttcccatattttaactatgcacagtctaaagctttggatgatctt
ctttatacagataggaattttgtgatttgtgctccaactggctctggaaaaactgtaatg
tttgagttagctattaccagattactcatggaggccccactgccttggttaaatattaaa
gttgtttacatggctccaataaaagctctatgcagtcaacgttttgatgactggaaggaa
aaatttggacctataggactcagctgcaaggaactgacaggagatacagtgatggatgat
ttatttgaaattcatcatgctcacattattatcactacacctgaaaaatgggatagcatg
actagaaggtggagagacaactctatagtccagcttgtacgactgtttctcattgatgag
gtgcatgttataaaggatgaaagccgtggtgcaacattagaagttgtagtcagtcggatg
aagacagttcagtcttctctttggcgtctttcagagaatcatgacactgttcctcccttg
agatttgtagctgtttctgcaacaatcccaaatgctgaagatattgcagaatggctttca
gatagtaaaatgcctgctgtatgtatgaaaatagatgaggaacaacgaccagtgaagcta
cgcaaaattgttcttggttttccctgcagtgacaatcagacagaattcagatttgattta
actcttaactacaagatagctagtattatacaaacatactcagaacaaaaaccagcactt
gtgttttgtgccacaagaaaaggagtacagcaggccgcttctgttcttgcaaaagatgct
aaatttctactgagtatagaacagaaacaaagattacagaggtctgcaaattcattgaga
gattccaaactgagagatcttttaatgtatggtgtggcttatcatcatgcgggtatggag
atatctgacagaaaaataattgaaggagcttttgccgtaggagacttaccagtacttttt
actactagcaccttagctatgggagtcaatctacctgcacatctggtgattataaaatcc
acaatgcactatgttggaggagtgttccaagagtacagtgaaactgatattctgcaaatg
attgggagagcaggaaggcctcaatttgacactacagctacagcagttattatgactcgt
tggagtacaagggaaaagtatatacagatgttaaatggtgctgatataatagaaagcagc
ttgcacagacatcttgttgagcacttaaatgcagaaatagtgctacatactgtcacagat
gtcactgtagctttggaatggatacgatcaacgttcctgtacattagagccttaaaaaat
ccgactcattatggtttttcatctggattggataaaataggaattgaagcaaaattacaa
gagctgtgtttgaagaacttaaatgatttatcatcttttgatttgatcaggatggatgaa
gcgaataatttcaaaccaactgagactggaagattaatggcatggtattatattgcattt
gatacagtgaaacagtttttcatgattaagggaacagagactttaaatgaattgattaca
atgatctccaactgcacagaatttctggatgtcaagttaagaacaaatgaaaagaaaata
ctgaacagtttgaataaagacaaggacaaaataactatcaggtttccaatggaggggaag
ataaaaacaagagaaatgaaaataaactgtcttattcaggctcagctaggatgcattcct
attcaagactttactttgacacaagatactggcagaatatttagaagtggcttaagggtt
actagatggttatctgactttctggcatcatctaagaacaacttttttgctttcttaaac
tctttgattttagcaaagtgtttcaggtgcaaactttgggaaaattcacttcatgtatcg
aaacaattggaaaaaattggtgtatcactgtcaaatgctatggtaaatgctgggctgaca
tcatttaaaaaaatagaagacacaaatgcaagggaacttgaactgattttaaacagacat
cctccttttggaaaccagataaaagaatctgttttgcaccttccaaaatatgaccttgac
attgaacagcttccaaaatacagtgatacattggctgaaatcttagtaaccatcaaatta
acaaactatgagcagctacagacaaagagaacagcgacagactttcactatgttacattg
gtcataggagatgctgacaaccaagtcatttttaatcagaaaattatggattctgtgctg
ctgaaaactggaaactggatgaagaaaattgaagtgaaaagagcttttaaatcagaggat
attagtataaatctgattagttctgattatggaggcagatcgaaacaagaaatcacttac
aagaaatatggaaacagagaatgcaaccatcgctgtaaaaataaagatgtgtgtggacat
gactgctgtaaaactggagtacctccaaagtctgacatgaatggagattcaaagttttct
ttgtatctagctgatttaaggagcaggaactcaatttcatctgtactcccagtaaaacgg
ttaaagatgcagatgttaaatcaagctcaaaatgtggatctcaaacaatttgtttttaca
cctaaatctttgttgccggcattgccaaggtctagcaataaacaggcatcttcatcacct
tcagtggaccagctagataacgttaatagcttagcagtgtctcagaaacaactgcaatct
tggaattatggaaaaaataatgctttggatgtggatcttgaactgagagatgacgtttgg
gatgatattgatgatgaaaaattagtatttgctagcaactttgccagtagagaattagat
gagtgtgaaccactttgccaatatacaagaagcaaagccacaaaggacacttcaaaagat
tcacgcgcattacaggatgagaccaatatccagaactcagttgttcctgtggttaagagc
acatcaaaagcgaatttatctgtacagagtggaaatacaaatatgtccagttgtcaagaa
aaaaagtattcaaatccttcacaagagctgcaacatgtacagtgttcttcagtctcagaa
ataatttcacactcttctaaattcactaggaaagaggatttttttattttcacaaaagat
caggaaaaagaagtggatcccagataccttcttgatgatgaaatcaatgatgtcaagccc
tttcttggaatatttgatggcattttgtaa
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