Phaethon lepturus (White-tailed tropicbird): 104624568
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Entry
104624568 CDS
T08325
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
DUF4998
CBM_4_9
Motif
Other DBs
NCBI-GeneID:
104624568
NCBI-ProteinID:
XP_010290271
LinkDB
All DBs
Position
Unknown
AA seq
1473 aa
AA seq
DB search
MLIRTCFFFACLPVASHVWGRAGQGSGRLKLTVLSEDRLQMKWKETEGNINGYKVRVKPM
AGDSEQEVMLKTKTPKATVAGLSPVKEYTLQVYVLNGSQEALFAKRKFVIEELKNASQAR
NNRRNTGAASGKNLTSSGNSAAEHSGVAEATPPPLNTVLTHPAKDRAEKKRQKGTQPKGS
GETTRNKPSAETSMTEATPTTTKSSQRTPASSEREFLGKEKPTKDSLRRGSQFQCDTSAA
TDIVLLVDGSWSIGRNNFKLIKEFLSNLISPFSIAQDKIRVGLSQYSGDPRTEWDLGAFS
TRDQVLEAVRNLRYKGGNTFTGLALTHVLEQNLKPGAGARLEAEKLVILLTDGKSQDDAN
LAAQTLKNLGIEIFAIGVKNADEAELKQVASEPLELTVYNVLDFPLLSSLVGRLTQVLCT
RIKEKSNKENAGSTVKDIPVNTGPQLSPTDLKISAVTSKSMHLTWSPPLRPPKKYRIVYY
PSKGGIPKEVVLDGAVSSLQLSNLTSHTEYLVSVFPIYDTAVGDGLRGVTSTLPLSSPRS
LRVSELSHNSIRLSWKAAQGATQYLVLCSAAPDGAEDYTTEVKVAQPEVLLEGLSPSTEY
SVAVYAMYGEEASDPASIQETTLALSPPRYLSFSELSHASVRVSWEAASPAAKAHRVTYV
SSRGSNAGEVEVPGTATSTVLRPLSSLTQYFISVRSMYDEGDSFPLTGNVTTLKVPPPHA
LKVTELPGNSLRLQWEAVAASDVVVYQIKWSTVGGEKPQELSIAGNVATAVLPGLQKNTD
YKISIWAYYKDGARSDTVSVQHRTNSRSPPTNLFIDSETPTSLQVHWTPPDGRVQHYKIT
YSPVSDAGAQQTIMASGKSSSVTLQSLLPDRAYEVTLSAIHYTGESESTSTTGRTAPVLS
KLPSIRGFVPSKTEACPTIGSTEGSVRGFDMMEAFGLVEKEYASVKGVAMEPFVFSGSRT
FTLFRDTQLTQRTSDVHLFAIPPEHTISILLRLLPETPKEPFAVWQITDEDFQPLLGVNL
DPSKKSLTYFNHDYKADLQEVSFDQQEVKKIFYGSFHKVHVAVSHFKVKLYLDCKKIAEK
PINTIGSISTAGFIMLGKVTRTRGPRSGSASFQLQSLQIACSSVRAEEDRCCDLPALRDE
ETCPTLAPACSCTSGHPGLPGPPGPPGSPGRRGPPGEQGEPGPKGEPGPPGQVGPEGPSG
QRGSPGSQGITVQGPVGPPGIKGEKGDTGSPGMQGIPGVQGAPGRDGLQGAKGVRGLEGT
AGPPGPPGPRGFQGVTGSRGSSGEKGPPGDVGPTGLPGPKGERGEKGEPQSLATIYQLVS
QACERMIQTHVLKFDSFIHEHARKPVPVWEERLQAGEPGPPGPPGPPGSNGERGENGIPG
QPGKDGYPGERGAPGPKGEKGMSGASEEGIQGPRGRTGPPGEVVLGKPGPKGYPGNAGPQ
GFPGVRGQPGQPGYPGGCDISGCYGAGRRDFIP
NT seq
4422 nt
NT seq
+upstream
nt +downstream
nt
atgctgattcgcacttgtttcttttttgcctgcctgcctgtggcgagccatgtctgggga
cgagcgggccaagggtccggacggctgaaactcactgtcctttcggaagacaggctccaa
atgaagtggaaagagaccgaagggaacatcaacggctacaaagttcgggtaaagcccatg
gcaggggactcggagcaagaagtcatgctgaaaaccaagactcccaaagccacagtggca
gggctgagccctgtcaaggaatacacgctgcaggtctacgtgctcaacggctcccaggaa
gccctgtttgccaagaggaaatttgtgatagaggagctcaaaaatgcatcacaggctaga
aataaccgaagaaacacaggagctgcgtcaggaaagaatctcacctcttcggggaactca
gcagctgagcatagtggggtggcagaggccaccccaccacccctgaatactgtgttgaca
catccagcaaaggacagagctgaaaaaaaaaggcagaaggggactcagccaaagggctca
ggagaaaccacaagaaacaagcccagtgcagagaccagcatgacagaagcaacaccaaca
accacaaaatcatcccagcgcactcctgcaagctcggagcgggagtttctaggaaaagaa
aaacccacaaaggattcattgaggcgaggttcccagtttcagtgtgacacatctgcagcg
actgatatcgtcctgctcgtggatggatcctggagcatcggacgcaacaatttcaagctc
attaaggagtttctgagcaatctgatttccccattcagtattgcccaagacaagataaga
gtagggctgtcccagtacagcggcgatccccgcacagagtgggacctgggcgctttctct
acgagggaccaggtgctggaggccgtgaggaatttgcggtacaagggcggcaacaccttt
acaggtctggcactgacccacgtcctggagcagaatctgaaaccaggtgctggtgcccgg
ctggaggctgagaagttggtaatactcctgactgatgggaaatcccaggatgacgccaac
ctggctgctcagaccttgaagaacctgggcatagagatatttgccattggagtgaagaat
gcagacgaggcagagctgaagcaggtggcctcggagccactggagctcacagtgtacaac
gtgctggatttcccactgctgagctccctggttggcaggctcacccaggtcctgtgcacc
aggatcaaagagaagagcaacaaggaaaatgcaggcagcactgtgaaagatatccctgtg
aacacaggtccccagctgagcccaactgaccttaaaatatcagctgtgacctctaagagc
atgcacttgacctggagtcctcctctgagaccaccaaagaaataccggattgtgtattat
ccatctaagggtggtatccccaaagaggtggttttggatggagcagtctcctctttgcag
ctttccaatttgacctcacacacggagtatctggtgtcggtgtttcctatttatgacaca
gctgttggggatgggctgagaggcgtcacctccacattgcctttgtcttcccctcgctct
ctgcgcgtctctgagctgagccacaacagtatcaggctgagctggaaggcagcccaggga
gccacgcagtacctggtgctctgctctgcagcccctgacggagcagaggactatacaaca
gaggtgaaggtggcccagcctgaggtcctgctggaggggctgtcgcccagcacggagtac
tctgtcgcggtgtatgcaatgtacggggaagaggcgagtgatccagccagcatccaggaa
accaccttggccttgagtcctcccagatacctgagcttctccgagctcagccatgcatcg
gtccgagtcagctgggaggctgcgtctccggctgcgaaagctcaccgtgtcacctacgtt
tctagcagagggagcaacgctggggaggtagaggttcctggcactgcaacatccaccgtc
ctgagacctttgtcctctctcacccaatacttcatcagtgtccgatctatgtatgatgaa
ggggactcctttccactcaccggcaatgttaccaccttaaaggtccccccaccgcatgca
ctgaaggttactgagctccccgggaatagcctccgactgcagtgggaagccgtcgctgcc
tccgacgtggttgtctatcagatcaaatggagcacagtcggtggagagaagcctcaggag
ctctccattgctggaaatgtggcaactgctgtcctgccaggcttacagaagaacaccgac
tataaaatatccatctgggcctattacaaagacggtgctcgaagtgacacggtttctgtt
cagcacaggaccaattcccggagcccacccaccaacctcttcatcgactccgagaccccc
accagcctccaggtccactggaccccccccgacggccgcgtacagcactacaaaatcacc
tacagccctgtttctgacgccggtgctcagcaaacaatcatggcttctggcaaaagcagc
agcgtgaccctgcagtcgctgctgcctgatcgagcctacgaggtgaccctttctgccatc
cattacacgggagagagcgagagcacatccacaacgggacggacggctcctgtgctgtct
aaattgccttcaatacgaggattcgttccatctaaaacagaggcctgccccaccatcggc
tccaccgaaggctccgtacgaggatttgatatgatggaagctttcggcttagtagagaag
gaatacgcctctgttaaaggcgtagctatggagccattcgtgttcagcggttcccgtacc
ttcaccctgttcagagacacgcagctcacccagaggaccagcgatgtccacctctttgca
atcccacccgagcacaccatcagcatcctcctgcgcctcctgcccgagacccccaaggag
cccttcgctgtgtggcaaataacagacgaagacttccagcctctccttggtgttaacctt
gaccccagtaagaaatccttgacgtatttcaaccatgactacaaggctgatttacaggaa
gtctcctttgaccagcaggaagtgaagaagatattctatgggagctttcataaggtgcac
gtggctgtgagccacttcaaggtcaaactctacctggactgtaagaaaatagcagagaaa
cccatcaacaccatcggcagcatctccaccgctggcttcatcatgctgggaaaagtgacg
aggaccagaggaccccggagcgggtctgcatcgttccagctgcagtctttgcagatcgcc
tgcagcagcgtaagggcagaagaagacagatgctgtgatctccctgcactgagggacgag
gagacctgccctaccttagctcctgcctgctcttgtacttctggccacccgggcttgcca
ggacctccagggccccctggcagccctggcaggagaggacccccgggagagcagggtgag
ccgggacccaagggtgaaccaggcccacctggacaagtagggccagagggtcctagtggc
cagcgaggctctccaggttcccaaggaatcacggttcagggtcctgtgggaccaccagga
attaaaggagagaaaggagacactggaagtcctggcatgcagggcattcccggtgtgcag
ggagctccaggcagggatggtcttcaaggcgcaaagggggtgaggggactagaaggcaca
gctgggcctccaggacctcctggaccacggggtttccaaggagtgacaggctcccgaggc
agcagtggagagaaaggacctccgggtgatgttgggccaacagggctgccgggtccaaaa
ggagaaaggggagagaaaggggagccacagtccttggccacaatttaccagctcgttagc
caggcttgtgagcggatgattcaaactcatgtgttgaaatttgactcattcattcatgaa
catgcaaggaagcctgttcctgtttgggaagaaaggttacaagcaggagaaccaggacca
ccaggtcctccaggtccccctgggagcaacggagaaagaggagaaaatggcatccctgga
cagccaggcaaagatgggtatcctggagaaagaggtgccccagggcccaaaggagaaaaa
gggatgtctggagccagtgaggaagggatccaaggacccagaggcagaacaggcccacca
ggagaagttgtgctggggaaaccaggtccgaagggttaccctgggaatgctggtcctcaa
ggttttcctggtgtcagagggcagcctgggcagcctggatatccagggggttgcgatatc
tctggatgttacggggcaggtagaagagatttcatcccctga
DBGET
integrated database retrieval system
