Phaethon lepturus (White-tailed tropicbird): 104625447
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Entry
104625447 CDS
T08325
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
Pathway
plet03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
plet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
104625447 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plet03400
]
104625447 (LIG3)
Enzymes [BR:
plet01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104625447 (LIG3)
DNA repair and recombination proteins [BR:
plet03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
104625447 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Synaptonemal_3
aRib
Motif
Other DBs
NCBI-GeneID:
104625447
NCBI-ProteinID:
XP_010291372
LinkDB
All DBs
Position
Unknown
AA seq
994 aa
AA seq
DB search
MPAGGRTLSQAARALGRGTGLFSPHTQVSLPRPYLCCVGLPGASPKYWYQLLLRGVSLWS
TGRNRGGGAGAFHFSLLLHTWLRQACTAAEDMAEQRYCVDYAKRGTAGCKKCKEKIVKGM
VRIGKIVPNPFTESGGDMKEWYHVKCMFEKLEKARATTKKIEDITDLEGWEELQDGEKEL
INKHISEANSKAASTPKKKVIVQAKLTATGQITTKDPLALITPSPKKFSGFTAKPKNSED
VSANSSHKSSLSAKKCDLKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLKKGSGGDG
FHGDVYLTIKLLLPGVIKIVYNLNDKQIVKLFSRIFNCSQEEMVRDLEQGDVSETVRLFF
EQSKSCPPAAKSLLTIQEVDEFLIQLSKLTKEDDQQSVLQHITRRCTGNDLKCIIRLIKH
DLKMNAGAKHVLDALDPNAYEAFKASRNLQDVVERVLKNQQEAEKVPGLKRTLSVQASLM
TPVQPMLAEACKSIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKV
AHFKDYIPQAFPGGQSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCI
YFNNISLMDRPLCERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLV
LKDTKGNYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDP
KSEKWCTVTKCSGGHDDATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKK
APVWEITGAEFSKAEAHTADGISIRFPRCTRIRDDKDWKTATNLQQLKELYQLSKEKADF
SVVAGEEDESTAGSSGENEGNSRSSTPHSTIKTPPSKSPAKAQKPEESKAVIGSPQKSEE
KRGEKRKASEMDDNGKKMLLDIFTGVKLYLSPSVKDFDKIRRYFIAYDGDLVPEFDTASA
THVIGDIDENPGAKRVSPKWIWECIRKRRLVAPC
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcaggcggcaggactctatcacaggctgcccgggcactcggcaggggcacagga
cttttctccccccatacacaggtctccttgccaagaccctacctttgctgtgttggtctc
cccggggccagccccaagtactggtaccagctgctgttaaggggcgtatctctctggtcc
acaggcagaaatcggggtggtggtgctggggctttccatttctccctgcttttgcacact
tggctccgccaagcctgcacagctgcagaggacatggcagagcagaggtactgtgtggac
tatgccaagcgtggcacggcaggctgcaagaagtgcaaggagaagatcgtgaaaggaatg
gtgcgcattggaaagattgtgcccaacccttttacggagtctggtggggacatgaaggag
tggtaccatgtgaagtgcatgtttgagaaactagagaaggctcgggccaccaccaagaaa
atcgaagacatcacagacttggaagggtgggaagagctacaagatggggagaaagaatta
atcaacaagcacatctcagaagctaattccaaggctgcaagtacaccgaagaaaaaagtg
atcgtccaagctaagcttactgccacaggacaaataaccacaaaagatccattggctctc
atcactccatcaccaaagaagttctctggcttcacagccaagccaaagaactcggaagat
gtctccgcaaactcttcccataagtctagcctatctgcaaaaaaatgtgatctgaagcac
aaagactgcttgctgcgagagttcaggaagctctgtgccatggtagctgaaaagcctagc
tataacgtgaaaacgcagatcatccaggattttctgaagaagggatctggaggagatggt
tttcatggcgacgtatacctgaccattaagctgctgttaccaggcgtcattaaaattgtt
tacaacttgaacgataagcagattgtaaagctgtttagtaggatttttaactgcagtcaa
gaagaaatggtccgggacctggaacagggagatgtttccgagactgtacgcctcttcttt
gaacagagcaagtcttgccctccagcagccaaaagtctcctgaccatccaagaggtagat
gaattcctaatccagctatcaaagcttactaaggaagatgaccagcaaagtgtgctgcaa
catatcactcgcaggtgtacaggcaatgacctgaaatgcatcatcaggctaattaagcac
gacttgaaaatgaacgctggagcaaagcatgtgttggatgctttggatcccaatgcgtac
gaggcgttcaaagcatcacgcaacctccaggatgtggtggagcgagtcctgaagaaccag
caggaggctgagaaggtgccaggtctgaagcgaaccctcagtgtgcaggcctctctgatg
accccagttcagcccatgctggctgaagcctgcaagtcaattgagtacgccatgaagaag
tgcccaaatggcatgtatgcagagatcaaatatgatggtgagcgggtgcaggtccataaa
aatggagatcatttcagctacttcagcagaagcctcaaacctgtcctccctcacaaagta
gcccattttaaggactacatcccccaggcgttccctggtgggcaaagtatgatcctggat
tcagaagttcttctgattgataacaaaactggcaagccgcttccttttgggactcttggt
gtgcacaagaaagctgctttccaagatgccaatgtttgcttgtttgtgtttgactgcatc
tatttcaacaacatcagcctgatggacaggcctctgtgtgaacgtcgtaagtttctccac
gataacatggttgaaatcccaaaccggatcctcttctctgagatgaagcatgtcacaaaa
gcttcagatctggcagatatgatcacccgagtcatccgtgagggactggaaggactggtg
ttgaaagatacaaagggtaattatgaaccaggaaaacgacactggctgaaagtgaaaaag
gactacttaaatgagggtgcgatggctgacacagcagacctggtagtgctaggagctttc
tacggacaaggcagtaaaggtgggatgatgtccatcttcctcatgggctgctatgatccc
aagagtgagaaatggtgcaccgtgaccaagtgttccggtggccatgatgatgccaccttg
gcacgtctgcaaacagagctggatatggtgaagatcagcaaggatcctagtaaaatccca
aggtggctaaaaattaacaaaatctactacccagacttcatcgtccccgatccaaagaaa
gccccagtgtgggagatcacaggggctgaattctcgaaagctgaagcccacaccgcagat
gggatctccattcgcttccctcgctgcacccgcattcgagatgacaaagactggaagacg
gccaccaacctccagcagcttaaggagctgtaccaactctccaaagagaaggctgatttc
agcgttgttgctggggaggaagatgagtccacggctggcagcagcggagagaatgaggga
aattccaggtcttccacaccacacagcactattaaaactcccccaagcaagtcacctgca
aaagcccagaagccagaagagagcaaagcggtcattggatcccctcaaaaatcagaggag
aaacgaggggagaagagaaaagcatctgagatggatgacaatggaaaaaagatgctgctg
gacatattcactggtgtgaagctgtatctgtcgccctctgtgaaggattttgacaaaatc
cggcggtactttatagcatacgatggggatcttgtgccagagtttgacacagcctcagca
acgcacgtcataggggacattgatgagaatcctggtgctaagcgtgtgtctcccaagtgg
atctgggaatgcatccggaaacggagactggtagccccgtgctag
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