Phaethon lepturus (White-tailed tropicbird): 104625805
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Entry
104625805 CDS
T08325
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
Pathway
plet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104625805 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plet03019
]
104625805 (PARN)
Enzymes [BR:
plet01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104625805 (PARN)
Messenger RNA biogenesis [BR:
plet03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104625805 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
R3H
T6PP_C
Motif
Other DBs
NCBI-GeneID:
104625805
NCBI-ProteinID:
XP_010291883
LinkDB
All DBs
Position
Unknown
AA seq
378 aa
AA seq
DB search
MDFLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQGF
DFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNATKCPVTIPEDQKKFI
EKVVEQIEDLLKNEENESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIVI
SKVNEEERKRREQQKQAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTIHQFY
CPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKEVPFSPPKVE
SAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFFNK
LFLMRVMDIPYLNLEGPD
NT seq
1135 nt
NT seq
+upstream
nt +downstream
nt
atggattttttgctctttcagtttggcctttgcacttttaaatatgatcacacagaagaa
aagtatataatgaagtcatttaatttctacatttttccaaaaccctttaacagaagttca
ccagatgtcaagtttgtctgtcagagttcaagtatagattttttagcaaaccaaggattt
gattttaataaagtttttcgcaacggaattccgtatttaaatcaggaagaagaaagacaa
ctaagggaacagtatgatgaaaaacgttctcaggccaatggtgcaggatctctgtcgtac
atttctcctaatgccacaaagtgtcctgtaacaattcctgaagatcagaaaaaattcatt
gagaaagtagtggaacagatagaagacttactaaagaatgaggaaaatgaaagtttggaa
ctggagccatgtacaggatttcagaggaaattaatttatcagaccttgagctggaagtat
ccaaaaggtatccatgttgaaactctggagtcagataagaaggagagatacattgttatt
agtaaggtaaatgaagaagaacgaaaaagaagagaacagcagaaacaagcaaaagaacag
gaagaactgaatgatgcagtaggattttcaagagtcattcatgccattgctaattctggc
aagcttgttattgggcacaatatgctactggatgttatgcataccatacatcagttctat
tgtcccctacctgatgacctaagtgagttcaaggaagtaacatcatgtgtctttccccgg
ctattggatactaaactgatggcaagtacgcaaccttttaaggagatcattaataataca
tcccttgcagaactggaaaagcgtttaaaagaggttccattcagccctcctaaagttgaa
agtgcagaggggtttccaagttacgatacagcttccgaacaacttcacgaagcgggatat
gatgcttacattactggactgtgcttcatctccatggctaatttcctaggttcattcctc
agtcctccgaaaaaccatgtgtctgctagatcaaaactcattgaacctttttttaacaag
ctatttcttatgagagtaatggacataccatatctcaatttggaaggaccagact
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