Phaethon lepturus (White-tailed tropicbird): 104626130
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Entry
104626130 CDS
T08325
Name
(RefSeq) serine/threonine-protein kinase SMG1-like
KO
K08873
serine/threonine-protein kinase SMG1 [EC:
2.7.11.1
]
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
Pathway
plet03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
plet00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104626130
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
plet01001
]
104626130
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plet03019
]
104626130
Enzymes [BR:
plet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
104626130
Protein kinases [BR:
plet01001
]
Serine/threonine kinases: Other
PIKK family [OT]
104626130
Messenger RNA biogenesis [BR:
plet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
104626130
mRNA cycle factors
Common to processing body (P body) and stress granule
104626130
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMG1
SMG1_N
HEAT_ATR
HEAT
FAT
Motif
Other DBs
NCBI-GeneID:
104626130
NCBI-ProteinID:
XP_010292271
LinkDB
All DBs
Position
Unknown
AA seq
1922 aa
AA seq
DB search
MDQVVIKEHGKRRLPLLCKPVVESWVIKCEQVSLQKALPKDRTKRVCRSSQGNNRLMYFT
TMENFAKRSKAVLWEVRTDSASADQDNLKYSSSRDRGSSASYGLQPSNSAVVSRQRHDDI
RVHTDIQNEEKGGYSVNGGSGENTYGRKSLGQELRVNNVTNPDFTSVPHGNRALATKDMR
KSQERSLSYSDESRLSNLLRRITREDDRDRRLATVKQLKEFIQQPENKLVLVKQLDNILA
AIHDVLNESSKLLQELRQEGACCLGLLCASLSYEAEKIFKWIFSKFSSSTKDEVKLLYLC
ATYKALETAGEKKAFSSLMQLVMTSLQSILENVDTPELLCKCVKCILLVSRCYPHIFSTN
FRDTVDILVGWHIDHTQKPSLTQQVSGWLQSLEPFWVADLTFSTTLLGQFLEDMEAYAED
LSHVASGESVDEDIPPPSVSLPKLAALLRVFSTVVRSIGERFSPIRGPPITEAYVTDVLY
RVMRCVTAANQVFFSEAVLTAANECVGVLLGSLDPSMTIHCDMVITYGLDQMDSCQSCGT
DYIISVLNLLTLIVEQINTKLPSSFVEKLFIPESKLLVLRYHKEKEVVAAAHAVYQAVLS
LKNIPVLETAYRLILGEMTCALNSLLYSLHLPEACCEIQHDSFKKRIFNVDNAKFVVIFD
LSALSTIGNAKNSLIGMWALSPTVFALLSKNLMIVHGDIAVHFPAVQYAVLYTLYSHCSR
HDHFISSSLSSSSPSLFDGAVISTVTTATKKHFSIILNLLGLLLKKDNLTQDTRKLLMTW
ALEVAVLMKKSETYAPLFSLPCFHKFCKGLLANTLLEDVNICLQACSSLHALSSSLPDDL
LQRCVDVCRVQLVHSGARVRQTFGKLLKSIPLDVVLSNRTHTEIQEISLAIRSHMSKAPS
NTFHPQDFSDVISFILYGNSHRTGKDNWLERLFYSCQRLDKRDQPTIPRNLLKTDAVLWQ
WAVWEAAQFTVLSKLRTPLGRAQDTFQTIEGIIRSLAAHTLNPDQDVSQWTTADNDEGHS
SNQLRLVLLLQYLENLEKLMYNAYEGCANALTSPPKVIRTFFYTNRQTCQDWLTRIRLSI
MRVGLLAGQPAVTVRHGFDLLTEMKTNNTISQGNELEVTIMMLVEALCELHCPEAIQGIA
VWSSAVVGKSLAWINSVAQQAEGRFEKATAEYQEHLCSMTGVDCCITGFDKTVLKLANSN
SVNNASPKHSLNGETRKTVLTKPSDSSPEVINYLGNKACECYISIADWSAVQEWQNMVHD
LKKSNSNTSINLKADFNYIKSLSSFESGKLTECTEQLELLPGENINLLAGGSKEKIDMKK
LLPNMLSPDPRELQKAVEVQLLRSSVCLATAVNHIEQEQKWQSISENVIKYLKQTSRIAI
GPLRLSTLTVSQSLPVLSTLQLYCSSALENTVSNRLTSEDCLIPLFNDALRSCKQHDVRP
WMHALRYTVYQNQLMEKLKEPTVPIKSHLMELGLTAAKFARKRGNIALATRLLAQCSEVQ
LGKTTTAQDLVQHFKKLSAPGQIDEKWGPELDIEKTKLLYTAGQSTHAMEMLSSCAISFC
KSAKAEYAVAKSILTLAKWIQAEWKEISGQLKQVYRARQQQNHTGLSTLSKNIYNLIDLS
SVNTLEEEYPRIESESTVNIGVGEPDFILGQLYHLSSVQAPEVAKSWAALASWAYRWGRK
VVDNASQGEGVRLLPREKSEVQNLLPDNVAEEDKEKIYGILGQAVCRPAGIQDEDMTLQI
AENEDNEEDDMVDVIWRQLLTSCPWLSDLDENATEGLIKVWRKVVDRIFSLYKLSCSAYF
TFLKLNAGQVPLDEDDPRLHLRNTSEQSTDDVIVMATLRLLRLLVKHAGELRQYLEHGLE
TTPTAPWRGIIPQLFSRLNHPEVYVRQSICNLLCRVAQDSPHLILYPAIVGTISLSSESQ
TS
NT seq
5767 nt
NT seq
+upstream
nt +downstream
nt
atggatcaggtggtgataaaagagcatggcaaaagacggttgccattgctgtgcaagcca
gtggtggaaagttgggtgataaagtgtgaacaggttagcttgcagaaagctcttcccaaa
gacagaacgaagcgagtgtgtcgttcttcccagggaaacaataggcttatgtattttacc
acaatggaaaattttgcaaaacgttcaaaggctgtactgtgggaagtgagaactgacagt
gcatcagctgaccaggacaatttaaaatactcttcatccagagatcggggcagttctgcc
tcctatggattacaaccctcaaattcagctgtggtgtctcgacaaagacacgatgatatc
agagtccacactgacatacagaatgaagaaaaaggtggctacagtgtcaatggaggatct
ggggaaaatacttatggtcggaagtcgttggggcaagagctgagagttaacaatgtgacc
aatcctgattttaccagtgttccacatgggaatcgtgctttagccacaaaagacatgagg
aaatcacaggagcgatcgttgtcttattctgacgagtctcgactgtcaaatcttcttcgg
aggattactcgggaagacgacagagaccgaagactggctactgtaaagcaattgaaagaa
ttcattcagcaaccagaaaacaaactggtactagttaaacaactggataatatcctggct
gccattcatgatgtactcaatgaaagtagcaaattgcttcaagaactgagacaggaagga
gcttgttgtcttggccttctttgtgcttctctgagctacgaggctgagaagatctttaaa
tggatttttagcaaattcagctcatccacaaaagatgaagttaaacttctgtatttgtgt
gcaacctacaaggcactagagactgcaggagaaaagaaagccttttcatctttaatgcag
cttgtaatgaccagcctgcagtccattctagaaaatgtggatacaccagagttactgtgc
aagtgtgtcaagtgcatccttttggtgtcccgatgctacccacacattttcagcaccaat
tttagggacaccgtggacatactggttgggtggcatatagatcacactcagaaaccttca
ttgacgcaacaagtgtctggatggctgcagagcttggaacccttttgggtggctgatctt
actttttctaccacgcttttgggtcagtttttagaagatatggaagcttatgctgaggac
ctcagccatgtggcttctggggaatcagtagatgaagatattcctcctccttcagtatca
ctacctaaactggctgcacttcttcgggttttcagtactgttgtgaggagtattggggaa
cgcttcagcccaattagaggaccaccaattacggaagcatatgtaactgatgttctgtac
agagtaatgagatgtgtgactgcagcaaaccaagtattcttttctgaagccgtacttaca
gctgccaatgagtgtgttggtgttttacttggcagcctagatccaagtatgaccatacac
tgtgacatggtcatcacatatggattagatcaaatggacagttgtcagagttgtggcact
gattatatcatttcagtcctgaatttgttgacgctgattgttgaacaaataaatacaaaa
ctaccatcatcatttgtagagaagttatttataccagagtctaaactacttgttcttcgt
tatcataaggagaaggaggttgttgcagcagcccatgctgtataccaagccgtattgagc
ctgaagaacattcctgttttggagactgcatacaggttgattctaggagaaatgacctgt
gctctaaatagccttctctatagtttacatcttcctgaggcctgttgtgaaatccagcat
gactctttcaagaagcgtatattcaatgtggataatgcaaagtttgttgttatatttgac
ctcagtgctctaagtactattggaaatgctaaaaactcattaattgggatgtgggccctt
tcgccgactgtgtttgcactactgagtaaaaatctgatgattgttcatggtgacatagca
gttcattttcctgctgtccagtatgcagtactctatacattatattcacactgttccagg
cacgaccatttcatatccagtagcctcagttcttcctctccctctctgtttgatggagca
gttataagtactgtaaccacagcaacaaaaaaacatttctcaatcatactaaaccttttg
gggctactgcttaagaaggataaccttactcaagataccaggaaactacttatgacatgg
gctttggaagtggctgttctgatgaaaaagtcagaaacatatgcaccgttattttctctc
ccgtgttttcataagttttgtaaaggacttttagcaaacacccttctggaagacgtgaac
atttgtcttcaagcatgtagtagcctccacgccttgtcttcctctctcccagatgacctt
ttacaaagatgtgttgatgtgtgtcgtgttcaactagtacatagcggtgctcgtgtaaga
caaacttttggaaaacttctgaagtcaattcctttagatgtcgtgttgagtaaccgtacc
cacacagaaatacaagaaatttcgttggctataagaagtcatatgagcaaagctccaagt
aatacattccacccgcaggatttctctgatgtcattagttttattttgtatggaaactct
caccgaaccgggaaggataattggttagaaagattattctatagctgtcaaagactagat
aagagagatcaaccaactatccctcgtaatctattgaagactgatgctgttctttggcag
tgggctgtttgggaagcagctcagttcactgttctttcgaagttacgaactcctctgggt
agagcccaagatacatttcaaacaattgaaggtattattaggagtcttgcagcccataca
ttaaaccctgaccaagatgttagccagtggactactgcagacaatgatgaaggacacagt
agcaaccagcttaggcttgttctccttctacagtatctggagaacttggaaaaattgatg
tacaatgcttatgaaggatgtgccaatgcccttacctctccgcccaaggttatcaggaca
ttcttttacactaatcgtcagacatgccaagattggctaacgcggattaggctttccatc
atgagagttgggttgctggctggccagcctgctgtgacagtcaggcatggttttgattta
ctcacagaaatgaaaacgaataatactatctctcagggaaatgaattggaagtgacaatt
atgatgctggtagaagcactctgtgagcttcactgtcctgaagctattcagggtatcgct
gtctggtcttctgctgtagttgggaagagtctcgcctggatcaattctgtagctcaacaa
gcagaagggcggtttgaaaaagcaactgcggaataccaggagcacctgtgctccatgaca
ggagtggattgctgcataacaggctttgacaaaactgttctgaagttggccaattcaaac
agcgtgaataatgccagcccaaagcattccttgaatggagaaactagaaaaactgttctg
actaagccaagtgactcttcacctgaggttataaactacttgggtaacaaagcatgtgaa
tgttacatttccattgctgactggtccgctgttcaggagtggcaaaatatggtccatgac
ttgaagaaaagcaatagcaatacctcaatcaatctgaaggcagattttaactacataaaa
tctttgagcagctttgaatctggaaaacttactgaatgcactgaacaactagaattatta
ccaggagaaaatatcaacctacttgcagggggatccaaagaaaaaatagacatgaagaag
ctccttcctaatatgctaagtcctgatccaagagaacttcaaaaagcagttgaagtacag
cttttgagaagttcagtatgtctggcaacagctgtaaaccacatagaacaggagcaaaaa
tggcagtcaatatctgaaaatgttattaagtacttaaagcaaacatcacggattgctatt
ggacctttaagactttccacactcactgtgtctcagtctttaccggtcttgagcactctt
cagttatattgttcttctgctttggaaaacactgtatccaataggctgacatcagaggac
tgtcttatacctctcttcaatgatgctttgaggtcttgtaaacagcatgatgtaaggcca
tggatgcatgcactgaggtacacagtataccagaatcaattgatggaaaaacttaaagaa
ccaacggtcccaattaaaagccatctaatggagctgggtttaacagcagcaaaatttgca
cggaagcgaggaaatattgctctagctacacgactgcttgcccagtgcagtgaagttcag
ctaggaaaaaccaccacggcacaagacttagtccaacacttcaaaaaattgtctgcgcca
ggtcagatagatgaaaaatggggtcctgaacttgatattgagaagacaaaattgttatac
acagcaggtcagtcaacacatgccatggaaatgctgagctcttgtgccatatctttttgc
aaatctgccaaagctgaatatgcagttgctaaatctattctcacgctggccaaatggatt
caagcagaatggaaagagatttcaggacagttgaaacaagtgtatagagctcgacagcag
cagaaccacactggtctgtctaccttgtctaaaaacatatataatttgattgatctctca
tctgttaatacactggaagaagaatatcctaggattgaaagtgaatctacagtaaatatt
ggagtcggagaacctgacttcatcttgggacagctgtatcacttgtcttcagtacaggca
cctgaagtagccaagtcttgggcagcccttgctagctgggcttacagatggggccggaaa
gtagttgataatgccagtcagggagaaggtgttcgtctgctgccccgggaaaaatctgag
gttcagaacttgcttccagacaacgttgcagaggaagataaagagaaaatctatgggatt
cttgggcaggcagtgtgtcgtccagctgggattcaagatgaagatatgactctacaaatc
gctgagaatgaagacaacgaagaagatgatatggtggacgttatatggcgtcaattatta
acaagttgtccctggctttcagatcttgatgaaaatgcaacagaagggttaattaaagtg
tggaggaaagttgtagacagaatcttcagtctctataagctctcctgcagtgcatatttt
actttcctcaaactcaatgctgggcaggttccacttgatgaagatgatcccaggctgcac
ttaagaaatacttctgagcaaagcacagatgatgttattgtgatggcaaccctaagactg
ttaagattgcttgtgaaacatgctggagaacttagacagtatttagagcatgggctagaa
actacgcctactgctccttggagaggtattattcctcagcttttctcccgcctgaatcac
ccagaagtttatgttcgtcagagtatttgcaatttattgtgtcgagtggctcaagattct
cctcaccttatactataccctgcaatagtgggtaccatttcacttagcagtgaatcccag
acttcag
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integrated database retrieval system
