Phaethon lepturus (White-tailed tropicbird): 104626564
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Entry
104626564 CDS
T08325
Symbol
CIITA
Name
(RefSeq) LOW QUALITY PROTEIN: MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
Pathway
plet05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
plet00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
104626564 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
plet01001
]
104626564 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
plet04054
]
104626564 (CIITA)
Enzymes [BR:
plet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
104626564 (CIITA)
Protein kinases [BR:
plet01001
]
Serine/threonine kinases: Other
TAF1 family
104626564 (CIITA)
Pattern recognition receptors [BR:
plet04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
104626564 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
Motif
Other DBs
NCBI-GeneID:
104626564
NCBI-ProteinID:
XP_010292811
LinkDB
All DBs
Position
Unknown
AA seq
968 aa
AA seq
DB search
SKRQIMDSAFVSENGYLDLLHNDIDPLHLYTLFDPKSSGNEEGDFSADPEVDASNYDQFN
NTDFLCTMENGENGDELYLCSNTIEAYARIAELAEYVLKDQQEKQVEDTFAGNLILDEMA
AESTEKFTDVKMQKCHKRTFPGFAESCSDASEPKYKKIVEVPAGNGSFLAMPLNSHPASS
TSLTNQHMSFSVPATNALERSFIIPGSSALPVSVEGSQENTGFADLPQQILSFVLGSGTS
DVIIHPMLTSCMETLISPSFPVSLCGLEMFKEVRVPMIPSEEPFKRPKPVEAFCTSLMDY
FRDVCKSVAMEREVTLDHLFIDGTLVQSQTETKTGKNSVKAMEKELVTCSLQGKEKAALK
RSQIFQIPAGKDLETKVIVVLGKAGXXXXXXXXXXKICQDWSNGEFSQFEFVFWFDCKQI
SLPEKRYSLKDLLLEFFVKPQEGSKEIFEYILQNPAKVLLVLDGFEGLQDHENLPRCSAT
QPEKDLCSIKELLSGLTQKKILNGCTLLLTARPKDKVNQYVSKVDKTIEIVGFSPQQREL
YITKYFEGLPYCDNALKLIKECEYLFSHCYSPVMCRFVCFLCETILQMGDKCLPSTLTTV
FLKFVQQKIIPLQPDVTAMQNQESLATLARIAWYLGEKHQSAMKSDFLPSKEVKEFALKH
GFFLPFAFPRHSGSGEEEFGSTFSDFVIQNFLGALHLTLAEEIKDKSLTKYLSFPSKKKK
PYSWLDLVPRLLAGLLFLQDDPYFCSLSNKDVKQSVKKQKRLLKYIRRLQIDELCPERLL
ELLHCIYETQSNYLLQHVALRLKTDLSFLGVVLTPPDVHVLHSILKRSGKEFSLDLRNSS
IDMQGLKDFVGLKNVASFRASLSDTVRLWKSLEQTKDYELLRASTEKFVLDPFKAKTMKD
ISDLSDLVEMQEKMINCVQDASGCSSYEIPAIKKLRKLEFALGPVCGLQGFLKLVEILAA
FPSLQHLE
NT seq
2909 nt
NT seq
+upstream
nt +downstream
nt
acagcaagagacaaattatggattcagcatttgtgtctgaaaatggctatcttgatttgc
tgcacaatgatattgatccactgcatctgtatactctctttgaccccaagtcatctggaa
atgaagaaggtgacttctctgcagatcctgaagttgatgccagcaactatgatcagttca
ataatacagatttcctgtgtacgatggaaaatggtgaaaatggagatgaattgtatctct
gttccaacaccatagaagcttatgctagaatagctgaattagcagaatatgtgctcaaag
atcagcaggagaagcaggtggaagacacttttgcagggaatcttattttggatgaaatgg
ctgctgaaagcactgagaaatttactgacgtaaagatgcagaaatgtcacaaacgaacct
tcccaggctttgcagagagttgctctgatgcttcagaacccaaatacaagaaaattgtgg
aagtgcctgcagggaatggcagtttcttagctatgcctctcaacagccatccagctagct
ccacctcactaactaaccagcacatgtctttttctgttcctgctaccaatgcgttggaaa
gaagtttcataattcctggatcttcagcactacctgtcagtgtggaagggagccaagaga
atacaggctttgcagatctccctcagcagatacttagctttgttcttggaagtggcacat
ctgatgttataatacatccaatgctgacttcttgcatggaaacactgatatccccaagtt
ttccagttagtttatgtggtttagaaatgttcaaagaagtccgagttcccatgattcctt
ctgaagaacctttcaaaaggccaaaaccagtggaagctttctgtacatcacttatggatt
atttccgagatgtgtgcaaatctgtggccatggagcgtgaagtaactctcgatcacctgt
ttattgatgggacacttgttcaaagccaaactgaaaccaagactgggaagaatagcgtaa
aagcaatggaaaaggagctggtaacatgcagcctgcaagggaaggaaaaggcagccctta
aaagaagccaaatatttcaaatcccagcaggtaaagacttagagactaaagtgattgtgg
tgctgggaaaagcaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagatctgccagg
actggtccaatggagagttttctcaatttgaatttgtattttggtttgactgcaaacaaa
taagcttgcctgagaagcgatatagcctgaaggacctgctgcttgaattttttgtgaaac
ctcaagagggaagcaaagagatctttgagtatatattgcaaaatcctgctaaagtccttc
tggttcttgatggttttgaagggttgcaagaccatgagaatcttcctcgttgctcagcca
cccagcctgaaaaagacttgtgcagtatcaaggagctgctttcaggactcacccaaaaga
agatacttaatggttgtactttattacttacagcaagaccaaaagacaaggtgaaccaat
atgtgtccaaagtggataagactattgaaatagtaggattttcccctcagcagagagaat
tgtacataaccaaatacttcgaaggtttaccctactgtgataatgccctgaaattaatca
aagagtgtgagtacttgttcagtcattgctacagccctgttatgtgtcgatttgtttgtt
ttctctgtgagacaatacttcaaatgggagacaagtgccttccttcaactcttactacag
tcttcctgaaatttgttcagcaaaagataatacctctgcaaccagatgttacagccatgc
aaaatcaagagagtcttgctacactagcccgtatagcctggtatcttggagaaaagcacc
aaagtgccatgaaaagtgattttcttccttctaaggaagttaaagaatttgctctgaaac
atggatttttcctgccatttgcattccccagacattcaggtagtggagaagaggaatttg
ggagcacattctctgattttgtcattcagaatttcttgggtgcgcttcaccttacattag
cagaagagatcaaggataaaagtctaacaaagtacctgtcttttccatccaagaagaaaa
aaccttatagctggttagacttagtccctcgacttttggctggattgttgttcctccagg
atgacccctacttctgctccctttcaaacaaggatgtaaaacaatcagtcaagaagcaga
aaagactcttgaaatatattagaaggctgcagatagatgagctctgtccggagaggttac
tcgagcttttacattgtatttacgaaacacaaagcaattatcttttgcagcatgtggcct
taaggctcaagacagacctgtcttttctgggcgtagttcttacaccacctgatgtccatg
tactgcactctattttgaaaaggtcaggaaaagagttttccttggatttgcgaaacagca
gcattgacatgcaagggctaaaagactttgttggcctaaagaatgtggcatcgttcaggg
cctccctcagtgatacagtcaggctctggaaatctttagaacagacgaaagactacgaac
tgctgagagcatcaacagagaaatttgttcttgatccctttaaggcaaagacaatgaagg
acatcagtgacctttcagaccttgtagagatgcaggagaagatgatcaattgtgtgcaag
atgcatctggttgcagcagctatgaaattcctgccatcaaaaaactcaggaaactagagt
ttgcgctgggtccagtatgtggccttcagggattcctaaaacttgtggaaattcttgcag
catttccatcacttcagcatttagagtaa
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