Phaethon lepturus (White-tailed tropicbird): 104626880
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Entry
104626880 CDS
T08325
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
Pathway
plet03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
plet00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104626880 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plet03021
]
104626880 (PCF11)
03019 Messenger RNA biogenesis [BR:
plet03019
]
104626880 (PCF11)
Transcription machinery [BR:
plet03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104626880 (PCF11)
Messenger RNA biogenesis [BR:
plet03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104626880 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
CID
SHOCT
DUF6980
Motif
Other DBs
NCBI-GeneID:
104626880
NCBI-ProteinID:
XP_010293210
LinkDB
All DBs
Position
Unknown
AA seq
1635 aa
AA seq
DB search
MYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDDIFPLKKLYA
LDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTAPTSAVTSGASTPPAVPEI
QKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQGSSTIASVPAPS
KQHMSPTPHMTVKPPHQTAVQSEKNKPSPSPPLHDIKIVNRDPRLNRMAQHSSHAKDQSH
RKEFSPNTTSQSDTKANKTTQAEKQNSTKQEKLKASEKTQKKEIDQSEAKSKSPSPLKNK
LPNTKDNKTQECESTKVSEISKRDPRLKRHLQDKSEGKEEEVKEKRRSTEKKEEHKTCEH
RPVGSRNKVINGAVQKQDTTTEESEKQGGKQGRSSSRKRSRSRSPKARSPSTHSPKRRER
RSPKRRLRSLSPTSSTPKIGKIRPIGPKQSHAEEGTQAARDERNSNKRNVKQEVRDPRRV
KKAQEDRPQETASQHSTKASPDPKENAENWQGSKSGKRWKSGWEENKNSQQNEEHQALGK
SPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKRELLKKANERLTSGE
ITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLSDAELTYYEHKAKLK
RTQVQHSLSRLDLLDPDDILDYHLPDSLLSGIECEQAKAKRGVQFDRKEPFGERSRRHSP
VSGTKRPFADNLSPLESRRRLEEQNATKGARGSKNFDPYDSWGESDEFRDALRQQGKSTT
EFQKLDGDAVCRFDNREERQLLGQAGVREEQRSPFSERFKRTRYEDPEKAPFPETPVSRF
GGIEAKQRITALMEDRPLFDGSPRPAAARVGVDGQGSPFVDGPAAGSSSRIDGPPGQAAM
RFEGPLVGAGASQFDGPLAGAGGAGALRFDGPPGQLAGALRFEGPPGQVGGGGPLRFEGP
LGQIGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQPSGGLRFEGPHGQPMGPRGQPG
GGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFEGPHGQPMGPHGPSG
GGLRFDGPHGPSGGGLRLEGPHGQPGVGPRLIDGPVHQGAGGLRFDGPLGRAGPRFDGCH
AAGFDGQPGQLSLLQRFDGIHGQPGPRFERAPGQQAQPRFDTAIPQRFDGPHQPASRFDL
PLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPSHGMQFQRPDIFDGSPGP
NFSGPAGPGAQNFPLRAAGHYFDEKNLQGPQYGNFNNMPMGGNQVSLMSGQPGPYGQGQQ
YLPNPGSFVQNPAGAVPHSYPDNHLGQLDVNELFAKLLSTGILKLSKTDSTSAQANETSA
QPAAEEEDDDQNEDQNVPDLTNFTVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQTDVY
ADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHEEVVL
KTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPSC
YEDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKQETQESCDSPKVKEEPDDTPTACAEES
TPASTDIKTEPDESV
NT seq
4908 nt
NT seq
+upstream
nt +downstream
nt
atgtaccttatggattccattgtcaagaatgtgggaagagaatatcttactgcatttact
aaaaacctagttgcaacatttatttgtgtatttgaaaaggtggatgaaaatactaggaaa
agtttatttaaattacgctccacatgggatgatatttttcctttgaagaaactatatgca
cttgatgtcagagtcaactcattagatcctgcttggccaattaaacctctgcccccaaat
gtgaatacttctagcatccatgtgaatcctaagtttttaaataaatcgccagaggaatct
actgcacctacctctgctgtcacttctggtgcctctactcctccagctgttcctgaaata
caaaagaatttgacacaggagcaactgataaggcagcagttgcttgcaaagcaaaagcag
ttgttagaacttcagcagaaaaaattagagctggagctggaacagactaaagcacagttg
gctgtatctcttagtgttcagcaaggatcatctactatagcttcagttccagcaccttcc
aagcaacacatgtctcccacacctcatatgacagttaaaccacctcatcagactgctgtg
caatccgaaaaaaacaaaccatccccaagtcctcctcttcatgatatcaaaatagtgaat
agggatcctcgacttaataggatggctcaacattcttctcatgctaaagatcaatctcat
aggaaagaattttcaccaaacacgaccagtcagtctgataccaaggcaaacaaaaccaca
caggctgaaaaacaaaactcaacaaagcaagaaaaattgaaagcaagtgaaaaaacgcag
aagaaggaaattgaccagtcagaagcaaaatctaaatcgccatcccctttaaaaaataag
ctacccaatactaaagataataaaacccaggaatgtgaaagcacaaaagtatctgaaatt
agcaagcgggatccaagactgaaaagacatcttcaagataagtcagagggcaaagaggag
gaggtgaaagagaagaggagaagtacagagaaaaaagaggaacataagacgtgtgaacat
agaccagtaggcagcagaaataaagtaattaatggtgctgttcagaaacaagacacaact
acagaggagtcagaaaaacagggtggaaaacaggggagatcaagtagtagaaaacggtca
cgatcacgctctcctaaggcacggtcgccatctacacattctccaaaaagacgagagagg
agatcacccaaaagaagacttaggagtttatctcccacttcatcaactcctaaaattgga
aaaatacgcccaataggtcctaagcagtctcatgctgaagaaggcacacaagcagcaaga
gatgaaagaaattctaataagaggaatgttaaacaagaggtgcgagatccgaggagagtg
aaaaaagcccaagaagacaggccccaagaaacagcaagccagcattctacaaaagcttct
cctgatccaaaggagaatgcagaaaactggcagggatccaaatcaggcaagaggtggaaa
tctggttgggaagaaaataaaaactcccagcagaacgaagaacaccaagcacttggtaaa
tcccctcaccaaagacaccgggagaactggcctgctggtaaaggaattttatcaccccga
gcaccaaagcagcagcaccggttaagtgtggatgctaatttacagattcccaaagaattg
acatctgcaagcaagagagaattacttaagaaggccaatgaacgtttaacatctggtgaa
ataacacaagatgagttcctcatggtagctcatcagatccgacagctgttccaatatcag
gaaggaaagcacagatgtaatgtctgggatagccctacagaggaaaaatgtggcttgaaa
aagaagcctcttctgtcagatgcggaattgacctattatgaacataaggctaaactaaaa
agaacacaagttcagcattcattgtcaaggcttgatctgttggatcccgatgatattttg
gattatcatttgcctgattcattgctttctggaatagaatgtgagcaagcaaaagccaag
cgtggagtacagtttgacagaaaagaaccatttggagaaagatcaaggagacactctcct
gtaagtggcactaagagaccttttgccgataacctctcaccacttgagagtcgaagaagg
cttgaggaacaaaatgctactaaaggagcaagaggttctaagaactttgatccttatgac
agctggggagaatcagatgaatttagagatgctcttagacaacaggggaaaagcacaaca
gaattccagaaactagatggtgatgcagtctgcagatttgataatcgtgaagaaagacag
cttcttgggcaagctggtgttcgagaggaacaaagatcaccattcagtgaacgtttcaaa
agaactaggtatgaagatccagagaaagcaccatttccagaaactccagtatcaagattt
ggaggcattgaagcaaagcagaggataactgcactaatggaagatagacctctatttgat
ggctcacctagaccggctgctgcaagggttggggtagatggacaaggaagtccttttgtt
gatggtcctgctgctggttcaagttccagaattgatgggccacctggacaggctgctatg
agatttgaggggcctttggtgggggcaggggcatctcagtttgatggaccgctggcagga
gcagggggagctggagccctaagatttgatggtccaccagggcagctggcaggggccctg
aggtttgaagggcccccaggacaggttggtggcgggggtccactgaggtttgagggacct
cttgggcagataggtgggcctttgcggttcgaggggcctgcagggcagcctgtaggtggt
cctagatttgaaggacctggagttggtctcaggtttgagggtccccgtggtcagccttca
ggtggtctcaggtttgagggacctcatggtcaacctatggggcctcgaggtcaaccaggg
ggtggtctcaggtttgagggaccccatggtcaacccttggggcctcatggtcaaccaggg
ggtggcctcaggtttgaagggccacatttacagccattggggccccatggtcaacctgga
ggtggcctcagatttgagggaccacatggtcagcctatggggccccatggaccatcaggt
ggtgggctcagatttgatgggccacatggaccatcaggtggtgggctcagattggaaggg
ccacatggccagccaggtgtaggtcctaggttgattgatggaccagtacaccagggagct
ggtggacttagatttgatggtcctctgggtcgagctggtccaagatttgatggttgtcat
gcagctggatttgatggtcagcctggacagctgtctctcttgcaaagatttgatggaatt
catggacagcctggtccaagatttgaaagggcgcctggccaacaggcacaaccacgattt
gatacagccatacctcaaagatttgatggacctcaccagccagcctctagatttgacttg
ccccttggccttcaaggtgcacgtttcgaaaatgtagctaaccatcctgcctcaagacta
gaaatgtcaccatatggacaaggtggtccatttgtcgaacatcctggccagggttacaat
ggaccatcgcatgggatgcagttccagaggcctgatatatttgatggttcacctggacca
aatttcagtgggccagctggcccaggagcacagaatttcccattgagagcagccggacat
tactttgatgaaaaaaatcttcagggtcctcaatatgggaacttcaataatatgccaatg
ggaggtaatcaggtttctctcatgtctggtcaaccagggccttatggccaaggtcaacag
tatttgccaaatcctggaagttttgttcagaaccctgcaggagctgttccacattcatat
cctgataaccatcttggacagcttgatgtcaatgaactgtttgctaaactgctgtcaaca
gggatcctcaaactgtcaaaaactgattccacttcagcacaagcgaatgaaacatcagcc
cagccagctgctgaagaggaagatgatgaccagaatgaagatcaaaatgttccagacctc
actaacttcacagttgaagaacttagacagcgctacgatagtgttataaatcgactgtac
actggaattcagtgttactcatgtggaatgagattcactacttcacagacagatgtttat
gcggatcatttagattggcattatcgtcagaaccggacagaaaaagatgttagcagaaaa
attacacacagaagatggtactacagtttaacagactggattgaatttgaagaaatagca
gatctagaagagcgtgcaaaaagccagttttttgaaaaagctcatgaagaggttgtgttg
aagacacaagaagctgcgaaagagaaggagtttcagagtgtccctgctggaccagctgga
gcagttgagagctgtgaaatttgccaagagcaatttgagcagtactgggatgaggaagag
gaagagtggcacctgaagaatgctatcagagtagatgaaaagatttaccatccatcttgc
tatgaagattaccaaaatacatcatcatttgattgcacaccatctcccagcaagactcct
gtagaaaatccactaaatataatgttgaacattgttaaacaagaaacacaagagtcctgt
gactcacctaaagtcaaagaagaacctgatgacacccctactgcctgtgcagaagagagc
acacctgcatctacagatattaaaacagaacctgatgagtctgtttaa
DBGET
integrated database retrieval system
