Phaethon lepturus (White-tailed tropicbird): 104628459
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Entry
104628459 CDS
T08325
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
Pathway
plet03015
mRNA surveillance pathway
plet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plet00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104628459 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
104628459 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plet03019
]
104628459 (PABPC4)
03041 Spliceosome [BR:
plet03041
]
104628459 (PABPC4)
Messenger RNA biogenesis [BR:
plet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104628459 (PABPC4)
mRNA cycle factors
Stress granule specific factors
104628459 (PABPC4)
Spliceosome [BR:
plet03041
]
Complex C
Other components
Complex C specific factors
104628459 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
Motif
Other DBs
NCBI-GeneID:
104628459
NCBI-ProteinID:
XP_010295341
LinkDB
All DBs
Position
Unknown
AA seq
630 aa
AA seq
DB search
MNTAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEK
HEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRP
TYYAPSQMTQMRPNPRWQQGGRPQGFQGMPNAMRQSGPRPALRHLAPAGNAPASRGLPAA
AQRVGVGTAAQNLAPRPPVAAPAPRAVPPYKYASSVRSPHPAVQPLQAPQPAVHVQGQEP
LTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLR
SKVEEAVAVLQAHQAKKEAAQKVGVVAATS
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagctgccagcagttacccgatggcatcactgtacgtgggtgacctgcacccc
gatgtcaccgaggccatgctctacgagaagttcagccctgctgggcccgtgctctcgatt
cgggtctgcagggatatgatcacccgccggtccctcggatatgcgtatgtcaacttccag
cagccagcagatgcggagcgtgctctagataccatgaattttgatgtgatcaaaggaaaa
cccattcgcatcatgtggtctcagagggatccctccttgaggaagtcaggggttgggaat
gtcttcattaagaacctggacaaatccattgataacaaggcactttatgacacattctca
gcgtttgggaatattttgtcctgcaaggtggtgtgtgatgagaatggctctaagggctac
gcatttgtgcattttgagacccaggatgctgcagatagagccattgagaagatgaacggc
atgctgctaaacgaccgcaaagtatttgttgggagattcaagtctcgaaaagagcgggag
gctgagttgggagccaaggcaaaggaattcaccaatgtttatattaaaaactttggggat
gacatggatgatgaaaggctaaaggagctcttcagcaaatatggtaaaactctaagtgtt
aaagtgatgacagaccccactggaaaatccaagggctttggctttgtaagctttgaaaag
catgaagatgctaacaaggcagtagaagaaatgaatgggaaggatatcaatgggaaaatg
gtatttgtaggccgcgcacagaagaaggtcgagcgccaggcagagctgaaacggaagttt
gaacagctaaaacaagagagactcagccggtaccagggtgttaacctatacattaaaaac
ctagatgacactatagatgatgaaaaactgaggaaggagttctcaccttttgggtcaata
acgagtgccaaggtgatgctggaagatggacggagcaaagggtttggctttgtctgcttt
tcctctccagaggaagctacaaaagctgtgacagagatgaatggacgaattgtgggctca
aagccgttgtacgttgcacttgcacaaaggaaagaagagcgaaaggcccatctaactaat
cagtacatgcagcgcattgctgggatgagagccttgcctgccaacacaatcattaatcag
ttccagcctgctgctgggggctatttcatgcctgctgttccccaggctcagagcagaccc
acttactatgcacccagtcaaatgacacagatgagacccaacccacgctggcagcaagga
ggaagacctcaaggcttccagggaatgccaaatgccatgcgccagtctggaccacggcca
gcactgcgccatctggcccctgccggcaatgctccggcctctcgtggcctccctgccgct
gcccagcgagttggtgttggcaccgcagcgcagaacttagcacctcgtccgcctgtagct
gcccctgctcccagagcagttcctccttataaatacgcctcaagtgtccgcagcccacac
ccagctgtacagcctttgcaggcacctcagcctgcagtacatgtgcagggacaggaaccg
ctaacggcctccatgctggctgctgctcctccccaggagcagaaacaaatgctgggagaa
cgtttgttccctctgattcaagctatgcaccccagtcttgcggggaagatcacaggaatg
ctgctagagattgacaattcagagctgctgcacatgctcgagtctccagagtccctccgg
tcaaaggtggaggaggccgttgcagtgttgcaggctcaccaagccaagaaagaagctgcc
cagaaggtgggcgtggttgctgctacctcttaa
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