Phaethon lepturus (White-tailed tropicbird): 104628516
Help
Entry
104628516 CDS
T08325
Name
(RefSeq) LOW QUALITY PROTEIN: protein patched homolog 1-like
KO
K06225
patched 1
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
Pathway
plet04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
plet00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
104628516
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sterol-sensing
Patched
Motif
Other DBs
NCBI-GeneID:
104628516
NCBI-ProteinID:
XP_010295438
LinkDB
All DBs
Position
Unknown
AA seq
1298 aa
AA seq
DB search
MFNPQLMIQTPQEDGANVLTTEALRQHLDSALQASRVHVYMYNRQWKLEHLCYKSGELIT
EAGYMDQIIEYLYPCLIITPLDCFWEGAKLQSGTAYLLGKPPLQWINFDPLEFLEELKKI
NYQVESWEEMLNKAEVGHGYMDRPCLNPADPDCPITAPNKNSTKPLDVALVLSGGCYGLS
RKYMHWQEELIIGGTVKNSSGKLVSAQALQTMFQLMTPKQMYEHFKGYEYVSHINWNEDK
AAAILEAWQRMYVEVVHQSVAQNSTQKVLSFTTTTLDDILKSFSDVSVIRVASGYLLMLA
YACLTMLRWDCAKSQGAVGLAGACWVPSPWLALLVALSVAAGLGLCSLIGISFNAATTQV
LPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAFFMA
ALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCFTSPCVTRV
IQIEPQAYVESDNTCYSPPPPYSSHSFAHETQITMQSTVQLRTEYDPHTQVYYTTAEPRS
EISVQPVTVTQDNLSCQSPESTSSTRDLLSQFSDSSMHCLEPPCTKWTLSSFAEKHYAPF
LLKPKAKIVVIFLFLGLLGLSLYGTTRVRDGLDLTDIVPRETREYDFIAAQFKYFSFYNM
YIVTQKADYPNVQHLLYELHRSFSNVTYVLLEEDRQLPKMWLHYFRDWLQGLQDAFDSDW
ETGRITYNNYKNGSDDAVLAYKLLVQTGNRAKPIDISQLTKQRLVDADGIINPNAFYIYL
TAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRTAEPIEYAQFPFYLNGLRETS
DFVEAIEKVRAICSNYTSLGIASYPNGYPFLFWEQYIGLRHWLLLSISVVLACTFLVCAL
FLLNPWTAGIIVVVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFL
TAIGDRNHRAVLALEHMFAPVLDGAVSTLLGVLMLAGSEFDFIVRYFFAVLAILTILGVL
NGLVLLPVLLSFFGPYPEVSPANGRNRLPTPSPEPPPSIVRFALPPGHTNNGSDSSDSEY
SSQTTVSGISEELHQYEATQGPGAPVRQVIVEATENPVFARSTVVQPETRHQSSPRLQLS
PESSTQQAWRQARQPKREAREGLRPPPYRPRRDAFEISTEGHSGPSNRDRLGHRARSHNM
RSPAFGAVGATGPAYCQPITTVTASASVTVAVHPAVHSHSSRGGSFPSYEGYHEADHGPF
EDPHVPFNVWCERRNSKVEVIELQDVECEERIPGNSSQ
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacccccagctcatgatccagactccacaggaagatggtgctaatgtactaaca
acagaagcactccgacagcaccttgactctgcgcttcaggccagcagagtacatgtctat
atgtataacagacagtggaaattggaacatttgtgttataaatcaggagaactcatcaca
gaagcaggttacatggaccagatcatagaatatctttatccttgcttaattatcactcct
ttggactgcttctgggagggagcaaagctacagtcaggaactgcctatctgttagggaag
cctcctttgcagtggatcaactttgaccccttagaattcttggaagagttaaagaaaata
aactaccaagtggagagctgggaagaaatgctgaataaagcggaggttggtcatggttat
atggatcgaccctgcctgaatcctgctgatcccgattgcccaatcacagctcccaataaa
aattccaccaaacctcttgatgtagcccttgttttgagtggtggatgctatggactgtca
agaaaatacatgcattggcaagaggagttgattataggtggtacagtcaagaacagttct
ggtaaacttgtcagtgcccaggctttgcaaaccatgtttcagttaatgacccctaagcaa
atgtatgagcacttcaaggggtatgaatatgtttcacatatcaactggaatgaggataag
gcagcagcaattttggaagcctggcagaggatgtatgttgaggttgttcatcaaagtgtt
gcacaaaactctactcagaaggtgctctcctttaccacgactaccctggatgacatccta
aagtcattttctgatgtcagtgttatcagagtagctagtggctacttactaatgcttgcc
tacgcctgtttaacaatgctgcggtgggactgtgccaagtctcagggtgccgtggggcta
gcaggcgcttgttgggtgccctctccgtggctggccttgttggttgcactctcagtggct
gcaggattgggcctgtgctcattgattggaatttcctttaatgctgccacaactcaggtt
ttgccttttcttgctcttggagttggtgtagatgatgttttccttctggcacatgcattt
agtgaaacagggcagaataagagaatcccattcgaggacagaacaggtgaatgtttgaag
cgaacaggagcaagtgtagcccttacatctatcagcaatgttactgctttctttatggct
gccttaatccctattcctgctttacgagcattttcacttcaagcagccgttgtggtggta
ttcaactttgctatggttctgctgatttttcctgctatcctgagcatggacctttatcgt
cgggaagacaggagactggatatattctgctgttttacaagtccgtgtgtcactagagtg
attcagattgagcctcaagcatatgtggaaagtgacaatacttgctacagtcctccaccc
ccgtacagcagtcacagttttgcacatgaaactcagattacaatgcagtctacagtgcag
ttgcgcacagaatacgatcctcatacgcaggtgtactacaccacagcagagcctcgctca
gagatatctgtgcagccagtgacagtgacacaagataatcttagctgccagagcccagaa
agcacaagctcgacgagggatttgctttcccaattctcagactccagtatgcattgcctt
gagccaccctgtacgaagtggaccctttcatcttttgcagaaaagcattatgctccattc
ctcctgaagccaaaagctaagattgtggttatttttctttttctgggtttacttgggctc
agcctttatggaactacccgagtgagagatggactagatctcacagacattgtaccacgg
gaaacacgggaatatgactttattgccgcacagttcaagtacttttctttctacaacatg
tatattgtgacacagaaagcagactatccaaatgtccagcacttactttatgaacttcac
agaagtttcagcaatgtgacatacgttttgttggaagaggataggcagcttccgaaaatg
tggttgcactactttcgagactggctgcaaggacttcaggatgcatttgacagcgactgg
gaaactgggaggatcacttacaacaattataaaaatggatctgatgatgctgttttggct
tacaaactcttggtacaaacaggcaaccgagcaaagcctattgacatcagccagttgact
aaacagcgtctggtggatgcggatggaatcattaacccaaatgctttctacatctacctg
acagcctgggttagcaatgaccctgtggcctatgctgcctcgcaagccaacatccggcct
caccgcccagagtgggtccacgacaaagcagactatatgccagaaacaaggctgagaaca
gctgagcccatagaatatgctcagtttcctttctacctcaatggattgcgtgaaacttct
gactttgtggaggctatcgagaaagtgagagctatctgtagtaactacaccagcctgggg
atcgccagctacccaaatggttacccatttctgttttgggagcagtacattggtcttcgt
cactggctcctcttatccattagcgtagttttggcttgcacgtttctggtgtgtgccctc
ttcctcctaaacccctggacggctgggatcattgtggtggtgctggctctgatgactgtg
gagctgtttggcatgatgggtctaattggaataaaactgagtgcagtgcctgtggtcatc
cttattgcttctgttggcattggtgtggaattcactgttcacgttgcattggcatttttg
actgccataggagacaggaaccatagggctgtccttgcattggaacacatgtttgcacca
gtgctggatggggccgtgtccactctgcttggagtgctaatgctcgcaggatcagagttt
gattttattgtcaggtatttctttgctgttttggcaatcttaaccattctgggagttctc
aatggattggtgctccttcctgttcttctttcattctttggaccataccctgaggtttct
ccagccaatggacgaaacagattgcccacgccatctcctgagccaccccctagcatcgtg
aggtttgcattgccacccgggcacacaaataatgggtcagattcctctgattcagagtac
agctctcaaaccacagtgtctggcatcagtgaagagcttcatcagtatgaggctacccaa
ggccctggggcaccagtccgtcaagtaatagtggaagccactgagaatcctgtctttgca
agatccactgtggttcagccagagacaaggcatcagtcgagtcccagattacaactgagt
ccagagtccagcacgcagcaggcatggcgtcaggccaggcaacccaaacgggaagcgagg
gaagggctgcgaccacctccttaccgccctcgcagggacgcttttgaaatttctactgaa
gggcattcaggacctagcaatagggatcgcttgggccacagggctcgttctcataacatg
agaagcccagcgttcggcgccgtgggcgccacgggaccagcgtactgccagcctataact
actgtgactgcctcagcttcagtgactgttgctgtccaccctgcagtgcacagccacagc
tctcggggagggagctttccatcctacgagggataccatgaagctgaccatgggccattt
gaggacccccatgtgccttttaatgtgtggtgtgaaagaagaaattctaaagtagaagtt
atagaactgcaagatgttgaatgtgaggaaaggatacctggcaacagctcacagtaa
DBGET
integrated database retrieval system
