Peromyscus leucopus (white-footed mouse): 114681040
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Entry
114681040 CDS
T07241
Symbol
Edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114681040 (Edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pleu03019
]
114681040 (Edc4)
Messenger RNA biogenesis [BR:
pleu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114681040 (Edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
114681040 (Edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
WD40_Prp19
DUF445
WD40_CDC20-Fz
Beta-prop_HPS5
WDR55
Motif
Other DBs
NCBI-GeneID:
114681040
NCBI-ProteinID:
XP_028710096
LinkDB
All DBs
Position
5:107668017..107681299
Genome browser
AA seq
1405 aa
AA seq
DB search
MASCASIDIEDATQHLRDILKLDRPAGGSSAENQRPSSAYNGDLNGLLVPDPLSSGDSNS
TSKPGIRTMPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVA
DLAFAHLNSPQLACLDEAGNLFVWRLALVKGKIQEEILVHIRQPEGTPLNHFRRIIWCPF
IPEESEDCCEESSPTVALLHEDRAEVWDLDALRSSHSTWPVDVSQIKQGFIVVKGHSTCL
SEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQ
DPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQDEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA
EEENDSLGAESSHGASATESTAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPAHTA
HEDFTFGESRPELGSEGLASAAHGSQPDLRRIVELPAPADFLSLSSETKPKLMTPDAFMT
PTASLQQISASPSSSSSSSSSSSSSSSSSSSLTAVSAVSSSSTMDPSLTSRPPEELTLSP
KLQLDGSLTINSSSSLQASPRSLLPGLLPGPADKLTPKGAGQVSTAASALSLDLQEVEPL
GLPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSVPEGLIEPDSMASAASAL
HLLSPRPRQGPELGSQLGLDGGPGDGDRHSTPSLLEAALTQEVAAPDSQVWPTAPDITRE
TCSTLAESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDTSAEQSDHDDEVASLASAAGGFG
SKMPTPRLPAKDWKTKGSPRTSPKLKRKSKKDDGDSAVGSRLTEHQVAEPPEDWPALIWQ
QQRELAELWHNQEELLQRLCAQLEGLQNTVTDHVERALETRHEQEQRRLERALAEGQQRG
GQLQEQLTQQLSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSNSVASKLTV
VEGSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQ
INDSFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVNTLQSATEQMAATVSSSV
RAEVQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQATVTSSIMQAMRSAAGTPVPS
AHLDCQAQQAHILQLLQQGHLNQAFQQALTAADLSLVLYVCETVDPAQVFGQPPCPLSQP
VLLSLIQQLASDLGTRSDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAD
PHNSLGKAARRLSLMLHGLATPSLP
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgcgcaagcatcgatatagaggacgccacgcagcatctgcgggacatcctc
aagctggaccggcccgcgggaggttccagtgcagagaaccaaaggccatccagtgcttat
aatggagacctcaatgggctcctggttccggacccactcagctcaggtgatagtaactca
acaagcaaacctggtatacggaccatgccacctattaatctgcaggaaaagcaggtcatt
tgcctgtctggagatgacagctccacttgcattgggattttggccaaagaggtagaaatc
gtggccagcagtgattccagcatttccagcaaggcacgggggagcaacaaggtgaaaatc
cagcctgtcgccaagtacgactgggagcagaagtactactatggcaacctgattgcagtg
tctaattccttcttggcgtatgccattagggctgccaacaatggctcggcaatggtgcgt
gtgatcagtgttagtacttcagagcggaccctgctcaagggtttcacaggcagtgtggct
gatctggccttcgcacacctcaactctccacagcttgcctgcctagatgaggctggcaat
ctctttgtgtggcgcttggctctggttaagggtaaaattcaagaagagattttagtccat
atccggcagccagagggcacgccactgaaccacttccgaaggatcatctggtgccccttc
atccctgaggaaagtgaggactgttgtgaggaaagtagcccaacagtggccctgctgcat
gaagaccgggctgaggtatgggacctggatgcgcttcgctccagccacagcacctggccc
gtggacgtcagccaaatcaagcagggcttcattgtggtgaaaggccatagcacgtgccta
agtgaaggagccctttctcctgatgggactgtcctggctactgcaagccacgacggcttt
gtcaagttctggcagatctacattgaaggtcaggatgaaccaaggtgtctgcatgaatgg
aagcctcatgacggacggcccctttcttgcctcttattctgtgataaccataagaaacag
gatcctgaggtcccgttctggaggttcctcattactggcgctgaccagaatcgggagctg
aagatgtggtgcacagtgtcctggacctgcctgcaaaccattcgtttctccccagatatc
ttcagttcagtgagtgtacctcccagcctcaaagtttgcttggacctctcagcagagtat
ctgattcttagtgacgtgcaacgaaaggtcctctatgtgatggagctgctccagaaccaa
gacgagggccgcgcttgctttagctccatctccgagttcctgctcacccaccccgtgctc
agctttggcatccaggttgtgagtcgctgccggctgcggcacactgaggtgctgcccgcc
gaggaggagaacgacagtctgggtgctgagagttcccacggagccagtgccacggaatct
acagcgggggtgcttatcaagctcttttgtgtgcatactaaggcactacaagatgtgcag
atccgcttccagccacagctgaaccctgatgtggtggctccgctccctgcccacactgct
cacgaggacttcacatttggagagtctcgacctgaactaggctctgaggggctggcttca
gctgctcatgggtctcagcctgacctccggcgcatcgtggaacttcctgcacctgcagac
ttcctcagtctgagcagtgagaccaagcctaagttgatgacacccgatgctttcatgacg
cccaccgcctccctgcagcagatctctgcatcccctagcagtagcagcagcagcagcagc
agcagcagtagcagcagcagcagcagcagctccctaaccgctgtgtctgctgtgagcagc
tcctcaaccatggacccctccttgaccagcaggccacccgaggagctgaccttgagtccc
aagctgcagctggatggcagtctgacaataaacagcagcagcagcctgcaggcaagccct
cgaagcctccttcctgggctgctcccaggcccagctgacaaattgactcccaagggagct
gggcaggtatctacagctgcctctgcactgtccttggatttgcaggaagtggagcctctg
gggctaccccaggcctctcctagtcgcacccgttcccctgatgtgatctcctcagcatcc
actgccctgtcccaggacatccctgaaatcgcctctgaggccctgtcccgtggctttggc
tcgtctgttcctgagggcctcattgagccagacagtatggcctccgctgcttcagcacta
cacttactgtctcctcggcccaggcaaggccctgagcttggctctcagcttggcctggat
ggaggccctggggatggggatcggcatagtaccccctccctactggaagcagccttgacc
caggaggttgcagcccctgacagtcaagtctggcctacagcacctgacattactcgagag
acgtgtagtaccttggcagaaagccccaggaatggcctccaggaaaagcacaaaagcctg
gccttccaccggccaccttaccacctactgcagcaacatgacagtcaggacactagtgct
gagcaaagtgaccatgatgatgaagttgccagccttgcttctgccgcagggggttttggc
agcaaaatgcctactccacggctccctgccaaggattggaagaccaaaggatcccctcgg
acttcacccaaactcaagaggaaaagcaagaaggatgatggggattcagctgtgggatcc
cggctcacagagcaccaggtggcagagccccctgaggactggccggcattaatttggcag
cagcaaagagagctggcagaactatggcacaaccaggaggagctgctacagcgtctctgt
gcccaacttgaaggtctacagaacactgtcactgaccacgtagagcgtgccctggagacc
cggcatgagcaagagcagcggcggctggaacgagcactggctgaggggcagcagcggggt
gggcagctgcaggagcagctgacgcagcagctgtcccaggccttgtcttcagctgtggct
gggcgcctggaacgcagtataagggatgaaatcaagaagacagttcctccatgtgtctcc
agaagtctggagcctgtggcgggtcagctaagcaactcagtggcctccaaacttacagtt
gtggaaggcagcatgaaagagaatatctctaagctactcaagtccaagaacttgacagat
gccattgcccgagcagctgcagacacattacagggaccaatgcaggctgcctaccgggaa
gccttccagagtgtggtactgccagcttttgagaagagttgccaggctatgttccagcaa
atcaatgacagctttaggctgggcacgcaggaatatttgcagcagctagagagtcacatg
aagagccggaaggcacgtgaacaggaagccagggagcctgtgctggcccagcttcggggc
ctggtcaacacactgcaaagtgccactgagcagatggcggccaccgtgtccagcagtgtt
cgggcagaggtgcaacaccagctgcatgtggctgtgggcagcttacaggagtccatttta
gcacaagtacaacgcatcgttaagggtgaagtaagtgtggcacttaaggagcagcaggcc
accgtcacttccagcatcatgcaggccatgcgttcagctgctggcacacctgtcccttct
gctcaccttgactgccaggcccaacaagcccatatcttgcagttactgcagcagggccac
ctcaatcaggccttccagcaggccctgacagccgccgatctcagcctggtgctgtatgtg
tgtgaaactgtggacccggcccaggtgtttgggcagccgccctgtccactctcccagcct
gtgctcctctccctaatccagcagctggcatctgaccttggaactagaagtgacctcaag
ctcagctatttggaagaggctgtgatgcacctggaccacagtgatcccatcactcgagac
cacatgggctctgtcatggcccaggtacgccagaagctcttccagttcctgcaggctgat
ccacacaactcacttggcaaagctgcccggcgtctcagcctaatgttacatggccttgcg
acccctagcctcccttag
DBGET
integrated database retrieval system
