Peromyscus leucopus (white-footed mouse): 114681109
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Entry
114681109 CDS
T07241
Symbol
Vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X2
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu04140
Autophagy - animal
pleu04142
Lysosome biogenesis
pleu04145
Phagocytosis
pleu04148
Efferocytosis
pleu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
114681109 (Vps39)
04142 Lysosome biogenesis
114681109 (Vps39)
04140 Autophagy - animal
114681109 (Vps39)
04148 Efferocytosis
114681109 (Vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
114681109 (Vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pleu04131
]
114681109 (Vps39)
Membrane trafficking [BR:
pleu04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
114681109 (Vps39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
LIF1_N
Beta-prop_RIG_2nd
DUF4145
Lgl_C
KCTD11_21_C
Motif
Other DBs
NCBI-GeneID:
114681109
NCBI-ProteinID:
XP_028710230
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Position
4:complement(96195717..96240057)
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AA seq
875 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLKHTETGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWMDIPVAME
HQPPYIIAVLPRYVEIRTLEPRLLVQSIELQRPRFITLGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPTLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLSFLIENFKGLAIPYLEHIIHVW
EETGSRFHNCLIQLYCEKVQSLMKDYLLSLPTGKNPVPAGEEMGELGEYRQKLLMFLEIS
SYYEPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTKMAKEYCHKHYDQNK
EGNRDVYLSLLRMYLSPPNIHCLGPIKLELLEPQANLQAALQVLELHYSKLDTTKAINLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNSADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgctttcgagccggttccgatcctggaaaagcttcccctgcaaatcgactgc
ctagctgcctgggaggaatggcttcttgttggaaccaaacaaggacatcttcttctctac
aggattcggaaggatgttggttgtaacaggtttgaggtaacactagagaagtccaataag
aacttttccaaaaagatccagcagatccatgtggtttcccagtttaagattctagtcagc
ttgttagaaaacaacatttatgtccatgacttgctgacatttcagcaaatcactacagtt
tcaaaggccaagggagcatcattgttcacctgtgacctcaagcacactgagaccggtgag
gaggtcctgcggatgtgtgtggctgtgaaaaagaagctgcagctgtacttctggaaggac
agggaattccatgaactgcagggggactttagtgtacctgatgtgcccaagtccatggca
tggtgtgaaaattctatctgtgttggcttcaagagagactactacctgatcagggtggat
ggaaaggggtccatcaaagagctcttcccaacaggaaagcagctggagcccttggttgcc
cctctggcagatggaaaagtagctgtgggtcaggatgacctcaccgtggtgctcaatgag
gaaggcgtctgcacacagaagtgtgccctgaactggatggacatcccagtggccatggag
caccagcctccatacatcattgcggtgttaccccgatacgtggagatccgaacactcgaa
ccaaggcttctggttcagagcattgagttgcaaagaccccgtttcattaccctaggagga
tcaaacattatctatgtggccagcaatcattttgtttggagacttattcctgtccccatg
gcaacccaaatccagcagctccttcaggacaagcagtttgaactggctctacagctcgca
gaaatgaaagatgactcagacagtgaaaagcagcagcaaatccatcacattaagaacttg
tatgccttcaacctcttctgccagaagcgctttgatgagtccatgcaggtctttgctaaa
cttggcacagatcccacccacgtgatgggcttgtaccctgacctgctgcccacagactac
aggaagcagctgcagtaccccaacccgctgcccacactctctggtgccgaactggagaag
gctcacttagctctcattgactacctgacgcagaaacgaagtcagttggtaaagaagctg
aatgactcggatcaccagtccagcacctccccactcatggaaggcactcccaccatcaag
tccaagaagaagttactacagatcatcgacaccaccctgctcaagtgctacctccataca
aacgtggccctggtggctcccttgctgcgcttggagaacaaccactgtcacatcgaggaa
agtgagcacgtgctgaagaaggctcacaagtacagtgaactgatcattctgtacgagaag
aaggggctccatgagaaagctctgcaggtactagtggaccagtccaagaaagcaaactca
cctctaaaaggccacgagaggacggtgcagtatctgcagcacttgggcacagaaaatcta
catttgattttttcctactcggtctgggtgctgagagacttcccagaagatggcctgaag
atattcaccgaagacctcccggaggtagagtctctgccacgagatcgagtactcagcttc
ttaatagagaatttcaagggtctggccattccttatctggagcatatcatccacgtgtgg
gaggagacaggctcacgattccacaactgcctgatccagctgtactgtgagaaagtgcag
agtctgatgaaagactaccttctgtccctgcccacaggtaaaaatcccgtccccgctgga
gaggaaatgggtgagctgggagaataccggcagaagctgctcatgttcttggagatttcc
agctactatgaaccaggccggctcatctgtgattttccctttgacggcctcttagaagaa
agagctctcctattgggacgcatggggaagcatgaacaggctctcttcatctacgtccac
gtcttgaaggacacaaagatggctaaggagtactgccacaaacactacgaccaaaacaaa
gaaggcaacagagatgtgtatctgtccctgcttcggatgtacctgtccccccccaacatt
cactgcctggggccgatcaagctggagctcctggagccacaggccaacctccaggctgcc
ctgcaggtccttgagctgcactacagcaaactggacaccaccaaggcgatcaaccttctg
ccagcaaacactcagatcaatgacatacgcatctttctagaaaaggttttagaagaaaat
gcacaaaagaaacggttcaatcaagtgctcaagaaccttctccatgctgagttcctgagg
gttcaggaagagcggattttacaccagcaggtgaagtgcatcatcactgaggagaaggtg
tgcatggtgtgcaagaagaagattgggaacagtgcatttgcaagatacccaaatggagtg
gttgtgcattacttctgttccaaagaggtaaactcggccgacacctga
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