Peromyscus leucopus (white-footed mouse): 114681407
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Entry
114681407 CDS
T07241
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114681407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pleu03019
]
114681407
03041 Spliceosome [BR:
pleu03041
]
114681407
Messenger RNA biogenesis [BR:
pleu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
114681407
Spliceosome [BR:
pleu03041
]
Complex B
Other components
Prp19-related factors
114681407
Complex C
114681407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
TPR_8
Suf
TPR_12
TPR_15
ARM_TT21_C
ARM_TT21
TPR_1
TPR_16
TPR_21
Motif
Other DBs
NCBI-GeneID:
114681407
NCBI-ProteinID:
XP_037057766
LinkDB
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Position
1:175664361..175666964
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AA seq
827 aa
AA seq
DB search
MRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVT
DPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRI
WPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDER
FVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIR
SGHFEKARDVYEEAVRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREEEDDVDLE
LRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRSREVINTYTEAVQTVDPF
KATGKPHTLWVAFAKFYEDNRQLDDARVILEKATKVNFKQVDDLASVWCQYGELELRHGN
YDEALKLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYD
RILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARY
GGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQ
YDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIY
SYCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKV
SGSATGTVSDLAPGQSGMDDMKLLEQRAEQLAAEAERDQPPRAQSKIFFVRSDASREELA
ELAQQANPEEIQLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgcggaaccagttctccgtcaaatgctggctccgctacatcgagttcaaacagggggcc
ccgaaaccccggctcaatcagttgtacgagcgggcgctcaagctgcttccctgcagctac
aaactctggtaccgctatctgaaggcacgccgggcacaggtgaagcatcgctgtgtgact
gatcctgcctatgaagacgtcaataactgccatgagagggcctttgtgttcatgcacaag
atgccacgtttgtggctagactactgccagttcctcatggaccagggacgagtcacacac
acccgccgcacctttgaccgtgctctccgggcactacccatcacacagcactctcgcatc
tggcccctgtatcttcgcttcctgcgctcccacccactgcctgagactgctgtgagaggc
taccgtcgcttcctcaagctcagtcctgagagtgccgaggagtacatcgagtacctcaaa
tccagtgaccggctggacgaggctgcacagcgcctggccaccgtggtcaatgatgaacgc
tttgtgtccaaggcgggcaagtccaactaccagctgtggcacgagctgtgcgaccttatc
tcccagaacccggacaaggtacagtccctcaacgtagatgccataatccgtggtgggctc
acccgcttcaccgaccagctgggcaagctgtggtgctccctggctgactactacatccgc
agtggccacttcgagaaggctcgggacgtgtatgaggaggctgtccgcaccgtgatgact
gtgcgagacttcacccaggtgttcgacagctatgcccagtttgaggagagcatgatcgcg
gcaaagatggagactgcctctgaactggggcgcgaggaggaggatgatgtggacctggag
ttgcgcctggcccgcttcgagcagctcattagccggcggcccctactcctgaacagcgtc
ctgctgcgccagaatccgcaccatgtccacgagtggcacaagcgtgtggccctgcatcag
ggccgctcccgggaggttatcaacacgtacacagaggctgtgcagacagtggaccccttc
aaggccacaggcaagccccacacactgtgggttgcatttgccaagttttatgaagataac
agacagctggatgatgcccgtgtcatcctagagaaggccaccaaggtgaactttaagcaa
gtggatgacctggcaagcgtgtggtgccagtatggggagttggagctccggcatgggaat
tatgatgaggccttgaagctgttgcggaaagccacagcgctgcctgcgcgccgggctgag
tactttgatggttcggagccggtgcagaaccgtgtatacaagtcactgaaggtgtggtcc
atgcttgccgacttggaggaaagtctgggcaccttccagtcaaccaaggccgtgtatgac
cggatcctggacctgcgcatagccacaccgcagatcgtcatcaactacgccatgttcctg
gaggagcacaagtacttcgaggagagcttcaaggcatatgagcgtggcatctcactgttc
aagtggcccaacgtgtcagacatctggagcacctacctgaccaaattcattgcccgctat
gggggccgcaagctggagcgcgcacgggacctcttcgagcaggcactagacggctgccca
cccaaatatgccaagaccctgtacctgctttacgcacagctggaggaggagtggggcctt
gcccgtcacgctatggctgtgtacgaccgcgctacccgggcagtggagccagcccagcag
tatgatatgttcaacatctacatcaagcgggctgctgagatctatggcgtcacccacact
cgtggcatctaccagaaggccattgaggtgctgtctgatgagcacgcccgtgagatgtgc
ctgcggtttgcagacatggagtgcaagcttggtgaaatcgaccgagcccgcgctatctac
agctactgctcccagatctgtgatcccaggaccactggggcattctggcaaacatggaag
gactttgaggttcggcacggcaatgaggacaccatcagggagatgctgaggatacgtcgg
agtgtgcaggccacatacaatactcaggtcaacttcatggcttcgcagatgctcaaggtg
tcaggcagtgccacaggcaccgtgtctgacctggctcctgggcagagcggcatggatgac
atgaagttgctggagcagcgggcagagcagctcgcagctgaggctgagcgggaccagcct
ccaagggcccagagcaagatcttctttgtgaggagcgatgcatccagggaggagctggca
gagctagctcagcaggccaaccccgaggagatccagctgggcgaggacgaggatgaggat
gagatggacctggagcccaatgaagtccgactggagcagcagagcgtgccagctgctgtg
ttcgggagcctaaaggaagactga
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