Peromyscus leucopus (white-footed mouse): 114682764
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Entry
114682764 CDS
T07241
Symbol
Col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X2
KO
K24356
collagen type XXV alpha
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
114682764 (Col25a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pleu00536
]
114682764 (Col25a1)
Glycosaminoglycan binding proteins [BR:
pleu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114682764 (Col25a1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
114682764
NCBI-ProteinID:
XP_028712596
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All DBs
Position
6:102902845..103306882
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AA seq
693 aa
AA seq
DB search
MLVKKLAGKGGGREPGSEDPRPLGQRCAGSMASCAALATLLSVVAVVFCLYLGVKTNDLQ
ARIAALESAKGTPSFRPLPDTLDELKAMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
PAGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
PPGQKGSIGAPGTPGTNGQKGEPGSPGAAGQSGLPGPKGEPGKEGEKGDAGENGPKGDAG
EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
KGERGEAGPPGRGERGDPGAPGPKGKQGESGARGPKGSKGDHGDKGDSGALGPRGPPGQK
GDPGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGVDGEQGL
KGSKGDVGDPGMPGEKGGIGLPGLPGANGVKGEKGDSGLPGPQGPSIIGPPGPPGPHGPP
GPMGPHGLPGPKGEPGLNGVKGLKGEPGQKGDRGPLGLPGASGLDGKPGSRGADGPIGPH
GPAGPKGERGEKGAVGEPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDLGEKGEKGFRGVK
GEKGEPGQPGLDGLDAPCQLGPDGLPMPGCWQK
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgttggtgaagaagcttgcagggaaaggagggggacgagagcctggatcagaagatccg
cgccccttgggacagcgttgtgccggctccatggcctcgtgtgcggccctggcgaccctc
ctgtcagtggtggctgtggttttttgcttgtatcttggggtgaaaaccaacgacctccag
gcgaggattgctgctcttgaatctgccaaaggaaccccttcctttcgcccgctgcctgac
accctcgatgagctgaaggctatggttcaggagaaagtggagcgtctcttggcacagaaa
tcctatgaacatatggctaaaataagaatcgcaagagaggcaccttcagagtgcaactgc
ccggcaggtcctccggggaaacgaggaaagaggggccgaagaggagagtctggtcctcct
ggtcaacctggtccccagggcccccctggtccaaaaggtgataagggagaacaaggtgat
caggggcctcggatggtgtttcctaaaatcaatcatggctttctctctgctgatcagcag
ctcattaaacgccggctgattaagggtgaccaaggacaggcagggcctccaggaccccca
ggccctcctggtccaagaggcccacctggggacacagggaaagacggaccccgaggaatg
ccaggagtacccggtgaaccagggaaaccaggagaacaaggcttgatgggacctctgggg
cctccaggacaaaagggttccatcggagcacctgggaccccaggcacgaatgggcaaaag
ggtgagcctggatcacctggagcagcagggcaaagtggactcccgggaccaaagggggag
cctggaaaagaaggagaaaagggagatgctggagaaaatggccccaaaggtgacgcaggt
gaaaagggtgaccctggatcatctgctgcaggaattaagggagaacctggagaatctggt
cgtccaggacaaaagggtgagccagggctgcctggactgcctggactcccggggatcaag
ggagaaccaggcttcattggtcctcaaggagagcccggcttaccagggttaccaggaaca
aaaggtgaacgtggagaagcagggcctcctgggagaggtgaacgaggggatcctggagcc
ccaggcccaaaggggaaacaaggtgaatcaggagctagaggcccaaaggggtcaaagggt
gatcatggagataaaggagactctggagctctgggaccacggggtccacctgggcagaag
ggagatccaggagctactgagatcatagactacaatggcaacctccacgaagccttacag
aggatcaccaccttaaccgtcacgggcccccctggacctcctggacctcaaggactacaa
gggccaaagggtgagcaaggatctccaggaattcccggagttgatggagaacagggactc
aaaggctccaagggagatgtgggggacccagggatgccaggtgaaaaaggaggaattggc
cttcctggactcccgggtgccaatggagtgaaaggagagaaaggagactctgggttgcca
ggtcctcagggtccttctatcataggcccaccaggccctccaggtccccatggcccgcct
ggccccatgggaccccatggacttcctggaccaaagggtgaaccagggttaaatggtgtt
aaaggattgaagggtgaaccaggccaaaagggtgacagaggaccccttggtcttccagga
gcatctggcttagacgggaagccaggatcccggggtgcagatggtcctataggaccccat
ggccctgcaggtcccaaaggagaaagaggagaaaaaggagctgtgggagagcctggaccc
agagggccctatgggctgcctggcaaagatggagagcctggtcttgatggcttccctggt
cctcgaggcgagaagggtgacctgggagaaaagggagaaaagggattccgtggcgttaag
ggggaaaagggggagccaggccagcctggcctggatgggctggatgccccttgccaattg
ggacctgatggattacccatgcctggttgctggcaaaagtga
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