Peromyscus leucopus (white-footed mouse): 114683168
Help
Entry
114683168 CDS
T07241
Symbol
Xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114683168 (Xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pleu03019
]
114683168 (Xab2)
03041 Spliceosome [BR:
pleu03041
]
114683168 (Xab2)
Messenger RNA biogenesis [BR:
pleu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
114683168 (Xab2)
Spliceosome [BR:
pleu03041
]
Complex B
Other components
Prp19-related factors
114683168 (Xab2)
Complex C
114683168 (Xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
TPR_8
TPR_12
Suf
TPR_15
ARM_TT21_C
ARM_TT21
TPR_16
TPR_1
TPR_21
Motif
Other DBs
NCBI-GeneID:
114683168
NCBI-ProteinID:
XP_028713185
LinkDB
All DBs
Position
23:complement(36121492..36133246)
Genome browser
AA seq
881 aa
AA seq
DB search
MVVMARVPRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKVGSRRGGGCSVF
MHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETA
VRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELC
DLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAVRT
VMTVRDFTQVFDSYAQFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLL
NSVLLRQNPHHVHEWHKRVALHQGRSREVINTYTEAVQTVDPFKATGKPHTLWVAFAKFY
EDNRQLDDARVILEKATKVNFKQVDDLASVWCQYGELELRHGNYDEALKLLRKATALPAR
RAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYA
MFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALD
GCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGV
THTRGIYQKAIEVPATSDQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSYCSQI
CDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATG
TVSDLAPGQSGMDDMKLLEQRAEQLAAEAERDQPPRAQSKIFFVRSDASREELAELAQQA
NPEEIQLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgcgttccgcgtcccgagcggccggatcttgtttttgaggaagag
gaccttccctatgaggaagaaatcatgcggaaccagttctccgtcaaatgctggctccgc
tacatcgagttcaaacagggggccccgaaaccccggctcaatcagttgtacgagcgggcg
ctcaagctgcttccctgcagctacaaactctggtaccgctatctgaaggcacgccgggca
caggtgaagcatcgctgtgtgactgatcctgcctatgaagacgtcaataactgccatgag
agggcctttgtgttcatgcacaaggtggggagccggagaggagggggatgcagtgtgttc
atgcacaagatgccacgtttgtggctagactactgccagttcctcatggaccagggacga
gtcacacacacccgccgcacctttgaccgtgctctccgggcactacccatcacacagcac
tctcgcatctggcccctgtatcttcgcttcctgcgctcccacccactgcctgagactgct
gtgagaggctaccgtcgcttcctcaagctcagtcctgagagtgccgaggagtacatcgag
tacctcaaatccagtgaccggctggacgaggctgcacagcgcctggccaccgtggtcaat
gatgaacgctttgtgtccaaggcgggcaagtccaactaccagctgtggcacgagctgtgc
gaccttatctcccagaacccggacaaggtacagtccctcaacgtagatgccataatccgt
ggtgggctcacccgcttcaccgaccagctgggcaagctgtggtgctccctggctgactac
tacatccgcagtggccacttcgagaaggctcgggacgtgtatgaggaggctgtccgcacc
gtgatgactgtgcgagacttcacccaggtgttcgacagctatgcccagtttgaggagagc
atgatcgcggcaaagatggagactgcctctgaactggggcgcgaggaggaggatgatgtg
gacctggagttgcgcctggcccgcttcgagcagctcattagccggcggcccctactcctg
aacagcgtcctgctgcgccagaatccgcaccatgtccacgagtggcacaagcgtgtggcc
ctgcatcagggccgctcccgggaggttatcaacacgtacacagaggctgtgcagacagtg
gaccccttcaaggccacaggcaagccccacacactgtgggttgcatttgccaagttttat
gaagataacagacagctggatgatgcccgtgtcatcctagagaaggccaccaaggtgaac
tttaagcaagtggatgacctggcaagcgtgtggtgccagtatggggagttggagctccgg
catgggaattatgatgaggccttgaagctgctgcggaaagccacagcgctgcctgcgcgc
cgggctgagtactttgatggttcggagcccgtgcagaaccgtgtatacaagtcactgaag
gtgtggtccatgcttgccgacttggaggaaagtctgggcaccttccagtcaaccaaggcc
gtgtacgaccggatcctggacctgcgcatagccacaccgcagatcgtcatcaactacgcc
atgttcctggaggagcacaagtacttcgaggagagcttcaaggcatatgagcgtggcatc
tcactgttcaagtggcccaacgtgtcagacatctggagcacctacctgaccaaattcatt
gcccgctatgggggccgcaagctggagcgcgcacgggacctcttcgagcaggcactagac
ggctgcccacccaaatatgccaagaccctgtacctgctttacgcacagctggaggaggag
tggggccttgcccgtcacgctatggctgtgtacgaccgcgctacccgggcagtggagcca
gcccagcagtatgatatgttcaacatctacatcaagcgggctgctgagatctatggcgtc
acccacactcgtggcatctaccagaaggccattgaggtacccgccactagtgaccagaag
gccattgaggtgctgtccgatgagcacgcccgtgagatgtgcctgcggtttgcagacatg
gagtgcaagcttggtgaaattgaccgagcccgtgctatctacagctactgctcccagatc
tgtgatcccaggaccactggggcattctggcaaacatggaaggactttgaggttcggcac
ggcaatgaggacaccatcagggagatgctgaggatacgtcggagtgtgcaggccacatac
aatactcaggtcaacttcatggcttcgcagatgctcaaggtgtcaggcagtgccacaggc
accgtgtctgacctggctcctgggcagagcggcatggatgacatgaagttgctggagcag
cgggcagagcagctcgcagctgaggctgagcgggaccagcctccaagggcccagagcaag
atcttctttgtgaggagcgatgcatccagggaggagctggcagagctagctcagcaggcc
aaccccgaggagatccagctgggcgaggacgaggatgaggatgagatggacctggagccc
aatgaagtccgactggagcagcagagcgtgccagctgctgtgttcgggagcctaaaggaa
gactga
DBGET
integrated database retrieval system
