Peromyscus leucopus (white-footed mouse): 114685877
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Entry
114685877 CDS
T07241
Symbol
Polr1a
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
114685877 (Polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pleu03021
]
114685877 (Polr1a)
Enzymes [BR:
pleu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
114685877 (Polr1a)
Transcription machinery [BR:
pleu03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
114685877 (Polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
Motif
Other DBs
NCBI-GeneID:
114685877
NCBI-ProteinID:
XP_028716356
LinkDB
All DBs
Position
3:88278047..88340872
Genome browser
AA seq
1718 aa
AA seq
DB search
MLASKHTPWRRLQGISFGMYSAEELKKLSVKSITNPRYVDSLGNPSANGXYDLALGPADS
KEVCSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLL
ICQLRVLEVGALQAVYELERILSRFLEETADPSAFEIQEELEEYTSKILQNNLLGSQGAH
VKNVCESRSKLISYFWKTHMAAKRCPHCKTGRSVVRKEHNSKLTVTYPAMVHKKSGQKDA
EPPEGVPEAPGIDEALMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGMESSFN
PSMFFLDFIVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPC
EMTELTPDKESDSSVAIDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMLEK
YPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVT
PWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTPATGALKPQ
GTKIVCRHVRNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDE
MNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFSREQY
MELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLNLSGKAKIGS
KAWVKETPRPVPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGET
SGRVLTCLARLFTXYLQLYRGFTLGVEDILVKPDADVKRQRIIEESTQCGPRAVRAALNL
PEAVSCDEIQGKWQDAHLGKNQRDFNMIDMKFKEEVNHYSNEINKACMPFGLHRQFPENN
LQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTG
RFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGS
VVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRADPQKVLRHFKAIK
KWHSKHSNALLRKGAFLSFSQKIQAAVKALNLKGKNENGRSPETQQMLQMWYELDEQSRR
KYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKIDDYSQEWAAQAERSYKKSELSLDRLR
TLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILM
VASANIKTPMMSVPVFNTKKALRRVKSLKKQLTRVCLGEVLQKVDVQESFHMGEKQNKSR
VYELRFHFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKRKNSKASAFRSVNTRRAT
QKDLDDAEDSGKNRREEEGDEEEEGNIVDAEAEEGDADASDTKRREKQEEEVDYESEEEG
EEEGEDEDAQEEGPVNGEAAHRAHETGEEEGSGLEEESSQNPAHRRHSRPQGAEAVEGRI
QAVRETHSFIEDYQYDTEESLWCQVTLKLPLMRINFDMSSLVVALAHNAIVYTTKGITRC
LLNETTNSRNEKELILNTEGINLPELFKYSEVLDLRRLYSNDIHAMANTYGIEAALRVIE
KEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSSSSPLQQMTFETSFQFLK
QATMMGSHDELKSPSACLVVGKVVKGGTGLFELKQPLR
NT seq
5157 nt
NT seq
+upstream
nt +downstream
nt
atgctagcctccaagcacacgccatggaggcggcttcagggcatttccttcgggatgtat
tcggccgaggagctcaagaaattaagcgttaaatccattaccaatcctcgctatgtggac
agtctgggaaacccttcagcaaatggcntgtatgatttggcattgggtcctgcagattcc
aaagaagtgtgctccacctgtgtacaggacttcagcaactgctcgggacacctgggccac
attgagctcccgctcacggtgtacaaccctctcctcttcgataaactctacctcctgctc
cgaggctcctgtttaaattgccacatgctgacttgtcctcgggctgccattcacctgttg
atctgccagctgagggtcctggaagttggagccctccaagcagtttatgagcttgagcga
attctgagcaggtttctggaagagactgctgacccttccgccttcgaaattcaagaagag
ttagaagagtacacaagcaaaattctgcagaacaacctcttggggtcccaaggagcacat
gtgaaaaatgtctgcgaaagcaggagcaaactcatttcttacttctggaagacgcatatg
gctgctaagcgatgtccccactgcaagaccggccggtcagtggttcggaaggagcacaac
agtaagctgacagtcacatatccagccatggtgcacaagaaatctggccagaaggatgca
gagcccccagaaggagtaccagaagctccaggaattgacgaagccctgatggggaagcga
gggtacctgacacctagcagcgcccaggagcatctttttgccatctggaagaatgaaggg
ttcttcctgaattaccttttttcgggattggatgatattggcatggagtccagtttcaac
cccagcatgttctttctagatttcatagtggtgccaccctccaggtatcgtcccgtcaat
cgccttggggaccagatgtttactaatggccagacggtgaacttgcaagctgtcatgaag
gatgccgttttgatccggaaacttctggcgttgatggcccaagaacagaagctgccctgt
gagatgacagaactcaccccagacaaggaaagcgactcttcagttgctattgaccgatcc
tttttaagtatgcttccaggccagtctctcacagataaactttacaacatttggattcgc
cttcagagccacgtcaatattgtgtttgacagcgagatggacaaattaatgttggagaag
taccctggcataagacagatcctagagaagaaggaaggcctgttccggaagcacatgatg
ggaaagcgagttgactatgcagcccgctcagtcatctgcccagatatgtacatcaacacc
aatgaaatcggaattcccatggtatttgccacaaaactgacctatcctcagccagttacc
ccttggaacgtgcaggaactgagacaagcagtcatcaatggacccaacgtgcacccagga
gcctccatggtcatcaatgaggatggcagtcgtacagccctgagcgcagtggatgctaca
cagcgggaggctgtggccaaacagctcctgacaccagccacaggggctctgaagccccag
gggacgaaaattgtgtgccggcatgtgaggaatggggacattctccttctgaaccgacag
cctaccctgcacaggccctccatccaggcccaccgtgcccacatcctgcctgaagaaaag
gtcctacgtcttcactatgccaactgcaaagcctacaatgctgactttgatggagatgag
atgaacgcccacttcccccagagtgagttgggccgagctgaagcctatgtcctggcctgc
actgatcagcagtatcttgttcccaaggatggccagcctttggcaggactgattcaagat
cacatggtttcgggtgcaaacatgaccattcggggatgctttttcagccgggaacagtac
atggaactggtgtaccgagggctcacagacaaagtggggcgtgtgaagctctttcctcct
gccatcctgaagcctttcccgctgtggacaggaaagcaggttgtgtcaaccctgctcata
aacataatcccagaggactacgcccccctgaatttatctggaaaggcaaaaattggcagc
aaagcctgggtgaaggaaacccctcggcctgttcctgactttgaccccgactctatgtgt
gagtcccaggtgatcatcagggaaggggagctgctctgcggagtgctagacaaggcacac
tacgggagctctgcctacggcctggtccactgctgctatgagatctacgggggagagacc
agcggcagggtgctcacctgcctggcccgcctcttcacgncctacctgcagctctacaga
ggtttcaccttgggtgtagaagacattttggttaagccagatgcagacgtgaagagacag
cgcatcattgaagaatccacccagtgtgggccccgggctgtcagggctgcattgaaccta
ccagaagctgtgtcatgtgatgagatccaagggaaatggcaggatgcccatctgggcaaa
aaccagagggatttcaacatgattgatatgaagttcaaggaggaagtgaaccattacagc
aatgagatcaacaaggcatgtatgcctttcggcttgcacagacagttccccgagaacaac
ctccagatgatggtgcagtcgggagccaaagggtcgactgtgaacacgatgcaaatctct
tgcctgctgggccagattgagttggaaggtcggagacccccgctgatggcatctggcaag
tcactgccctgctttgagccttacgagttcacccccagggctggcggcttcgtcactgga
aggttccttaccggtatcaggcctcctgagttcttcttccactgcatggcgggacgagaa
ggcctggtggacaccgctgtcaaaaccagccggtctggctatctccaaaggtgtatcatc
aagcacctggaggggctggtcatccagtatgatctgacagttcgtgacagtgatggcagt
gtggtacagttcctgtatggggaggatggcctggacatccccaagacacagtttctgcag
cccaagcagttccccttcctggccagtaactacgaggtgataatgaaatccaagcatctt
catgaagttttatccagagcagatccccagaaagtgctccgccacttcaaagccattaaa
aaatggcatagcaagcattctaatgccctgctgagaaaaggcgcctttctgagtttttcc
cagaagattcaggcagctgtgaaagccttgaacctaaagggcaagaacgagaatggccgc
agcccagaaacccagcagatgttacagatgtggtatgaattagatgagcagagtcggcgg
aaataccagaagagggccgctccgtgtcctgaccccagcctgtctgtgtggcgcccggac
atctactttgcgtctgtgtctgaaacgtttgaaaaaaagattgatgactacagtcaggaa
tgggcagctcaggcagagaggagttacaagaaatcagagctttctctcgacaggctgaga
accttactgcagctgaagtggcagcgctcactgtgtgacccaggcgaggctgttggcctg
ctggctgcccagagcatcggggagccctccacacagatgacactgaacaccttccacttt
gcaggcagaggcgagatgaatgtcaccctgggcattccgagattgagggagattctcatg
gtggccagtgccaacatcaagacacccatgatgagcgtgcctgtgttcaacaccaagaaa
gccctgaggagagtgaagagcctgaagaagcagctcaccagggtgtgcctgggggaggta
ttgcagaaagttgatgtccaagagtccttccatatgggggaaaaacagaacaaatcccgg
gtgtatgagctccgctttcacttcctgccacatgcgtattaccagcaggagaagtgcctg
agacctgaggacatcttgcacttcatggaaaccagattctttaaactcctaatggaagcc
atcaaaaggaagaatagcaaagcatcagccttcagaagtgtgaatactagaagagctaca
cagaaggaccttgatgacgctgaggactcggggaagaatcggagagaggaagagggggat
gaagaagaggaggggaacattgtggatgctgaagctgaggagggggatgcagatgcttct
gacaccaaacgcagggagaagcaagaggaagaggttgactatgagagtgaggaggaaggg
gaggaggaaggggaggatgaggatgcacaagaggaagggcctgtcaacggtgaagctgcc
caccgggctcatgagactggcgaggaagagggttcaggcctggaggaggagtcgtcccag
aaccctgcccaccgccggcactccaggcctcagggagcagaggccgtagaaggccgcatc
caggctgtgcgggagacccactcgttcattgaggactaccagtacgacacggaggagagc
ctctggtgccaggtgacgctgaagctcccactgatgaggattaattttgacatgagctcc
ttggttgtggccttggcccacaatgccattgtctataccaccaagggcatcactcggtgc
ctcctgaatgagactaccaacagtaggaatgagaaggaacttatactgaacacagaggga
atcaacctccccgagctgttcaagtactctgaggtgctggacctgcgccgcctctactcc
aacgacatccacgccatggccaacacttacggcatcgaggctgcactgcgggttattgag
aaggagattaaggatgtgtttgctgtgtacggcattgcagttgatcctcgccatctctcc
ctggtcgccgactatatgtgttttgaaggtgtttataagccactcaatcgctttgggatc
cagtcaagttcctcccctttgcagcagatgacatttgaaaccagcttccagtttctcaaa
caggccaccatgatgggatcccatgatgaactgaagtcaccttcggcctgtctcgtggtg
gggaaagtcgtcaaaggtgggacaggcctgtttgagctcaagcagcccctgagatag
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integrated database retrieval system
