Peromyscus leucopus (white-footed mouse): 114686337
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Entry
114686337 CDS
T07241
Symbol
Nup88
Name
(RefSeq) nuclear pore complex protein Nup88
KO
K14318
nuclear pore complex protein Nup88
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03013
Nucleocytoplasmic transport
pleu05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114686337 (Nup88)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
114686337 (Nup88)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pleu03019
]
114686337 (Nup88)
Messenger RNA biogenesis [BR:
pleu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
114686337 (Nup88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup88
DUF7344
DUF659
FliJ
Motif
Other DBs
NCBI-GeneID:
114686337
NCBI-ProteinID:
XP_028716830
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All DBs
Position
8b:complement(54008421..54036504)
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AA seq
744 aa
AA seq
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MAAAEGPAGDGELWQSWLPNHVAFLRLREGLKSRSPAEAEKPAASTSPSCPPLPPHLPLT
RNLVFGLGGELFLWDAEDSAFLVVRLRGPSGGSVEPPLSQYQRLLCINPPLFEIHQVLLS
PTQHHVALIGMKGLMALELPQRWGKDSEFEGGKATVNCSTTPIAERFFTSSTSLTLKHAA
WYPSEMLDPHIVLLTSDNVIRIYSLREPQTPTKVIVLSEAEEESLILNKGRAYTASLGET
AVAFDFGPLATVSKNIFGQKGQEEAVAYPLYILYENGETFLTYVSLLHVPGNIGKLLGPL
PMHPAAEDNYGYDACAVLCLPCVPNILVIATESGMLYHCVVLEGEEEDDQTSEKSWDPRV
DLIPSLYVFECVELELALKLASGEDDPYASDFSCPIKLHRDPKCPSRYHCTHEAGVHSVG
LTWIHKLHKFLGSDEEDKDSLQELAAEQKCFVEHILCTKPLPCRQPAPIRGFWIVPDILG
PTMICITSTYECLIRPLLSTVHPASPPLLCTREDAEVAESPLRILAETPDSFEKHIKSIL
QRSAANPAFLKSSEKDLAPPPEECLQLISRATQVFREQYILKQDLAKEEIQRRVKLLCDQ
KRKQLEDLNYCREERKSLREMAERLADKYEEAKEKQEDIMNRMKKVLHSFHTQLPVLSDS
ERDMKKELQLIPDQLRHLGNAIKQVTMKKDYQQRKMEKVLSPQKPTITLSAYQRKCIQSI
LKEEGEHIREMVKQINDIRNHVNF
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgccgaggggcctgcgggtgacggggagctgtggcagagctggctccctaac
cacgtcgcgttcttgcggctccgcgagggcctgaaaagcaggagtccggccgaagcggag
aagccagcggcctcgacttctccctcgtgccctccgctgccgccgcatttgccgctgacg
agaaacctggtcttcggcctcggaggggagctctttctgtgggacgcagaagacagcgcc
ttcctggtggttcgccttcgcggccccagcgggggcagcgtggagccccctctctcgcag
taccagagattactttgcataaatccacccctgtttgaaattcatcaagtcttgttaagt
cccacgcaacatcatgtagcacttataggaatgaaaggacttatggcattagaattacct
caaagatggggaaaggattctgaatttgaaggtggaaaagcaactgtgaattgtagtacc
acgccaattgctgagagatttttcaccagctctacctctctgactctgaagcatgctgcg
tggtatccaagtgagatgctggatccccacatagtgctgttgacgtcagacaatgtgata
agaatttactctctccgtgagcctcagacacccactaaggtgattgtactttcagaagca
gaggaggaaagcttaatactcaataaaggaagggcatatacagcatctctaggagagact
gcagttgcatttgactttgggccactggcaacagtctcaaaaaatatatttggacaaaaa
ggccaagaagaagcggtggcatatccactgtacatcttatatgagaacggagagaccttc
ctcacctacgttagtctgttacatgtccctgggaatattggaaagctgttgggaccgttg
cccatgcaccctgcagctgaagataactacggttacgacgcctgtgctgtactctgtttg
ccctgtgttcccaatatcttagtaattgcgactgagtcaggaatgctgtaccactgtgtt
gtcctggagggggaggaagaagacgatcaaacatcagaaaagtcctgggatcccagggtt
gacctcatcccttctctgtatgtgtttgagtgtgttgaattagagcttgccttgaaactg
gcatctggagaggatgatccctatgcttctgacttttcctgtccaattaaactgcacaga
gatcccaagtgtccttcgagataccactgtacccatgaagctggcgtgcacagtgttggg
ctgacttggattcacaaacttcacaagtttcttggatcagatgaagaagataaggatagt
ttacaggaacttgctgcagagcagaaatgctttgtagagcacattctttgtacaaagcca
ttgccatgcaggcaaccagctccaattcggggattctggatcgtcccggacatcctgggg
cccacgatgatctgcatcaccagtacctatgaatgtctcataaggcctttattaagtaca
gtccacccagcatctcctcccctgctgtgtacccgagaggatgctgaagtggcagagtct
ccgctgcgcatcctggccgaaaccccagactccttcgagaagcacattaaaagcatcttg
caacgtagtgccgccaacccagcatttcttaagtcatctgaaaaggatttggctccccct
cccgaggagtgtcttcagcttatcagcagagccacccaggtgttcagagaacagtacatt
ctcaagcaggacctggccaaggaagagattcagcggagggtcaaattattatgtgaccaa
aagaggaaacaactagaagatctcaattactgtcgtgaggagaggaaaagcctacgggag
atggccgagcgcttagctgacaaatatgaagaagccaaagaaaaacaagaagacatcatg
aacaggatgaaaaaagtgcttcacagtttccatactcagctcccagttctctctgacagt
gagagagacatgaaaaaagagttacagctgatacctgatcaactacgacatctgggcaat
gccatcaaacaggttactatgaaaaaagattatcaacagcgaaagatggaaaaagtgctg
agtcctcagaaacccaccattaccctcagtgcctaccagcgaaagtgcatccagtccatc
ctgaaggaagagggtgaacacataagggaaatggtgaagcaaatcaacgatatccgaaat
cacgtcaacttctga
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