Peromyscus leucopus (white-footed mouse): 114690434
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Entry
114690434 CDS
T07241
Symbol
Helz
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pleu03019
]
114690434 (Helz)
Messenger RNA biogenesis [BR:
pleu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
114690434 (Helz)
3'-5' decay
Other 3'-5' decay factors
114690434 (Helz)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
UvrD-helicase
AAA_30
ResIII
PAM2
PhoH
zf_CCCH_4
zf-CCCH_4
Mov-10_helical
AAA_22
nSTAND_NTPase5
AAA_16
Bac_DnaA
AAA_7
Mg_chelatase
AAA_5
Motif
Other DBs
NCBI-GeneID:
114690434
NCBI-ProteinID:
XP_028721065
LinkDB
All DBs
Position
8b:complement(84597382..84755162)
Genome browser
AA seq
1958 aa
AA seq
DB search
MEDRRAEKSCEQACESLKRQDYDMALQHCTEALLSLGQYSMADFAGPCPLDIERIKIESL
LYRIASFLQLKNYGQADEDCRHVLGEELAKGEGAFRAVLCCMQLKGKLQLVSSILAKSLS
GESLNGMVTKDLTRLKTLLAETETATSNVLSGCHVEDLDEGSCNGWHFRPPPRGITSSEE
YTLCKRFLEQGICRYGAQCTSAHSQEELAEWQKRYASRLIKLKQQNENKQLSGSYMETLI
EKWMSSLSPEKVLSECIEGVQVEHNPDLSVTVNTKKSHQTWTFALTCKPARMLYRVALLY
DAHRPHFSIIAISAGDSTTQVSQEVPENCQEWIGGKMAQNGLDHYVYKVGIAFNTEIFGT
FRQTIVFDFGLEPVLMQRVMIDAASTEDLEYLMHAKQQLVTTAKRWDSSSKTIVDFEPNE
TTDLEKSLLIRYQIPLSADQLFTQSVLDKSLTKANYQSRLHDLLYIEEIAQYKEVSKFNL
KVQLQILASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVP
KEKLVQTQGTKEKVYEATIEEKTKEYIFLRISRECCEELNLRPDCDTQVELQFQLNRLPL
CEMHYALDRIKDNGVLFPDISMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIQ
LPPVLIIGPYGTGKTFTLAQAVKHILQQQETSRILICTHSNSAADLYIKDYLHPYVEAGN
PQARPLRVYFRNRWVKTVHPVVHQYCLISSAHSTFQMPQKEDILKHRVLVVTLNTSQYLC
QLDLEPGIFTHILLDEAAQAMECETIMPLALATKDTRIVLAGDHMQLSPFVYSEFARERN
LHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYP
LTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQ
VFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDS
TEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPVALCSIGRCRKFWERFIALCHENHSLHG
ITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRLQHSGNSSRQQQSPPKGKSLHHPQSD
HFQNDGVVQPNPSVLIGNPIRAFTPPPPLGPHPSLGKSPSPVQRIDPHTGTSILYVPAVY
GGNVVMSVPLPVPWTGYQGRFAVDPRIITHPAAMAYNMNLLHTHGRGSPIPYGLGHHPPV
NIGQPQNQHAEKDQQEQNRNGKTDTNNPGPEINKIRTPEKKPTEPKQVDLESNPQNRSPE
SRPSVVYSNIKFPRKDNLNPRHINLPLPAPHAQYAIPGRHFHPLPQLPRPPFPIPQQHTL
LNQQQNNLPEQPNQVAPQPNQVAPQPNQVVPQPNQVVQQQSQAPPQAPQPLPQLSPAYQA
GSTSAFFNNAAAHRPQSPPAAEAVVPEQQPPPVLPDGHSPLRAITQPGPILASPLNNFVD
ESSPGLPVGDALDRVHGSVALETLRQQQARLQQWREQHAYLSQGSIPHPHHHHPHLPHLP
QPPLGLHQPAVRAEWKLAGRVEDEAETPFSRFQDLLRELSHRDQGDTREQAEMPPPQSRL
LQYRQVQTRSPPAVPSPPSTTDLSSHFANFNDNSRDIEAANNPAFPQRLPPQLFGSPFSL
PSEHLAPPSLKYLAPEGAWNFANLQQNHLIGPGFPYGLPPLPPRPPQNPFVHIQNHQHAV
GQEPFHPLSARTVSSSSLPSLEEYEPRGPGRPLYQRRISSSSAQPCVEEASTPQGSLAQG
KELQDRNRPPAFSFPAPESWANTTSPAPYQNIPCNGPSRTAQPRELIAPPKTVKPPEEQL
KPDGTEVSSSFNYTVLQHLGQFPPLLPNKQIAESATSSSQQSPAGSKPAMSYASALRAPP
KPRPPPEQAKKGSDPLSLFQELSLGSSPGSNGFYSYFK
NT seq
5877 nt
NT seq
+upstream
nt +downstream
nt
atggaagacagaagagctgaaaagtcatgtgaacaagcgtgtgagtccctgaagaggcag
gactatgacatggccctccagcactgcacagaggccctactttcccttggccagtactcc
atggcagacttcgcagggccgtgtccactggatatagagcgtatcaaaatcgagagtctt
ctttacagaattgcctcattcttgcaactgaaaaactacgggcaagctgatgaagattgt
aggcatgtactgggggaagaactggccaagggagagggtgccttccgggcggtgctgtgc
tgcatgcagctcaaagggaagctccagcttgtgtcctccatccttgccaagtcactatca
ggagagtctctgaatgggatggtaacgaaagatttgacaagactcaagacacttctcgca
gagaccgagacagcaacaagtaatgtcctctctggatgtcatgtggaagacttagatgaa
gggtcttgtaacggttggcatttccgcccgccacccaggggaatcacaagcagcgaggaa
tatactttgtgtaaaaggtttttagagcaaggaatctgtaggtatggtgcccagtgtact
tcagcacattcccaggaagaattagcagagtggcagaaaagatacgcctcccggttaata
aaactgaagcagcaaaatgagaacaaacagctctcaggcagctacatggaaaccttgata
gagaagtggatgagctcactgtctcctgagaaagtgcttagcgaatgcatagagggagtt
caggtggagcacaaccctgacctgtcggtcaccgtcaacaccaaaaaatctcaccagaca
tggacttttgctctgacctgtaagcctgcaagaatgctgtatcgggtagcattgctttat
gatgctcatcgtcctcattttagtatcattgccatatctgccggagatagtactacccag
gtatcacaagaagtccctgaaaactgtcaagaatggataggaggaaagatggcccaaaat
ggattagatcattacgtgtataaagtcgggatagcatttaacacagaaatatttggaact
tttcgccaaaccatagttttcgactttggattggagccagtactcatgcaaagagtaatg
attgatgcagcttctacagaagatcttgaatatctgatgcatgcaaaacagcagctggta
accacagccaagcgctgggattcttcttctaagactattgtagattttgaacctaatgaa
actactgacttggagaagagccttctgatcagataccaaattcctctttctgctgaccag
ctgtttacacagtccgttttagacaaatcattgaccaaggctaactatcagtcacggttg
catgacctgctttatattgaagagatagcccagtataaagaagtcagcaagttcaacctt
aaagtgcaattgcagattttagcaagcttcatgctcactggagtttctgggggtgcaaag
tatgctcagaatggacaactttttggtcgttttaagcttactgaaaccctttctgaagat
actttggctggaagactggtgatgaccaaagtcaatgctgtttatttattaccagtccct
aaagagaagctagtacagacccagggaaccaaagagaaggtttatgaagctactattgaa
gaaaaaacaaaagagtatatatttttaaggatatccagggaatgctgtgaagagcttaat
cttcggcctgactgtgacacacaggtcgagcttcagtttcagttgaatcgattacccctc
tgtgaaatgcattatgcactagacaggattaaggacaatggtgttttgtttccagacatc
agtatgactcctaccataccttggagtcctaacagacagtgggatgagcagttggatcct
cggctaaatgcaaaacagaaggaagctgttctggccatcaccacaccactctccatccag
ctgccgcccgtcctcatcatcggaccctatgggacaggcaaaaccttcacactggctcag
gccgtcaagcacatactgcagcagcaggagacgagcaggattctcatttgcacccattct
aatagtgctgctgacctctacataaaggattatttacatccatatgtagaagcaggcaat
ccccaggcaagacctctcagggtgtactttcggaaccgctgggtgaagactgtccacccg
gttgtgcaccagtactgtttgatctcaagcgcacattccacctttcagatgccccagaag
gaggacattcttaaacatcgagtgctggtggtcaccctgaacacttcccagtacctctgc
cagctggaccttgagcccgggatttttacacacattctgttagatgaagctgcccaggcc
atggagtgcgagaccattatgcctctagccttggcaacgaaagacacgcggattgttttg
gctggtgatcatatgcagctcagtccttttgtttacagcgagtttgccagggagagaaac
cttcacgtttcattacttgatcgactctacgagcattaccctgccgagtttccatgtagg
atcctcctctgtgagaactatcgctcccatgaagctatcatcaactatacctctgagctt
ttctatgagggtaaactgatggccagtggaaagcagccagcacacaaggacttctaccca
ctgacattctttactgcacgaggggaagacgtacaagaaaaaaatagcacagccttttat
aacaatgcagaggtgtttgaagtggtggagcgtgtggaagagctaagaaggaagtggcca
gttgcctgggggaagttagatgatggcagtattggtgtggtgactccatatgctgaccag
gtctttaggatccgtgctgaacttcggaaaaagagactctctgatgtgaatgtagaaagg
gtgctgaatgttcaaggaaagcaattcagagttctgtttcttagcacagtacgtacacgc
cacacttgcaagcataagcagacaccgattaaaaagaaagagcaacttctggaagactcc
actgaggacttagattatggttttttgtctaactacaaacttctcaatactgccatcaca
agagcacagtccctggttgctgtggtgggagaccccgttgctttgtgctctattggaagg
tgtaggaagttttgggagcgatttattgccctgtgtcatgaaaatcatagcctacatggg
atcacatttgaacagatcaaggcacagttagaggctttagaactcaagaagacgtatgtg
ttgaatccactggctcctgaatttattccccgggctttacgactgcagcattcaggcaac
agcagcagacagcagcagtcaccacccaaggggaaaagccttcatcatccccagagcgac
cacttccagaatgatggtgttgttcagcccaatccttctgtactcattggcaatcctatt
agagcatttactcctccaccccctcttggacctcacccaagtttgggaaagtctccaagc
cccgttcaaagaatagatcctcacaccgggacaagtattctttatgtacctgctgtctat
ggagggaatgtggtcatgtcggtgcctttgcctgtgccatggacaggataccagggtagg
tttgcagttgatcctaggattattacacacccagcagcgatggcctacaatatgaaccta
ttacatacacatggacgtggatcgccgatcccctatggccttggacatcacccacctgtc
aacatagggcagccgcagaatcagcatgcagagaaggatcaacaggagcaaaatcgaaac
ggtaaaactgatacaaataaccctggacctgaaattaataagatccgaacaccagagaaa
aagcctacagagcccaaacaggttgatttggaatcaaatccacagaacagaagtcctgaa
tcccgtcccagcgttgtttattccaatatcaaatttcctcgaaaagataatctcaaccca
agacacataaatcttcctcttcctgcaccacacgcacagtatgcaatccctggccgccat
tttcacccgcttcctcagctacccaggccaccatttcccattccccagcagcataccttg
ttaaatcaacagcagaataatttgcctgaacaaccaaatcaggtggcaccccagccaaat
caagtggcaccccagccaaatcaggtggtaccccagccaaatcaggtggtccagcagcaa
agccaggcaccaccacaggccccgcagccactgcctcaactctctcctgcatatcaggca
gggtccaccagtgcgtttttcaataatgcagctgctcacagaccacagtctcctcccgct
gcagaggctgtggttcccgagcagcagccacctcccgtgcttcctgacggccacagtccg
ctgagagccatcacacagcctggtcccatcctggcatctcctctgaacaactttgttgat
gagagctccccaggattgcctgtaggagatgctttggatcgagtgcacggaagtgtggct
ctggagacactgaggcagcagcaggctcggctgcagcagtggagggagcagcatgcctat
ctcagccaaggcagcatcccgcatccacaccatcaccatcctcacctcccgcatcttccc
cagccaccccttggcctccaccagccagcagtgagggcagagtggaaactcgctggcaga
gttgaggatgaagcagagacaccgttctcaaggtttcaggacttactcagagagctgtct
catcgtgatcaaggtgacactagagaacaggctgaaatgccaccacctcagtcaagactt
ttgcaatacagacaagttcagaccagaagcccaccagcagtcccgtctcccccttccacc
acagacctcagcagccactttgctaactttaatgacaacagcagagacattgaagcagcc
aacaacccagcattcccacagcgcctcccacctcagctcttcggctcccccttttcgttg
ccctctgaacaccttgccccaccttccctgaaatatctggctcctgaaggagcgtggaat
tttgctaacttgcaacagaatcacttaatagggccgggttttccctatggcctacctcca
ttgcctcccaggccaccgcagaacccttttgtacacatccagaaccatcaacatgctgtt
ggtcaagagccatttcacccactgtcagctcgcacagtgtcttcttcttcgctccccagc
ctagaagagtatgagcccagaggacctggtcggcccttgtaccaaagaagaatttcatct
agctcagcccagccttgtgtggaagaggcaagtactccacaaggcagcctggctcagggc
aaagaactgcaggaccgcaatcgcccgcctgctttcagcttcccagcccctgagtcctgg
gccaataccacctcacctgccccctaccagaacattccgtgcaatggacccagcaggaca
gcacagcccagagagttgatagcaccacccaagactgtcaagccccctgaggagcagctg
aagcctgacggcacggaagtgtccagttccttcaactacacggtgctgcagcaccttggc
cagttcccacccctcctgcccaacaagcagatcgcagagtcggccaccagcagcagccag
cagagcccggcagggagcaagcccgccatgtcctatgccagtgcgctgcgggccccgccc
aagcccagaccgccacccgagcaggccaagaagggcagcgaccctctgtccctgttccag
gagctcagcctgggcagcagcccgggcagcaacggcttctactcctacttcaagtga
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