Peromyscus leucopus (white-footed mouse): 114690967
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Entry
114690967 CDS
T07241
Symbol
Vps13c
Name
(RefSeq) vacuolar protein sorting-associated protein 13C
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pleu04131
]
114690967 (Vps13c)
Membrane trafficking [BR:
pleu04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
114690967 (Vps13c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_M
VPS13_N
VPS13_VAB
WWE
Motif
Other DBs
NCBI-GeneID:
114690967
NCBI-ProteinID:
XP_028721844
LinkDB
All DBs
Position
7:complement(4675964..4770984)
Genome browser
AA seq
3187 aa
AA seq
DB search
MWSWSNIKKHRQLLKSYKIAYKSKLTQTKVSEELQKQIQDLEKSLDVFNIILVRQQAQVE
VIHSGQKLRKKSTEAGEKRGWFSGFWGKKESKKKDEDSLIPETIDDLMTPEEKDKLFTAI
GYSESTYNLALPKQYVAHILTLKLVSTSIIIRENKNVPEILRIQIIGLGTQVSQRPGAQA
LKIEAKLEHWYVTGLRQQDIVPSLVASIGDTSSSLLKIEFETNPENSPADQTLIVQSQPV
EVIYDAKTINAVVEFFQSNKGLDLEQITSATLMKLEEIKERTATGLTHIIETRKTLDLRI
NLKPSYLIIPQTGFHHEKSNLLILDFGTFQLNSKDQGTQKTTNSSLEEIIDKAYDKFDVE
IKSVQLLFAKAEENWKKCRFQHPSTMHILQPMDIHVELAKAMVEKDVRMARFKVSGGLPL
MHVRISDQKIKDTLCLINSIPLPQKSSTQSPERQVASIPVLSGGTKGLLGTSLLLDGMES
DSDDEYFDAEDGDSQTVRTVKASELKKAPEVPNEELVNLLLKFEIKEVILELTKQQKEEE
TVLVFNVTQLGTEATMRTFDLTAVSYLRKISLDYHEIKGSKKKPLHLISSSDKPGLDLLK
VEYIKVDKNGPSFQTTFEKTEQTIKVAFSSLNLMLQTQALLSSLNYLTSIIPSDTENTGA
VKEAQAATEKQKNSPLQKAMVSSRDSDIIGFRLFAKLNAFCVTVCDEKSNIAEIKIQGLD
SSFSLQSKKQSLFARLENIIVTDVDPKTVHKKAVSIVGNEVFRFNLDLYPDATEGDSYTD
MSTVDGVVALHVGCIQIVYLHKFLMSLLNFLNNFQVAKEALSAATAQAAEKAATSVKDLA
QRSFRVSINIDLKAPVIVIPQSSISTNAVVVDLGLIRVHNQFSLVSGEDAVNPPVIDKME
VQLTKLKLSRTTIQPGVSHPDIQLLHPINLEFSVNRNLAANWYHKMPVVEIKGCLDSMNV
SLNQEDLNLLFRILAENLGEATGDLDKGKPRVQEIGGTKACREVSMPQGVHTTQDASPAR
VEETRSIDIINVLLNFEIKEVVVTLMKKAEKKGAPLHELKILHLGLEAKVKAHDMTAEAY
LREISMRCFDFPDSKGEPLYIVNSSNVSDGTLLKMLFTKADSDGPEFKTVHDNTKQKLKV
SFSSLNLVLHLEALLSLMDFLSSAVPSSDPSSSQKESELKPLVGESKSLAIKAVPSTSEG
DVFDLKITAELNAFNIFVCDQKSNIADIKIHGMDASISVKPKETDVFARLENIIVMNVDS
LSIHKKAVSILGDEVFRFQMTLYPDATEGEAYGDMSKVDGKLSLKVGCIQIVYVHKFFMS
LLSFLNNFQTAKEALSTATVQAAERAASSVKDLAQKSFRLLMDIDLKAPVITIPQSSASP
NAVIADLGLIRVENKFSLVPVEHFSLPPVADKMSIQLTQLKLSRTVLQSDSLQHDIEILK
PVNMLLSVQRNLSAAWYTEIPGMEIKGKLQPMQVALSQDDLTVLMKILLENLGEASSQPS
PTQSAQEAVRVKRDTRSGPDYLKEQELTDSKPPMDQTVTLQFAFHFDSLSIILYNNDSHQ
ESRLSFHNDSFRLGELRLHLMASAGKMFKDGSMNVSLKLKTCTLDDLREGIERATSRMID
RKDDQDNNSSMIDVSYRQDKNGSEIDAVLDKLYVCASVEFLMTVADFFIKAMPQSPENIA
KEIQIPSRQTAVGRVKMEKDESVRPNMTLKAMLTDPEVVFVANLTKADAPALTASFQCNV
SLSTSKLEQMMEASVRDLKVLACPFLRERRGKSVTTVLQPCSLFMEKCTWASGKQNINIM
VKEFVIKISPIILNTVMTILAAMSPKAKEDESRDTAEEMGNLWAIKSITDYNSWFLGVDT
ATEVTENFRDFDHPPVEENCVIAVESVQVTLECGLGHRTVPLLLAESKFSGNVKNWTSLM
AAAADMTLEVHYYNEIHAVWEPLIERVEGKTPWSLKLNVKKNPIQDKSLMPGDDFIPEPQ
MAVHISSGATMNITISKSCLNVFNNLAKGFSEGAASTFDYSLKDRAPFTVRNALGVPIKV
QPNRNLRVMGSLEKSDLYDVGAGQQLELEYASLEPSRQGKLSVLSRQESSFFTLTFVPHG
YTEVGSVPVARPGRRLYNVRNPSASRSDSVLVQIDATEGNKVITLRSPLQIKNHFSIAFI
IYKFVKNVKLFERIGIARPEEEFHVPLDSYRCQLYVQPAGSLEQQYTQSTTYISWKEELH
RSKEVRCMLQCPALEVNFLPLIVNTVALPDELSYIGAHGEDWDPAYVIHLYPPLTLRNLL
PYSLRYLLEGTAETHELAEGNAADVLHSRISGEIMELVLVKYLGKNWNGHLRICDTLPEF
FLVCFSSDTAEVMTVDLSVHVRRIGCRMELSVFSPYWLINKTSRVLQYCSEEIHVKHPAD
FRDIVLFSFKKKNIFSKNKVQLKISTSGWSSAFSLDTVGSYGCVKCPATNMEYLVGVSIK
MSSFNLSRIVTLTPFCTVANKSSLELEVGEIASDGSIPTNKWHYVASSECIPFWPENLSG
KLCVRVVGYEGSSKPFFYNRQDNGTLLSLEDLNGGVVVDINTAEHSTVITFSDYHEGSAP
ALIMNHTQWDVLTYKQSGSQEELVLLPKETRLFAWADPTGTRKLTWSYASNVGEHDLLKD
ECGQFPYDANIQIHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQADHEVTLSLHSLGL
SLVNNENKQEVSYVGITSSGVVWEMKPKQKWKPFSQKQIMSLEQSYQKHLTSQDRGWIKL
DSNFEVNFDKVPMEMRLPVRCPIKRDFLAGIQVEFKQSPHQRSLRAQLYWLQVDNQLPGT
MFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSQVLQFKYFMVLIQEMALKVDQGF
LGAVIALFTPTTAPEAERKRTKLIQQDIDALNTELMESSMTDMSILSFFEHFHISPVKLH
LSLSLGSGGEESDKEKQEMIAIHSVNLLLKSIGATLTDVDDLIFKLAYYEIRYQFYKRDQ
LMWSVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLTEGVEALFYEPFQGAVQGPEEFA
EGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRREEMGRQPKDFGDS
LARGGKGLLRGVFGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAVARPTGGIIDMASS
TFQGIQR
NT seq
9564 nt
NT seq
+upstream
nt +downstream
nt
atgtggtcatggagtaacataaaaaaacacaggcagttactcaagagttacaaaattgcc
tacaaaagcaagttaacacaaacgaaagtctcagaagaactacagaaacaaattcaggac
ttggagaagagtctcgatgtgtttaacataattttagtgagacaacaagcacaagttgag
gtcattcattctgggcagaagttaaggaaaaagtctactgaggcaggcgagaaacgtggc
tggtttagtgggttttggggaaagaaagaatctaagaagaaagatgaggactcattgatc
cctgaaaccatcgatgatctcatgactccagaggagaaagacaagctcttcactgccatt
ggctacagtgagagtacctacaacttggctttgcccaagcagtatgtggcccatatactg
actctgaagttggtgagcacctctattataataagagaaaacaagaatgttccagaaatc
ttgaggattcagataattggcttgggtacccaagtatcccagcgaccaggagcacaagca
cttaagatagaagcaaaattagaacactggtacgtcacaggcttgcgacagcaagacatt
gtgccatcactggtggcttccattggcgacacttcatcgtccttgctcaaaattgagttt
gaaaccaaccctgagaacagtcctgctgaccagactctgatcgttcagtcccagcctgtg
gaggtcatctatgacgctaaaactatcaatgctgtagttgaattctttcagtcaaataag
gggttggatcttgagcaaattacatcagccacattgatgaagctggaagaaattaaggag
agaacagctacaggacttacacatattattgagactcggaaaaccctcgacttaaggatc
aatctaaagccttcttatttaataattccacagacaggttttcaccatgaaaagtcaaat
cttctcattttagattttggtacttttcagctcaacagtaaagaccaaggtacacagaag
acaacaaattcatctctggaagaaataatagacaaggcatatgacaagtttgatgtggaa
ataaagagtgtacagttgctctttgcaaaagcagaggaaaactggaaaaagtgtagattc
caacatccatcaactatgcacatattgcaacccatggatattcatgttgagttggccaag
gcaatggtggagaaggatgttagaatggccagatttaaagtgtcaggaggactgcctttg
atgcatgtgaggatttctgaccagaagataaaagatacgctatgtttgattaatagtata
cccttgccccagaagtcatccacacagtctccagagagacaggtagcctcgattcctgtt
ctttcaggtgggacgaaaggtcttcttggcacttccctgttgctagatggaatggaatca
gattctgatgacgagtattttgatgctgaggatggagactcgcagactgtcagaaccgtg
aaagcctcggaactgaaaaaagcccctgaggttccaaacgaggagctggttaatcttctg
ctcaagtttgagattaaagaggtgattttggaactcactaagcaacagaaagaagaagag
acagttctagtatttaatgtcactcagttagggaccgaagcaacaatgaggacatttgac
ctgactgcagtgtcttatttgaggaaaatcagcttggattaccatgaaattaaaggatcc
aaaaagaagccccttcacttgattagctcttcagacaaacctggattagatcttttaaaa
gtggagtacattaaggttgataagaatggacctagttttcaaactacttttgaaaaaact
gaacaaaccattaaggtggccttttcatctttgaatctgatgctgcaaacacaagctctt
ctgtcttccctgaactacttgacaagcatcatcccatcagatactgagaacacaggtgct
gtcaaggaggcacaggctgcaactgagaaacagaagaactctcccctgcagaaagcaatg
gtgtcctctagagatagtgacattattggctttaggctgtttgccaagttgaatgcgttc
tgtgtcacagtctgtgatgagaagagcaatattgctgaaatcaagatacaaggccttgat
tcttccttttctcttcagtcaaaaaagcagtcactttttgccaggctggaaaacattatt
gtcacagatgttgaccccaaaacagttcataagaaagctgtatctatagtcggaaatgaa
gtttttcgttttaacctggatttgtatccagatgctactgaaggggattcctacactgac
atgtccaccgtggatggtgtggtggcattgcacgtcggctgtattcagatcgtctacctt
cataagttccttatgtcattgctgaacttcctgaacaatttccaggtggccaaagaggcg
ctgagtgccgccactgcccaggctgcggaaaaggctgccacgagcgtgaaagatctcgcc
cagaggagttttcgtgtttccatcaatattgatttgaaagctccagtcattgtcattccc
cagtcctccatctccaccaatgctgtcgtggtagaccttgggttaattagagttcacaat
cagttcagtctggtgtctggtgaggacgccgtaaatcctccagtaatcgacaagatggaa
gtgcagcttacgaagctgaaactctctaggacaacaattcagccaggcgtctcccatcct
gatattcagctgttgcacccaattaacttggagttttctgtaaatcggaatctggctgca
aattggtaccataagatgcctgttgtagaaattaaagggtgtcttgattcaatgaatgtt
agtctcaatcaagaggatcttaatcttctgtttagaatactggcagaaaatcttggtgag
gccactggagacttggataaagggaaacctagagtacaagagataggtggaacgaaagca
tgccgagaggtctccatgccacagggcgtacacaccacgcaggatgcgtcaccagccaga
gtggaagagaccagatccatagacatcattaatgtcctgttaaactttgaaattaaggag
gttgtggtgacgttgatgaagaaagcggaaaagaaaggcgcgcccttacatgaactgaag
atcctgcatcttgggttggaagcgaaagtaaaagcccacgacatgactgctgaagcttac
ctgagagaaattagcatgcggtgctttgattttcctgattctaaaggcgagcctctgtac
attgtcaactcctctaatgtgtctgatggaaccctcctgaaaatgctgttcactaaggca
gacagtgatggaccagagtttaaaactgttcatgataacaccaaacagaagctgaaggtt
tcgttttcgtctttgaacttggtgcttcatttggaagctttactttcccttatggatttt
ttgtcatctgctgtcccgtcctccgacccttcctcctctcagaaggaatctgagctgaag
ccgcttgtgggggaatccaaaagtcttgccatcaaagccgtgcccagcacttctgaaggt
gatgtgtttgatttgaagatcacagctgaattaaatgcctttaacatcttcgtttgtgat
cagaagagtaacatagcagatattaaaatacatggaatggatgcctctatttctgtgaag
ccaaaggagactgatgtgtttgccagactggagaacatcatagttatgaatgttgattca
ctgtccattcacaaaaaggctgtctctattttgggagatgaagtcttcaggttccagatg
actctgtacccagatgccacagaaggcgaggcctatggcgacatgtctaaagtggacggc
aaacttagtctcaaagtgggctgtattcagattgtctatgttcataaattcttcatgtct
cttttgagcttcctcaacaatttccaaactgccaaagaagccttgagcacagccacggtc
caggctgctgaaagagctgcgtccagcgtgaaggacctggcccagaagagcttccggctt
ctgatggacatcgatttgaaagcgcccgtcattactatcccccagtcttctgcgtcacct
aatgccgtcatagcagaccttggcttaatcagggtggagaacaaatttagcctggttcct
gtggagcacttctctcttcccccggtggccgataagatgagcatccagcttactcagctg
aaactctccagaactgttttacagtctgactcgcttcagcatgacattgaaatcttaaaa
ccagtgaacatgcttttgtctgttcagcggaatttgtcagcagcatggtacacagagatt
ccaggcatggagataaaaggaaaacttcagcctatgcaggttgctctcagtcaagatgac
ttgacagttttaatgaaaattttgctggaaaaccttggggaagcttcttcacagccaagc
cctacccagtctgcacaagaggctgtaagagtaaagagagatactcggagtgggcctgac
taccttaaagaacaagagttgacagactcaaagccccccatggatcagactgtcaccctt
cagtttgccttccacttcgactccctgtccatcatcctatataacaatgacagccaccag
gagtccagactttcatttcataacgacagtttccgtcttggtgagctcagactgcacctg
atggcctctgcagggaagatgttcaaggatgggtccatgaatgtcagccttaaactgaag
acgtgcactcttgatgatctccgagaaggcattgagagagcaacatccaggatgatcgac
agaaaggatgaccaagataacaacagttctatgattgatgtaagttatagacaagataaa
aatggaagcgagatcgatgctgttcttgataaactatacgtgtgtgccagtgtggagttt
ctgatgaccgtggccgatttcttcatcaaagctatgcctcagagtccagaaaacatagca
aaagaaatacagattccgtcaagacagactgccgtggggagagtcaagatggagaaagat
gagtctgtgaggccaaatatgaccttgaaggccatgctcacagacccggaagtggtgttc
gtggccaacctgaccaaggccgatgctcccgctctgacagcctcattccagtgtaacgtc
tccctgtcaacctccaaacttgagcagatgatggaagcttctgtgagagatctgaaagtg
ctcgcctgccccttcttgagagaaaggagagggaagagtgtcaccacggtgttacaaccc
tgctctttatttatggaaaagtgtacatgggcttcaggaaaacaaaacataaatatcatg
gttaaagagtttgtaattaagatctcgcctataatccttaatactgtgatgacaatcctg
gccgccatgtctccaaaggccaaagaagacgagtcgagggacactgctgaggagatgggc
aatctctgggccatcaagtccatcactgactataactcttggtttcttggtgtggacacg
gcgacagaagtgacagaaaatttcagagactttgaccatcccccagtagaggagaattgt
gtgatcgccgtggagtccgttcaagtcaccttagaatgtggcctcgggcaccgcaccgtg
cccctgttactggcagagtctaagttttctggaaatgttaaaaactggacttcgctgatg
gcggctgctgctgacatgaccctagaggttcactattataacgaaatccatgcagtctgg
gaaccactgattgaaagagtggaggggaaaacaccgtggagcttgaaacttaatgtgaag
aagaacccgatccaggataaaagtttgatgccgggggatgattttattcctgaaccacaa
atggcagttcatatttcttcaggagctacgatgaatatcacaatatccaaaagttgtctt
aatgttttcaacaatttagcaaaaggtttctcagagggagctgcttccactttcgactac
tctctaaaagacagggctccttttacagtcagaaatgccctaggtgttcccattaaggtg
cagcccaatcgtaacctcagggtgatgggttccctggagaagagtgacctttatgatgtg
ggtgctggtcagcagttggagctagaatatgccagcctggagccttcacgtcaagggaag
ctgtcggtcctgagtcggcaggagagttccttcttcacgttgaccttcgtaccacacggc
tatacagaagtgggcagtgtgcctgtggccaggcctggcaggcgattgtataatgtacgg
aatcccagtgccagccgttctgattctgtactggtgcagattgacgcaacagaagggaat
aaggtcatcactctccgctcgcctctgcagattaaaaaccacttctccatagcatttatc
atctacaaatttgtcaagaatgttaagctatttgagcgcattggaatagccagacctgag
gaggagttccatgtccctttggattcctacagatgtcagctgtacgttcagccggctgga
agcttagagcagcagtacactcagtccaccacgtacatttcctggaaggaagagcttcac
cgtagcaaggaggtcaggtgcatgctccagtgccctgcattggaagtcaacttcttaccg
ctcatcgtgaacacggtcgccctgcctgacgagctgagctacatcggtgcccacggggaa
gactgggacccagcctacgtgatccacctttaccctcctctcaccttgcggaaccttctc
ccgtattcgctaagatacttgcttgagggaactgcagaaacccacgagctggcagaaggc
aatgctgccgatgttctccactcgcgaatcagcggcgagatcatggagttagtcctggtc
aaatacctgggcaagaactggaacggacacttgcgcatttgcgacacactccccgagttc
ttcctcgtgtgcttttcctcggacacggccgaagtgatgacagtcgacttgtcagtgcat
gtcaggcgaattggctgccgcatggagctgtctgtctttagtccctattggctgatcaac
aaaacttctcgggttctccagtattgctctgaggagatacatgttaaacatccagccgat
ttcagggacatcgttttattctctttcaagaagaagaacatttttagcaaaaataaggta
cagttaaaaatttcgaccagtggctggtccagtgctttctcattggacaccgtgggaagt
tacgggtgtgtgaagtgtcctgccaccaatatggagtacctggttggagttagcatcaaa
atgagcagtttcaacctctcaaggatagtcactctgacccctttctgcaccgtcgccaac
aagtcctccttggagctggaagtgggagagattgcctcggatggctccataccgaccaac
aagtggcactatgtggcttcttcagagtgcattccattttggcctgaaaatttgtctggc
aaactttgtgtgagagtggtgggctatgaagggtcttccaagccattcttttacaaccga
caggacaatggcactttattgagtttagaagatttgaatggaggtgtcgtggtggatata
aacactgctgaacactcaactgtcataaccttctctgattaccacgagggatctgcacct
gccctgatcatgaaccatacacagtgggacgtcctcacgtataaacagagtgggtcacag
gaggaattagtattgctgccaaaagaaacgagactctttgcctgggcagatcccactggc
accaggaaactcacgtggagctatgcatcgaacgttggcgagcatgatctcttaaaggat
gagtgtggacagtttccatatgatgcaaacatccagatccactgggtgtccttccttgat
gggcgccagagggttcttcttttcacggacgatgttgctttggtttccaaagcactccag
gcagaagaaatggaacaggctgatcacgaagtcaccttgtctctccacagccttgggctc
tctctggttaacaatgaaaacaagcaggaagtctcatatgttggaatcaccagttcaggt
gttgtttgggagatgaagccgaaacagaagtggaaaccatttagtcagaagcagataatg
tccctggagcagtcctatcagaagcatctcacatcgcaagaccgtggctggattaagcta
gacagcaattttgaggtcaattttgacaaagttccgatggaaatgcgacttcccgtccgg
tgccctattaaacgggacttcttagcagggattcaggttgaatttaagcagtctcctcac
cagagaagcttaagggcccagttatactggctccaggttgacaatcagttaccaggcacc
atgttcccagtggtattccatcccgtggctcctcccaaatccattgctttagattcagag
cccaaacctttcatcgatgtgagcgtcatcacaagattcaatgagtacagccaagtctta
cagttcaagtattttatggttctcatccaggaaatggccttaaaagttgatcagggtttc
cttggagctgttattgccctgtttaccccaacaactgcccccgaagctgaaagaaaacgg
acaaagttaatccagcaagatatcgatgctctcaacacagagttaatggagtcttccatg
actgatatgtcgatcctgagtttcttcgaacatttccatatatctcctgttaagttgcat
ttgagtctgtctttgggttccggaggtgaagaatcagacaaagagaaacaggaaatgatt
gcaattcattctgtgaacctgctgttgaaaagcataggtgccaccctgactgacgtggat
gacctcatattcaaacttgcttactatgagatccgctatcagttttacaagagagatcag
ctcatgtggagtgtcgttagacactacagtgaacagttcctgaagcagatgtatgtgctt
gtgttgggcttggatgtgcttggaaacccgtttggactcattaggggcctgaccgaagga
gttgaagcactgttctatgagcccttccagggtgctgttcaaggccctgaagaatttgct
gaaggattagtgattggggtgagaagtctcttcggacacacagtaggtggtgctgcggga
gtcgtatctcgaatcacaggttctgttggcaaaggcctggcagcaattacaatggacaaa
gagtatcagcagaagagaagagaggagatgggtcgacagcctaaagattttggagacagt
ctggccagaggagggaagggcttactgcgtggagttttcggtggggtgactggaataata
acaaagcctgtggaaggtgccaagaaggagggcgctgctggcttctttaaaggaattgga
aaaggactcgtgggtgccgtagctcgtccaactggcggaatcatagatatggctagcagc
accttccaaggcattcagaggtaa
DBGET
integrated database retrieval system
