Peromyscus leucopus (white-footed mouse): 114690970
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Entry
114690970 CDS
T07241
Symbol
Xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03008
Ribosome biogenesis in eukaryotes
pleu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
114690970 (Xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
114690970 (Xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pleu03019
]
114690970 (Xrn1)
03009 Ribosome biogenesis [BR:
pleu03009
]
114690970 (Xrn1)
03016 Transfer RNA biogenesis [BR:
pleu03016
]
114690970 (Xrn1)
03036 Chromosome and associated proteins [BR:
pleu03036
]
114690970 (Xrn1)
Messenger RNA biogenesis [BR:
pleu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
114690970 (Xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
114690970 (Xrn1)
Ribosome biogenesis [BR:
pleu03009
]
Eukaryotic type
Pre-60S particles
RNases
114690970 (Xrn1)
Transfer RNA biogenesis [BR:
pleu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
114690970 (Xrn1)
Chromosome and associated proteins [BR:
pleu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
114690970 (Xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
114690970
NCBI-ProteinID:
XP_028721845
LinkDB
All DBs
Position
7:84387254..84504641
Genome browser
AA seq
1727 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSALKEKITFKYDIEKIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYIAILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEAKNCKEKRKSKGQENSLSWAALDKSEGEVVASKDNFEDET
EDDDLFETEFRQYKRTYYMTKMGVDVVSDEFLADQAACYVQAIQWILHYYYHGVQSWSWY
YPYHYAPFLSDIRNISALTIRFELGKPFKPFEQLLAVLPSASKNLLPTCYQHLMTSEDSP
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM
CWYDRETEFTYSSPWPEKFPAIERCCTRYKVISLDAWRVDINKNRITKVDQKALYFCGFP
TLKHIKHKFFLKKSGVQVFQQSSRGENMMLEISVNAESDELSIENIASSVLGKSVFVNWP
HLEEARVVAVSDGETKFYLEEPPGTQKVYLGKTAPPTKVIQLADKEQSNWTKEIQGISEQ
YLRRKGIIINETSAVVYAQLLTGRKYQISQNGEVHLEKQWSKQILPFVYQTIVKDIRAFD
SRFSNIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVVFSIPCEPNLDAL
IQNQHKYSIKYNPGYVLAGRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
KKNEEVPGYTKKVGNEWMYSSAAEQLLAEYIERAPELFSYIAKNSQEDVFYEDDIWPGEN
ENGAEKVQEIMTWLKGHPVSTLSRSSCDLHILDAAIVEKIEEEVEKCKQRKNNKKVRVTV
KPHLLYRPLEQQHGVVPDRDAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGASREADVLF
EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVNYCSA
NSSVSSGHLGGLNHSPQSLFVPTQVPTKGDDEFCNIWQSLQGSGKIQHFQTTVQEKGAVL
PQEISQVTQPHKSDFNDNSIKYQQRKHDPHRKLKEEYKSPKAECQTQKLSNKQTSGGSAK
CNIKLLKRNESPGASEAQKVVTGYPNVVDKPHSGIENFLASLNISKESDVQSPHRGEHPD
EEHLSPQSFAMKGTRMLKEILKIDSPDTADSKSDGKQFNKEVTASSSRRDEHGLLAHPEQ
NQKLACFMNKPHGTSEYQNSPSVDSVCWPSHIPPVSTSVAELARICSLVGMPQPDFSFLR
TTQTMTVCQVKLSNGLLVHGPQCHSESEAKERAALFALQQLGSFGMNYPLPPPIFPNYPP
AVPSGTVPPIFHQPTATMMPSSSPLFGSVPWRPAVPVAGKVFHPPPHPGTMPLAGGVPGG
VHNQFIPLQVTKKRVANRKNFENKEAQSSQITPLQTSKPGSSEATKIIPQESSSASLKSS
QAPQPVSSQVETASQGHGVSHQKSAPSSSRRKSRKLAVNFSVPKPSE
NT seq
5184 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttaccgatggatctcggagcggtatccctgcctcagcgaagtg
gtgaaggagcatcagattcctgaatttgataacttgtacctggatatgaatggaattata
catcaatgttcccatcctaatgatgatgatgttcacttcagaatttcagatgacaaaatc
tttactgacatttttcactacttagaggtgttgtttcgaattattaaacctaggaaagtg
ttctttatggctgttgatggtgtggctcctcgagcaaaaatgaaccagcagcgtgggagg
cgttttaggtcagccaaggaggcagaagacaaaattaaaaaagcaatagaaaagggagaa
acacttcctacagaagccagatttgattctaactgtattacgccagggactgaattcatg
gccaggttgcatgaacatctgaagtattttgtaaatatgaaaatttccactgacaaatca
tggcaaggcgttaccatctacttctcaggccatgagactcctggagaaggagagcataaa
atcatggaatttatcagatccgagaaagcaaagccagatcatgatccaaacaccagacat
tgtctttatggcttagatgctgacttgatcatgcttggattaacaagtcacgaggcacat
ttttctctcttaagagaagaagttcggtttggtggaaaaaaaacacaaagggtatgtgca
ccagaagaaacgacgtttcacctcctacacttgtctttaatgagagagtatattgattat
gaattttcagcattaaaagaaaagatcacatttaaatatgatattgaaaaaattatagat
gattggattttgatgggatttcttgttggcaatgattttatccctcatctacctcattta
catattaatcatgatgcgctgcctcttctttatggaacatatattgccatcctgccagaa
cttggaggttatattaatgaaagtggacatctcaacttaccacgatttgagaaatacctt
gtgaaactgtcagattttgatcgagagcacttcagtgaagtttttgttgacctcaaatgg
tttgaaagcaaagttggtaacaagtatctcaatgaagcagcaggtgtggcagccgaagaa
gccaagaactgcaaggaaaagagaaaatcaaagggccaggaaaattccttaagttgggct
gctttagacaaaagtgaaggcgaagtagtggcttccaaagataattttgaagatgagacg
gaagatgatgatctgtttgaaactgaatttagacaatataaaagaacatactatatgacg
aagatgggagtcgatgtagtatctgatgagtttctggctgatcaagctgcttgttatgtt
caagctatacaatggatcttacactattactatcatggagtccaatcctggagctggtat
tatccctaccattatgcacccttcctgtctgacatccgcaacatcagcgcgcttacaatc
cgctttgaactggggaagcccttcaagccgtttgagcagcttcttgccgtcctgccatca
gccagcaagaatttgcttcctacgtgctaccagcatttgatgaccagcgaggactcacca
attatagagtattatccacctgattttaaaactgacctaaatgggaaacaacaggaatgg
gaagctgtggtattaataccttttattgatgagaagcgattgttggaagccatggagaca
tgtaatcactccctcaaaaaggaagagaggaaaagaaaccagcacagtgaatgtctaatg
tgctggtatgatagagaaacagagttcacctactcctctccatggccagaaaagttccct
gctatagaacggtgctgtacaaggtataaagtaatatcactagatgcttggcgtgtagac
ataaacaagaacagaataaccaaggttgaccagaaggcattatatttctgtggattcccg
actttgaaacacatcaaacataaattttttttgaagaaaagtggtgttcaagtattccag
cagagtagtcgtggtgagaacatgatgttggaaatctcagtgaatgcagaatcagatgaa
cttagtatagaaaacattgcctcgtcggtgcttggaaagtcggtctttgttaactggccc
catctagaagaagctagagttgtggccgtatcagatggtgaaaccaagttttacttagaa
gaacctccaggaacacagaaggtttatttggggaaaactgctccaccaactaaagtcatc
caacttgcagataaagaacagtcgaactggactaaagaaatacaaggaatttcagaacaa
tacctaagaagaaagggaataataataaatgaaacatctgctgttgtatatgctcagttg
ctcacgggacgtaaatatcaaatcagtcagaatggtgaagttcatctggaaaaacagtgg
tcaaaacaaattcttccttttgtttatcaaactattgttaaggacatccgagcttttgac
tctcgtttctccaatatcaaaacattggatgatttgtttccgctgagaagtatggtcttt
atgctgggaactccttattatggctgcactggagaagttcaggattcaggtgacgtgatt
acagaaggtaggattcgtgtggttttcagcattccatgtgaaccaaatcttgatgcttta
atacagaaccagcataaatactctataaagtacaacccaggatatgtgttggccggtcga
cttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagagga
tctaggagaaaccctcatggagaccataaagcaaatgtgggtttaaatctcaaattcaac
aagaagaatgaagaagtccctggatatacaaagaaagttgggaatgagtggatgtactca
tcagcagcagagcagcttctcgcagagtacatagagagagcaccggaactgtttagttat
atagccaaaaacagccaagaagatgtgttctatgaagatgacatctggcctggagaaaat
gagaacggtgctgaaaaagttcaagaaattatgacttggctcaaaggacaccctgtcagc
acactgtcccgttcttcttgtgacttacacattctggatgcagccattgttgaaaaaatt
gaggaagaagttgagaagtgcaagcaaagaaagaataataagaaagtacgagtaacggtg
aagccccatctgctgtacagaccattagagcagcaacatggggtcgtccctgatcgggat
gctgagttccgtctgtttgatcgcgttgtgaacgtcagagagaacttctcagtaccagtt
ggcctccgaggcaccatcattggaattaaaggggctagtagagaagctgatgtactattt
gaagtattgtttgatgaggaatttcctggaggcttaacaataaggtgctcaccaggtagg
ggttaccgactgccaacaagtgccttggtgaacctttctcatgggagtcgatctgaaact
ggaaatcagaagttgacagccattgtgaaaccacaaccagctgtgaattattgcagcgca
aattcatcagtttcatctgggcacctgggaggactcaaccattctcctcagtcacttttt
gtccccactcaagtacctacaaaaggtgatgatgaattttgcaacatttggcaatctcta
cagggatctggaaaaattcaacactttcagacaacggtacaagaaaagggtgcagttcta
cctcaagaaataagtcaagtaactcaaccacataaatctgactttaatgacaacagtatt
aaatatcagcaaagaaaacatgaccctcaccggaaacttaaggaagaatataagagtcct
aaagctgagtgtcagacacaaaaactgtccaataaacagacttctggaggatctgccaaa
tgtaatattaaactattgaagagaaatgaaagtccaggagcttcagaagcccagaaggtt
gtgactggttacccaaatgttgttgataagcctcactctggaattgagaactttttagca
tctttgaatatctctaaagaaagtgatgtacagtcacctcaccgtggagagcacccagat
gaggagcatctgtcaccacagtcgtttgctatgaaaggaacacggatgcttaaagaaatt
ctaaagattgatagccctgacacagcagacagtaagagtgatgggaaacaatttaataaa
gaagtcactgcttcttccagtagaagagatgagcatggactgttagcacatcctgaacaa
aatcagaagctggcatgctttatgaacaagcctcatggtactagtgaataccaaaatagt
ccatctgtggatagtgtgtgttggcctagtcatatccctcctgtgtccacatcagtagct
gaacttgctcgaatttgttcccttgttggaatgccacaaccagatttctcctttctgagg
acaacacagacaatgacagtttgtcaggtgaaattgtctaatggtttactggtacatggg
ccacagtgccactctgaaagtgaagccaaggagagagctgcactttttgctttacaacaa
ctgggctcctttggtatgaattatcctttgcctccaccaatatttccaaattatcctcct
gctgtaccatctggaacggtccctcccatttttcaccagcctactgctactatgatgcct
tcgtcgtctcctctcttcggctcagtgccatggagaccagcagtgccagttgctgggaag
gtcttccatcctcctccacatcccgggaccatgcccttggctggaggagtgccaggcgga
gtgcacaatcagttcatacctctgcaggttacgaaaaaaagggttgcaaacagaaagaat
tttgagaataaggaggcccagagttctcaaatcacaccgcttcagactagcaagccaggg
tcttctgaagccaccaaaataattccacaagaaagctcatcagcctctttgaagtcctct
caagctcctcagcctgtgtcttctcaagtcgaaactgcctcccaaggccatggtgtgtcc
caccagaaatcagccccgagctcctcgaggaggaagtcaaggaaactggctgtcaacttt
agtgttcctaaaccttctgaataa
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integrated database retrieval system
