Peromyscus leucopus (white-footed mouse): 114691322
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Entry
114691322 CDS
T07241
Symbol
Chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pleu03021
]
114691322 (Chd1)
03036 Chromosome and associated proteins [BR:
pleu03036
]
114691322 (Chd1)
Transcription machinery [BR:
pleu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
114691322 (Chd1)
Chromosome and associated proteins [BR:
pleu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
114691322 (Chd1)
SLIK complex
114691322 (Chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Chromo
Helicase_C
ResIII
HDA2-3
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
114691322
NCBI-ProteinID:
XP_028722404
LinkDB
All DBs
Position
8a:56746456..56827184
Genome browser
AA seq
1705 aa
AA seq
DB search
MNGHSDEESVRNGSGESSQSEDDSGSASGSGSGSSSGSSSGGSSSQSGSSDSDSGSDSGS
QSESESDTSRDNKVHGKPPKVDGAEFWKSNPSILAVQRSAMLNKKQPQQPQQQHPASSNS
GSEEDSSSSEDSDDSSSEVKRKKHNDEDWQMSGSGSPSQSGSDSESEEERDKSSCDETES
DYEPKNKVKSRKPQSRSKSKNGKKILGQKKRQIDSSEDEDDEDYDNDKRSSRRQATVNVS
YKEDEDMKTDSDDLLEVCGEDVPQPEEEEFETIERFMDCRVGRRGATGATTTIYAVEADG
DPNAGFEKNKEPGDIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKR
WLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGLPDYYCKWQGLPYSEC
SWEDGALISKKFQTCIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGLEL
RDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLST
LTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKA
FLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM
PEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSAL
QKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQ
HLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGE
LRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI
GQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFN
KEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKV
ANFSNMDEDDIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYMLPRMRNCAKQIS
FNGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKF
GGPLERLDAIARDAELVDKSETDLRRLGELVHNGCVKALKDSSSGTERTGGRLGKVKGPT
FRISGVQVNAKLVIAHEDELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGREDDSNL
LIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSRDLAKKE
AQRLSGAGGSKRRKTRTKKNKTMKSIKIKEEIKSDSSPLPSEKSDEDDDKLNESKPESKD
RSKKSVVSDAPVHITASGEPVPIAEESEELDQKTFSICKERMRPVKAALKQLDRPEKGLS
EREQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYKH
AIKKRQESQQNSDQNSNVTTHVIRNPDVERLKENTNHDDSSRDSYSSDRHLSQYHDHHKD
RHQGESRKRPYSSFSNGKDHREWDHYKQDSRYYSDREKHRKLDDHRSRDHRSSLEGSLKD
RCHSDHRPHSDHRLHSDHRSSSEYTHHKSSRDYRFLSDWQMDHRAASTGPRSPLDQRSPY
GSRSPFEHSAEHKSTPEHTWSSRKT
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atgaatggacacagtgatgaagaaagtgttagaaatggcagtggagaatcaagccagtca
gaagatgattctgggtcagcatcaggctctggatctggctcaagttccggcagcagcagt
ggtggaagtagcagccagtctgggagcagcgactctgattctggttctgactcaggaagt
caatcagagtctgaatcagatacatcccgagacaacaaagtccacggaaaaccaccaaaa
gttgatggagccgagttttggaaatctaaccctagtattctggctgttcagagatctgca
atgcttaataagaagcagccacagcagccacagcagcagcatccagcttcatctaacagt
ggatcagaagaggattcctctagcagcgaagactcagatgactcctctagtgaggtcaag
aggaaaaagcataacgatgaagattggcaaatgtctgggtcaggatctccatctcagtct
ggttcagattcagaatctgaagaagagagagataaaagtagctgtgatgagacagaatct
gactatgagccaaaaaacaaagtcaaaagcagaaaacctcaaagtagatctaagtcaaaa
aatgggaaaaaaattcttggacagaaaaagaggcagattgactcatctgaagatgaggat
gatgaagattatgataatgataagcgaagctctcgtcgccaagccacagtcaatgtgagc
tacaaggaggacgaggacatgaaaacagactccgatgacctcctggaagtctgtggagag
gatgttcctcaacctgaggaggaggaatttgaaacaatagaaaggtttatggattgcaga
gttgggagaagaggagctactggtgctactacaaccatttatgctgttgaagcagatggt
gacccaaatgcaggattcgaaaaaaacaaagagccaggagacatacagtatttaatcaaa
tggaaaggatggtcacatatccacaacacttgggagacagaagaaactctcaagcagcag
aatgttagagggatgaaaaaattggataattataagaaaaaagatcaggaaacaaaacga
tggctgaaaaatgcttctccagaagatgtggaatattataattgtcagcaagaacttaca
gatgatctacacaaacagtatcagatagtggagcgtataattgctcattccaatcaaaaa
tcagcagctggtcttcctgattattattgcaaatggcaggggcttccatactcagagtgc
agctgggaggatggagctctcatttccaaaaagtttcagacatgcatcgatgaatatttt
agcaggaatcagtcaaaaacgactccttttaaagattgcaaagtattgaaacaaagacca
agatttgtagctctgaagaagcaaccatcctacattggaggacatgagggtttagagttg
agagactatcagttgaatggtttaaattggcttgctcactcttggtgcaaaggaaatagt
tgcatacttgctgatgaaatgggccttggaaaaacaatacagacgatctcgtttctcaac
tatttgtttcatgaacatcaattgtatggaccttttctattagttgtaccactttccact
ctcacttcctggcaaagggagattcagacatgggcatctcagatgaatgcggtggtttat
ttaggtgacattaacagcagaaacatgataagaactcatgaatggatgcatccccagacc
aaacggttaaaatttaatatacttttaacaacttatgaaatattattgaaggataaggca
ttccttggtggtctaaactgggcatttataggtgttgatgaagcacatcgattaaaaaat
gatgattcccttctgtataaaactttaattgattttaaatctaatcatcgtctccttatc
actggaactcctctacaaaactccctgaaagagctctggtcattgctacatttcattatg
ccagaaaagttctcttcatgggaagattttgaagaagaacatggcaaaggcagagaatat
ggttatgcaagcctccacaaggagcttgagccatttctgttacgcagagttaagaaagat
gtggaaaaatctcttcctgccaaagttgagcagattttaagaatggaaatgagtgcttta
cagaaacaatattacaaatggattttaactaggaattacaaagccctcagcaaaggttcc
aagggcagtacctcaggctttttgaacattatgatggagctaaagaaatgttgtaaccat
tgctacctcattaaaccaccagataataatgaattctataataaacaggaggccttacaa
cacttaatccgtagtagcggaaaattaattcttctagacaagctgttaattcgcctaaga
gaaagaggcaaccgagtactcattttttctcagatggtgcggatgttagatatacttgca
gaatatttgaagtatcgtcaattcccctttcaaagattggatggatcaataaaaggggag
ctgaggaaacaagctctagatcattttaatgctgagggatcagaggatttctgctttttg
ctttctacaagagctgggggtttaggcattaacctagcctctgctgacactgttgttata
tttgattctgattggaatccgcaaaatgatcttcaggctcaagcaagagctcatcgaatt
ggacagaagaaacaggtgaatatatatcgtctagttacaaagggatcagttgaagaagat
attcttgaaagggccaaaaagaaaatggttttagatcatcttgtgattcaaaggatggac
accactgggaagacagtgctacacacgggctctgctccatccagttctacccccttcaat
aaagaggagttatcagccattttaaaatttggtgctgaggagctttttaaggagcctgaa
ggagaagagcaagagccccaggaaatggatatagatgaaatcttaaagagagctgaaact
catgaaaacgagccaggccccctgactgtaggagatgagctgctttcccagttcaaggtt
gccaacttttcaaatatggatgaagatgacattgaattagaacctgaaagaaattcaaag
aactgggaggaaatcattccagaagatcaaagaagacggttagaggaggaagaaagacag
aaggaacttgaagaaatttatatgctcccaagaatgagaaactgtgcaaagcagataagt
ttcaatggaagtgaagggaggcggagcagaagcagacggtactctgggtctgatagtgat
tcaatctcggaaaggaaacgaccgaagaaacgtgggagaccacgcaccatccctcgggag
aatattaaaggatttagtgatgcagaaattaggcggtttatcaagagctataagaaattt
ggtggtcctctggaaagattagatgcaattgctcgagatgctgaattggttgacaagtca
gaaacagacctcagaagactaggagaattggtgcataatggttgtgttaaagctttaaag
gacagttcttccggaacagagcgaacaggtggcagacttggaaaagtgaaggggccaaca
ttccgaatatcaggagtacaagtgaatgcgaagctagtcattgctcatgaagacgaattg
atacctttgcataaatccattccttcggatccagaggaaaggaagcagtatacaatccca
tgccacacaaaggcagctcactttgatatagactggggcagagaagatgattccaatttg
ttaattggcatctatgagtatggctatggaagctgggaaatgattaaaatggatcccgac
ctcagtttaacacacaagattcttccagatgatcctgataaaaagccacaagcaaaacag
ttacagacacgtgcagactacctcatcaaattacttagcagagatcttgcaaaaaaagag
gctcagagactttctggtgcgggaggttcaaagaggagaaaaacaagaaccaaaaagaat
aaaacaatgaagtccataaaaataaaagaagaaataaagagtgactcatctcctctgcct
tcagagaagtctgacgaagatgatgataaattgaatgaatccaaacctgaaagtaaagac
cggtctaaaaagtctgtggtgtcagatgctccagttcatatcactgccagtggagagcca
gttcccatagctgaggagtctgaggagctggatcagaagacattcagtatttgtaaagaa
agaatgaggccagtgaaagcagctttgaaacaacttgataggcctgagaaaggcctttcg
gaaagagagcaactagaacatactagacagtgtttgatcaagatcggagaccatatcaca
gaatgtctgaaggagtattccaatcctgagcaaattaagcagtggagaaaaaacctgtgg
atttttgtatctaagtttactgagtttgatgcaagaaaattgcataaattgtataagcat
gctattaaaaaacgacaagaatctcagcaaaacagtgaccagaatagcaacgttactact
catgtgattagaaatccagatgtggaaaggctaaaagagaacacaaaccatgatgatagc
agcagggacagttactcttctgacagacacttatcccagtaccatgatcatcataaagac
cgccaccagggagagtccaggaaaagaccttactcttcattcagcaatggcaaagaccat
cgtgaatgggatcactacaagcaagacagcaggtactacagtgacagagagaaacacaga
aaactggacgaccacaggagtcgcgatcacaggtcaagtttggaaggaagcttgaaggac
aggtgtcattctgaccatcgacctcactcggaccatcgactgcattcagaccatcgatca
agttctgagtatacacatcataaatcttccagggattatcggtttctctctgattggcaa
atggaccaccgagctgccagcactggccctcggtcacctttagatcagaggtctccttat
ggttccaggtctccatttgaacattcagctgaacacaaaagtacacctgagcacacctgg
agtagccggaaaacataa
DBGET
integrated database retrieval system
