Peromyscus leucopus (white-footed mouse): 114691427
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Entry
114691427 CDS
T07241
Symbol
Rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03030
DNA replication
pleu03420
Nucleotide excision repair
pleu03430
Mismatch repair
pleu03440
Homologous recombination
pleu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
114691427 (Rpa1)
03420 Nucleotide excision repair
114691427 (Rpa1)
03430 Mismatch repair
114691427 (Rpa1)
03440 Homologous recombination
114691427 (Rpa1)
03460 Fanconi anemia pathway
114691427 (Rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pleu03000
]
114691427 (Rpa1)
03032 DNA replication proteins [BR:
pleu03032
]
114691427 (Rpa1)
03400 DNA repair and recombination proteins [BR:
pleu03400
]
114691427 (Rpa1)
Transcription factors [BR:
pleu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
114691427 (Rpa1)
DNA replication proteins [BR:
pleu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
114691427 (Rpa1)
DNA repair and recombination proteins [BR:
pleu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
114691427 (Rpa1)
MMR (mismatch excision repair)
114691427 (Rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
114691427 (Rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
114691427
NCBI-ProteinID:
XP_028722567
LinkDB
All DBs
Position
8b:complement(58539122..58590978)
Genome browser
AA seq
614 aa
AA seq
DB search
MVGHLSEGAIAAIMQQGDTSIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLAT
QLNPLVEGQKLASNCVCQVNRFIVNTLKDGRRVVILMDVEVVKSAEEVGIKIGNPVPYNE
GHGQQQVAPSPASAATPPASKPQPQNGSLGMGSTVAKAYGASKPFGKPAGTGLLQPSGGT
QSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNE
QVDKFFPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVLPCEDGHHLPTVQF
DFTGIGDLESKSKDSLVDILGICKSYEESTKITVKSTNREVAKRNIYLMDMSGKVVTATL
WGEDADKFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQ
ALDGVSISDLKSGGAGGSNTNWKTLYEAKSENLGQGDKADYFSTVATVVFLRKENCMYQA
CPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNIADFQENQWVTCFQESAEAIL
GQNTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPIDYR
DYAKRLIMNIKRNM
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggtgggacacctgagcgagggggccattgcggccataatgcaacagggagatacatcc
ataaagcccatccttcaagtcattaacattcgtcccattactacagggaatagtccaccc
cggtatcgactgcttatgagtgatggattgaacacgctgtcctctttcatgttggccaca
cagctgaaccctcttgtcgagggccagaaactggccagcaactgtgtctgccaggtcaac
cgattcatcgtgaacaccctgaaagacggaaggagagtagttattttgatggatgtggaa
gttgtaaaatcagctgaagaagttggaataaagattgggaatccggtgccctataacgaa
ggacacgggcagcaacaagtagccccttcgccagcctcagcagccacaccaccagccagc
aagccccagccacagaatgggagcttgggaatgggttccactgtagctaaggcttatggt
gcctcaaagccatttggaaaacctgctggaactggcctgctacagccttcaggagggaca
cagtccaaagtggtgcccatcgccagcctcaccccttatcaatccaagtggactatttgt
gcccgtgtcaccaacaaaagtcagatccgtacctggagcaattcccgaggggaagggaag
cttttctctatagaactcgtagatgaaagtggtgaaatcagagcgactgctttcaatgag
caggtggacaagttctttcccctcatcgaagtgaacaaggtgtattatttctcgaaaggc
accctgaagatcgctaacaagcagttctcggctgttaaaaacgactatgagatgaccttc
aataacgagacttctgtccttccctgtgaagatggccatcacttacccaccgttcagttt
gatttcacagggatcggtgacctagagagcaagtctaaagactcacttgtagacatactc
gggatctgcaagagctatgaggagtccactaaaatcaccgtgaagtctaccaacagagaa
gtcgctaagagaaacatctatctgatggacatgtcagggaaagtggtgactgcaactctc
tggggagaagacgccgacaagtttgacggttccaggcagcctgtgatggctatcaaagga
gcccgggtctctgacttcggtggacggagcctctctgtcctgtcgtctagcactatcatt
gtgaatcctgacatcccagaggcctataagcttcgtggatggtttgactcagaaggacaa
gccttggacggtgtttccatctctgacctcaagagtggaggcgccggagggagcaatacc
aactggaagaccttgtatgaggctaaatcggagaacctgggccagggtgataaggcggac
tacttcagcaccgtggcgacggtggtgtttcttcgaaaagagaactgtatgtaccaggcc
tgcccaacccaggactgcaataagaaggtgattgaccagcagaatgggttgtaccgctgt
gagaagtgtgaccgggagttccccaacttcaaataccgcatgatcttgtcggtgaacatt
gcagattttcaagagaatcagtgggtgacgtgtttccaggagtctgcggaggctatcctt
ggacagaacactgcctacctgggggagctgaaagagaagaacgagcaggcgtttgaagag
gttttccagaatgccaacttccgatcatttacattcagaatcagggtcaagctggagacc
tacaatgatgaatctcgaattaaggccactgtgatggacgtgaagcccattgactacaga
gattatgccaaaaggctgatcatgaacatcaagaggaacatgtga
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