Peromyscus leucopus (white-footed mouse): 114691556
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Entry
114691556 CDS
T07241
Symbol
Lig3
Name
(RefSeq) DNA ligase 3 isoform X3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
114691556 (Lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pleu03400
]
114691556 (Lig3)
Enzymes [BR:
pleu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
114691556 (Lig3)
DNA repair and recombination proteins [BR:
pleu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
114691556 (Lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Synaptonemal_3
Motif
Other DBs
NCBI-GeneID:
114691556
NCBI-ProteinID:
XP_028722817
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All DBs
Position
8b:66267904..66292049
Genome browser
AA seq
1015 aa
AA seq
DB search
MTLAFKILFPRNLGALGRKELCLFLEQNHWPVIRQFSQWSETDLLRGCCLLQRRKPVLSF
RGGHLRPRATHLVFFPGSHVGLCTGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRI
GKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQINQ
HIADLSSKAAGTPKKKTAVQAKLTTTGQVTSPVKGASFVTSTNPRKFSGFSAAKPNNSEQ
TPSSPAPKTSLSARKCDPQHKDCLLREFRKLCAMVAENPSYNTKTQIIQDFLQKGSAGDG
FRGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDEMARDLEQGDVSETIRVFF
EQSKSFPPAAKSLLTIQEVDAFLLHLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKH
DLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNEQEVEKDPGQRRALSVQASLM
TPVQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHKV
AHFKDYIPRAFPGGQSMILDSEVLLIDNNTGKPLPFGTLGVHKKAAFQDANVCLFVFDCI
YFNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTKASDLADMINRVIREGLEGLV
LKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDP
DSQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKK
AAVWEITGAEFSKAEAHTADGISIRFPRCTRIRNDKDWKSATNLPQLKELYQLSKEKADF
TVVAGDEGSSTTGGSNGENEGTAGSALPHKAPKVPPSKSSASGKKTEQKLNDPTSRGGNR
VIPKPSPMKSGDKPAVKSSPVKVGVKRKAADETQCPTKVLLDVFTGVRLYLPPSTPDFKQ
LKRYFVAFDGDLVQEFDMASATHVLGNRDNNTEAQLVSPEWIWACIRKRRLITPC
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgactttggctttcaagatcctcttcccaagaaatcttggtgcccttggcagaaaagaa
ctgtgcctgttcctagaacagaatcactggcctgtcataagacagttcagccagtggtcg
gaaacagatctccttcgtgggtgctgcctcctccagagaagaaagcctgtcctatccttc
cggggaggtcatctaagaccgcgtgccacccaccttgttttcttcccagggtcgcatgtg
ggactctgtactggcccctgtgagatggcggagcaacggttctgtgtggactatgccaag
cggggcacagctggctgcaagaaatgcaaggagaagattgtaaagggcgtatgccgcatt
ggcaaagtggtgcccaatcccttctcagagtctgggggcgatatgaaagagtggtaccat
attaagtgcatgtttgagaagctggagcgggcacgggctaccacaaaaaaaatcgaagac
ctcacagagctggaaggctgggaagagctggaagataatgaaaaggagcagataaaccag
cacattgcagacctgtcttctaaggcggctggcacaccaaagaagaagaccgctgtccag
gccaagctgacaaccactggccaggtgacatccccagtgaaaggtgcctcgtttgtcacc
agtaccaatccccggaaattttctggattttcagcagccaaacccaacaactctgagcaa
accccctcaagccctgcccctaagacaagtctgtctgcacgtaaatgtgaccctcagcac
aaagattgtctacttcgagagttccggaagctgtgtgccatggtagctgaaaatcctagc
tacaatacaaagacccagatcatccaggacttcttgcagaaaggctctgcaggagatggc
ttccgcggtgatgtgtacctaacagtgaagctgctgctgccgggagtcattaagagtgtt
tacaacttgaacgataagcagattgtgaaactttttagccgcatttttaactgcaaccca
gatgagatggctcgggatctagaacagggtgacgtgtcagagacgatcagagtcttcttt
gagcagagcaagtctttccccccagctgccaagagtctcctcaccatccaggaagtggat
gcatttctcctgcacctctccaagctcaccaaagaggatgagcagcagcaggccctgcag
gacattgcctccaggtgtacagccaatgaccttaagtgcatcatccggctgatcaaacat
gatctgaagatgaactcgggtgcaaaacatgtgctagatgcccttgaccccaatgcttat
gaagccttcaaagcctcacgcaacctgcaggatgtggtggagcgggtccttcacaatgag
caggaggtggagaaggacccaggccagcgacgggctctgagcgtccaggcctcactgatg
actcctgtgcagcccatgctggctgaggcctgcaagtccatcgagtatgcaatgaagaag
tgtcccaatggcatgttctctgagatcaagtacgacggtgagcgagtccaggtgcataag
aagggggaccacttcagctacttcagccgcagtctcaagcctgtcctgcctcacaaggtg
gcccactttaaggactacatccctagagcttttcctggcggtcagagcatgatcttggac
tccgaggtgctcctgattgacaacaacacaggcaaaccactgccctttgggactctggga
gtgcacaagaaagctgccttccaggatgctaatgtctgcttgtttgtttttgattgtatc
tactttaatgatgtcagcttgatggataggccactttgtgagcgacggaagtttcttcat
gacaacatggttgaaatccgtaaccggatcatgttctcagaaatgaagcaagtcacaaaa
gcctcagacctggctgacatgataaaccgagtgatccgagagggcttagaagggctggtg
ctgaaggatgtgaagggtacatacgagcctgggaagcggcactggctgaaagttaagaaa
gattatttgaacgagggggccatggctgatacagctgatctggtggttcttggggccttc
tatgggcaagggagcaaaggtggcatgatgtctatcttcctcatgggctgctatgaccct
gacagccagaagtggtgcactgtcaccaaatgtgctggaggccatgatgatgccacactt
gcccgactgcagaaggagctagatatggtgaagatcagcaaggatcccagcaagataccc
agttggctgaagatcaacaaaatctactatcctgactttattgtcccagacccaaagaaa
gctgctgtgtgggagatcacaggggcagaattctccaaagctgaggctcacactgctgat
gggatctccatccgatttcctcgctgcacccgaatccggaacgacaaggactggaaatct
gccactaacctcccccaactcaaggaactgtaccagctgtccaaagaaaaggcagacttc
acggtagtggctggagatgaggggagttccactactggaggtagcaatggtgagaacgag
ggcactgctggatctgctctaccccacaaggcccccaaggtacctcccagtaagtcctct
gccagtggcaagaaaaccgaacagaagctgaatgaccccactagcagaggtggcaacagg
gtgattccaaagccttcccccatgaaatcaggagacaagccagccgtgaagtcttctcca
gtgaaagtgggggtaaagaggaaagctgctgatgagacccaatgcccaacaaaggtgctg
ttggatgtcttcactggggtgcggctctacttgccaccttccacaccagacttcaaacag
ctcaaacgctactttgtggcattcgacggggacctggtacaggaatttgacatggcctca
gccacacatgtgctgggtaacagggacaacaacactgaggctcagctggtctctccagag
tggatttgggcatgtatccggaaacggaggctgataactccctgctag
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