Peromyscus leucopus (white-footed mouse): 114692000
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Entry
114692000 CDS
T07241
Symbol
Ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pleu03041
]
114692000 (Ddx1)
03016 Transfer RNA biogenesis [BR:
pleu03016
]
114692000 (Ddx1)
Enzymes [BR:
pleu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114692000 (Ddx1)
Spliceosome [BR:
pleu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
114692000 (Ddx1)
Transfer RNA biogenesis [BR:
pleu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
114692000 (Ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
SPRY
Helicase_C
ResIII
DUF5766
CMS1
Motif
Other DBs
NCBI-GeneID:
114692000
NCBI-ProteinID:
XP_028723440
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All DBs
Position
22:complement(45433556..45462207)
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATKGLLKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPAHMKNQALFPACVLKNAELKF
NFGEEEFKFPPKDGFVALSKAPDNYVVKSQQTGSAQVSQTKFLPNAPKALIVEPSRELAE
QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLI
LSQVRFLVLDEADGLLSQGYSDFINRMHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDKLWERLGKNHIRTDDVHAKDNTRPGAN
SAEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFVQQGGGPDKKGHQF
SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVATEKEKVWYHVCSNRGKGCYNTRLKEDGGCTIWYNEMQLLS
EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGNYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggccttctccgagatgggtgtcatgcctgagattgcacaagcggtggaagagatg
gattggcttctaccaactgatatccaggcagaatctatcccattgatcctaggaggaggt
gacgttcttatggcagcagaaacaggaagtggaaaaactggtgcgtttagtattccagtt
atccagatcgtgtatgagaccctgaaggaccaacaggaaggaaagaaggggaaaacaacc
attaaaactggtgcttcggtgctcaacaagtggcagatgaacccatatgacagagggtct
gcttttgcaattgggtcggacggcctgtgttgtcagagcagagaagtgaaggaatggcat
gggtgcagagcgaccaaaggcttgctgaaagggaaacactactatgaggtatcctgtcat
gaccaggggctgtgcagagttggctggtctaccatgcaggcctccttagacctcggtact
gacaagtttggatttggcttcggtggaacaggaaagaaatcccataataaacagtttgat
aattacggagaggaattcaccatgcatgataccattggatgctacttagatattgataaa
gggcatgtgaaattctccaagaatggaaaagatcttggtctggcatttgaaataccagca
catatgaaaaaccaagcactcttccctgcctgtgttctgaagaatgctgaattgaaattt
aacttcggtgaagaagaatttaagtttccaccaaaagatggttttgttgctctttccaag
gccccagataactacgtcgtcaagtcacagcaaacaggtagtgcacaggtgtcccaaaca
aaatttctccctaatgctccaaaagctctcattgtggaaccttcgagggagttagctgag
caaaccttgaacaacgtcaagcagtttaagaagtatattgataaccctaagttacgggag
cttctcataattggaggtgttgcagctcgggatcagctctctgttttggagaatggggtt
gatattgtcgtcggtactccaggaagactagatgatttggtatcaactggaaagctcatc
ttgtctcaagtcagattcttggttctggatgaagcagatgggcttctatcccaaggttat
tctgactttattaataggatgcacagtcagattcctcagattacttctgatggaaaaaga
cttcaggtgattgtttgctctgccactctgcattctttcgatgtaaagaaactgtctgag
aagataatgcattttcccacatgggttgatttgaaaggagaagactctgttccagatact
gtgcaccatgtcgtagtccctgtcaatccgaaaactgataagctctgggaaaggctgggg
aagaatcacattcgaactgatgatgtacacgcaaaagataacacgagacctggtgctaac
agtgcagagatgtggtctgaagctattaaaatccttaagggggagtatgctgtccgagca
atcaaggaacacaagatggatcaagcgattatcttctgtagaactaaaattgactgtgat
aacttggagcagtactttgtgcaacaaggaggaggacctgataaaaaaggacaccagttc
tcatgtgtgtgtcttcacggcgacagaaagcctcatgagagaaagcaaaacttggaaaga
tttaagaaaggagacgtaagattcttgatttgcacagatgtagctgcgagaggaattgac
atccacggtgttccttatgttataaatgtcaccctgcctgatgagaagcagaactatgtg
caccggattggcagagtgggacgagctgaaaggatgggcctggccatttccctggtggca
acagaaaaagaaaaggtttggtaccatgtctgcagcaaccgtgggaaaggatgctataac
acgaggctcaaggaagatggtggctgtaccatctggtacaatgaaatgcagctactttcc
gaaatagaagaacacctgaactgcaccatttcccaggtggagccagacataaaggttccg
gtggatgagtttgatgggaaagttacatatggtcagaagagggctgctggcggtggaaac
tataaaggccatgtggatatcttggcacctaccgttcaggagttggccgcccttgagaag
gaagcacagacatctttcctgcaccttggctaccttcccaaccagctgttccgaaccttc
tga
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