Peromyscus leucopus (white-footed mouse): 114692201
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Entry
114692201 CDS
T07241
Symbol
Palb2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03440
Homologous recombination
pleu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
114692201 (Palb2)
03460 Fanconi anemia pathway
114692201 (Palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pleu03400
]
114692201 (Palb2)
DNA repair and recombination proteins [BR:
pleu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
114692201 (Palb2)
FA (Fanconi anemia) pathway
Downstream FA components
114692201 (Palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
114692201
NCBI-ProteinID:
XP_028723693
LinkDB
All DBs
Position
1:82598352..82629518
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AA seq
1115 aa
AA seq
DB search
MEEPPGKPLSCAEKEKLKEKLAFLKKEYSKTLARLKRAKRAEKVKNSEKAIEDCVPHQEI
SPQLSRSEPINEGSPCDTLQINHLDEETGENIAVTLDVEPQSFNHKNGQEEEVLHTQRTG
DIQEQFLHGISSPGGKKGQNALPGRTKKQWKKVSVSQEKESFLDLNSLVHPDKQRKTQET
ISSKSPRSPITEETRHLSLKSKPPGPPSLDTEIDGEGLLISPSGKSEKDIDTLVKGNNVS
VETTVPSCTVSDSNHSQHLEHTPPNSDCKMTVRGPASSINLEAQGRKMTIVTDNPVVNKT
VNASDQLSGSPNSEARNSCSLNDLTHSNLPAGTTQNFQSLKSGHVVVGRNENLQEDEILG
PSKNSPAAVSPPSTESQIHSCTMLEGLLFPAEYYVRTTRRMSDCQRKIALEAVIQSHLGI
KKKGLKNKSKAAKNAVLSGEETEQSESSMLDTSTGQSSSGSPSQELISSAEVSSPTGPAE
ADSQSRKATTQLPGRGHRGRRKSVRVSTLAHCQLLFPPCSTLGVNMSKGKFTKHKCPNGK
VIIHDFELPDEEFGPLKLEKLKSYSEKLIESSDSKNYGERLPREGNCATLEELQIDSEME
DLEEKLMAPSAEAQHPGPTLKRQQRTRGISSSIVLFTPTDTAASNHSARSSAYPCSPAFP
ILGKTPAFASQATSENVAAEVGQTCPTSQPYHFGDTSTLANNKQCNSSASSPKLDTNLHV
SGRQGQPACDSDSGPQATPLPIESFTFRENQLCGNACLELHEHSIEQTEITDLPARDSLN
PGSLQLVSKFKNPSSSCSVDVSAVWWERAAAKEPCIITACEDVVSLWKPLDTLQWEKVHT
WHFTEVPVLQIVPVPDVYNLICVALGNLEIREIRALLCSSGDESEKQVLLKSGNIKAVLG
LTKRRLVSSIGTFCNQQVQIMTFAEDGGSKDEQLLMPPDETILAFAEVQGMQDALLGTTT
VNNIVIWNLKTGQLLKKVHIDDSYQASVCHRAYSEMGLLFVVLSHPCAKESQVFGSPVFQ
LLVINPKTAQSVGMLLCCLPPGQTGRFLEGDVKDHIAAAVLTSGTIAVWDLLLGHCTAVL
PPASDQSWSLVKWSGTDSHLLAGQKDGNVFIYRYF
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcctcccgggaagcccctcagctgtgcggagaaggaaaagttgaaggaaaag
ttagcatttttgaaaaaggaatacagcaagacacttgctcgtcttaagcgtgccaaaaga
gctgagaaggttaagaactctgagaaagcaatagaagattgtgtgccccatcaggaaatc
tccccacagctaagccgctctgaacctataaacgaaggctctccttgtgatacattacaa
atcaaccatcttgatgaggaaactggagaaaacatcgctgtgacccttgatgttgaacct
cagtcctttaaccataaaaatggccaagaagaagaagtattacatacacaaagaacaggt
gacatccaggaacagtttttgcatggcatcagcagccctggtggtaagaaagggcagaat
gcactgcctgggagaacaaagaagcagtggaagaaggtatctgtttcacaggagaaagag
tctttccttgaccttaattctctcgtacaccctgacaagcaacgaaagacacaggaaaca
atcagcagcaaaagtcctaggtccccaataactgaagagactcgccatttaagtctgaag
tctaaacctcctggtcctccatcccttgatacagaaattgatggagagggtttattaatt
tcaccatctggcaaatcagaaaaggatattgatacacttgtaaaaggaaataatgtctcc
gtggagactacagttccttcctgtactgtgtcagacagcaatcacagtcaacaccttgaa
catacacctcctaacagtgactgcaaaatgactgttcggggcccagcttcatccataaac
ctggaggcacaaggcagaaaaatgactatagttacagataacccagtagtaaataaaact
gtgaatgccagtgatcagctgtcaggaagtcctaattcagaggcaaggaattcttgttct
ctaaatgatctcactcacagtaacttgccagcaggtactacccaaaactttcagtcttta
aaatcgggtcacgttgttgttggtagaaatgagaatcttcaggaagatgaaattctaggg
ccgtctaagaacagcccagcagcagtttcccctccctccacagaaagccaaatacattct
tgtacaatgcttgaaggccttttgtttcctgcagaatattatgttagaactacccgtcgg
atgtcagactgtcagagaaaaatagctctggaagctgtaattcaaagtcacttgggtatc
aagaagaaagggcttaaaaataaaagtaaagcagctaagaatgcagtcctctccggtgaa
gaaactgagcaaagtgaaagtagtatgttggacacaagcacagggcagtccagctcagga
agtccctctcaggaactaatctcatcagctgaggtcagctctcccacaggacctgctgag
gctgacagccaatccaggaaagccactacacagctgcctggtagaggacacagaggaaga
cgaaaatcagtccgagtctccacactggctcattgtcagctgcttttccctccttgcagc
acactgggtgttaacatgtccaagggcaaattcaccaagcataagtgtccaaatggaaaa
gtgattattcatgacttcgagttacctgatgaagaatttgggcctcttaagcttgaaaaa
ttgaagtcctattcagaaaaactgattgagtcgtctgactcaaaaaactatggagagagg
cttcctagggaaggaaattgtgccactctagaggaactgcagatagattcagaaatggag
gacttggaggagaaactcatggctccatcagcagaagcacagcatccagggccaaccctg
aaaaggcagcaaaggaccaggggcatttcttcatccatagtgcttttcacgcctacagat
acggctgcatctaaccacagtgccagatcctcggcctacccatgttcacctgctttcccc
atcttaggcaagactccagcttttgcctcccaagcaaccagtgagaatgtagctgctgaa
gttggacagacttgccctacatcccaaccttatcactttggagacacaagcactcttgct
aataacaaacaatgcaacagttcagccagctcaccaaaactggataccaacctgcatgtg
tcaggtaggcaaggacaacctgcctgtgacagtgactctggcccccaggcaacacctcta
cccattgagtcattcactttcagagaaaatcagctctgtggaaatgcatgcctcgagtta
catgaacattccattgaacagactgaaatcacagacctccctgctcgagacagcttgaat
ccaggcagcctacagttggtctcaaagttcaagaatccttccagttcctgttctgtggat
gtgagtgccgtgtggtgggaaagagctgctgctaaggagccgtgtatcataactgcttgt
gaagatgtagtttctctttggaaacccttggatactttgcaatgggaaaaagttcatacc
tggcacttcacagaggttccagtgttacaaatagttccagtgcctgatgtttacaatctt
atatgtgtagctttgggaaatttggaaatcagagaaatcagggcattgctgtgttcctct
ggtgatgaaagtgaaaagcaagtactactgaaatctggaaatataaaagctgtgcttggc
ctgacaaagagaagactagttagtagcattggaaccttttgcaatcaacaagtacaaatc
atgacatttgctgaagatggaggtagcaaagatgaacagcttttgatgccccctgatgag
accatactagcttttgctgaagtccaagggatgcaggatgctctgcttggtaccaccact
gtgaacaacattgtgatctggaatttaaaaactggccagctcctgaaaaaggtgcatatt
gatgactcttaccaagcttcggtctgtcacagagcctattctgagatggggctcctattt
gttgttctgagtcatccttgtgccaaagagagccaggtctttggaagccctgtgtttcag
cttctggtgattaaccctaagacagctcagagtgtgggtatgctgctgtgctgtcttcct
ccagggcaaactggaaggttcctggaaggagatgtgaaagatcacattgcagcagcagtc
ctgacttccggaacaatcgccgtttgggacttgcttctgggtcactgcactgctgtcctc
ccacctgcctctgatcagagctggtctttggttaaatggtcaggtacagattctcacctg
ctagctggacaaaaagatggcaatgtattcatatatcgctacttttaa
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integrated database retrieval system
