Peromyscus leucopus (white-footed mouse): 114692607
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Entry
114692607 CDS
T07241
Symbol
Pabpc1l
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03015
mRNA surveillance pathway
pleu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114692607 (Pabpc1l)
09123 Folding, sorting and degradation
03018 RNA degradation
114692607 (Pabpc1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pleu03019
]
114692607 (Pabpc1l)
03041 Spliceosome [BR:
pleu03041
]
114692607 (Pabpc1l)
Messenger RNA biogenesis [BR:
pleu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
114692607 (Pabpc1l)
mRNA cycle factors
Stress granule specific factors
114692607 (Pabpc1l)
Spliceosome [BR:
pleu03041
]
Complex C
Other components
Complex C specific factors
114692607 (Pabpc1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RBD_DEAH11
RRM_Nup35
SET_assoc
RRM_3
RRM_occluded
RRM_MARF1
RRM_fung
YflT
Motif
Other DBs
NCBI-GeneID:
114692607
NCBI-ProteinID:
XP_028724272
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All DBs
Position
4:147327566..147355157
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AA seq
656 aa
AA seq
DB search
MDPGSQSCALSSLYVGDLHPDVTEAMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEMIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFS
TFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKRE
AELGARALGFTNIYVKNLHVDMDEQGLQDLFSQFGKMQSVKVMRDNNGQSRGFGFVNFEK
HEEAQKAVDHMNGKDVNGQQLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKN
LDDSINDERLKEVFSAYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGT
KPLYVALAQRKEERKAILTDQYRQSLSRPVLSSFQQPASYLLPAVSQSTAQAIYYGSGSM
TPMQPDPRWTAQPHGPSSTCPPAASVVQPLSTMQHTCFHLSSASQASSQLPHTQRVVNIG
TQTTGPGGEGRSIPGQPLLTHRGSSAVHSAHGVQESAVYVPGHQPLTVSMLAAAPLHEQK
QMIGERLFSLIHDTCASLTAKITGMLLEMDNLELLFLLESPESLHAKAGGGWEAAQQRAR
AGLDRLWQPTSICCVLVGGSQLRSLHREALCSSLVKLQHKQLCSDCTVTSSPGTSI
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggaccccggtagccagagctgcgcactctcctcgctctatgtgggcgatctgcacccc
gacgtgactgaagctatgctctatgagatgttctcccccatcggcaatattctgtccatt
cgcgtgtgtcgggacgtggccacccggcgctcgctaggctatgcctacatcaacttccag
cagcctgctgatgcggaacgggcactggacacaatgaactttgagatgatcaaaggccag
cccatccggatcatgtggtcccaccgagacccagggcttcgaaagtctggtatgggcaac
atctttatcaaaaacttggagaattctatcgacaacaaggctctctatgacaccttctcc
accttcgggagcatcctctcttctaaggtagtgtataatgaacatggatcacggggcttc
ggctttgtgcattttgagacccatgaggctgcccagaaggccatcaacaccatgaacggg
atgttgctgaatgaccgaaaagtctttgtaggccacttcaagtctcgacagaagcgggag
gcagagctgggggctcgggccctggggttcaccaacatctacgtgaagaacctgcatgtg
gacatggatgagcagggcctccaggacctcttctcccagtttggaaagatgcagagtgtg
aaagtgatgagagacaacaatggccaatcccggggctttggcttcgtcaattttgagaag
catgaggaagcccagaaggccgtggaccacatgaatggaaaggatgtgaacgggcagcag
ctgtacgtgggtcgggcccagaagcgggcagagcggcagagcgagctgaagcgcaggttt
gagcagatgaagcaggagaggcagaaccgctatcagggtgtgaacctttacgtgaagaac
ctggatgactccattaacgacgagaggttgaaggaagttttctctgcctatggagtgatc
accagtgccaaggtgatgacagaaagtagccacagcaaggggtttggctttgtctgcttt
tcctctccagaagaggcaacgaaggccgtgacggagatgaatgggcgcattgtgggtact
aagcctctgtatgtggccctggcacagcgcaaggaggagcggaaggccattctgaccgac
cagtataggcagtccctctctcgtcccgtcttgagctccttccagcagcctgccagctac
ctactgcctgctgtatcccagtccacagcacaggctatatactatggttcgggctccatg
actccaatgcaacctgaccccaggtggacagcccagccacacggaccttcgtccacctgc
cctccagctgcctcggtggtccaaccactaagcacgatgcagcacacatgttttcacctc
agcagtgccagccaggcctccagtcagctgcctcacacgcagagagtagtcaacattggt
actcagactacaggaccaggtggggagggacgctctattccaggccagcctctcctgaca
catagaggatcttcagctgtacacagtgcccatggggtccaggagtcagctgtgtatgtc
cctggccatcaacccctgactgtgtccatgctggctgccgcgcccctgcacgagcagaaa
caaatgattggggagcgactcttctccctcatccacgacacctgtgcctcactgactgcc
aagatcacaggcatgctgctggagatggacaacctggagcttctgtttttgctggagtcc
ccagagtccctccatgccaaggcaggtggaggctgggaggcagcccagcaaagagcgagg
gctggcctagataggttgtggcagccgacatccatctgctgcgtcttagtggggggttcc
caacttcggtccctccacagagaagctctgtgtagctccctagtgaagcttcagcacaaa
cagctgtgttctgactgtacagtcacgtccagccctggcacctcgatttga
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