Peromyscus leucopus (white-footed mouse): 114693182
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Entry
114693182 CDS
T07241
Symbol
Polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03020
RNA polymerase
pleu03420
Nucleotide excision repair
pleu05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
114693182 (Polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
114693182 (Polr2a)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
114693182 (Polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pleu03021
]
114693182 (Polr2a)
03400 DNA repair and recombination proteins [BR:
pleu03400
]
114693182 (Polr2a)
Enzymes [BR:
pleu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
114693182 (Polr2a)
Transcription machinery [BR:
pleu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
114693182 (Polr2a)
DNA repair and recombination proteins [BR:
pleu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
114693182 (Polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
114693182
NCBI-ProteinID:
XP_028725297
LinkDB
All DBs
Position
8b:complement(52679540..52705737)
Genome browser
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggcggccccccctccggggacagcgcatgcccgctgcgcaccatcaagaga
gtgcagttcggagtcctgagtccggatgagttgaagcggatgtctgtgacagagggtggc
atcaaatacccagagacaaccgagggaggtcgccccaagcttgggggactaatggatcca
aggcagggggttattgagcggactggccgctgccagacatgtgcaggtaacatgactgag
tgtcctggccactttggccacattgaactggccaagcctgtgttccatgtgggtttcctg
gtgaagacaatgaaggttttgcgctgtgtctgcttcttctgctccaaactgctcgtggat
tccaacaacccgaagattaaggacatcctggccaaatcgaaggggcagcccaagaaacgt
cttacacatgtctatgacctttgcaagggcaaaaacatctgcgaaggtggagaggagatg
gataacaagtttggtgtggagcagcctgagggggatgaggatctgaccaaagaaaagggc
catggtggctgtggacggtaccagccccggatccggcgctctggcctggagctgtatgct
gaatggaagcatgttaatgaagactctcaggagaagaagatcttgctgagtccagaacga
gtccatgaaatcttcaaacgcatctcagatgaggagtgttttgttctgggcatggagcct
cgctacgcccggcctgagtggatgattgtcacagtgttgcctgtgccgcctctctctgtc
cgaccagctgtggtgatgcaggggtctgcccgcaaccaggatgatctgactcacaaactg
gctgacatcgtgaagatcaacaaccagctgcggagaaatgagcagaatggcgcagctgcc
catgtcatcgcagaggatgtgaaactcctccagttccatgtggccaccatggtggacaat
gaactgcccggcttgccccgtgccatgcagaagtctggccgccccctcaagtccctgaag
cagcggttgaagggcaaggaaggacgggttcgggggaacctgatgggcaaacgcgtggac
ttctcagcccgcactgtcatcacccctgacccgaacctgtccatcgaccaagtcggtgtg
ccccgctccatcgctgccaacatgacctttgcggagattgtcaccccgttcaacatcgac
aggcttcaggaattagtacgcaggggaaacagccagtatccaggagccaagtacatcatt
cgagacaacggtgatcgaattgacttgcgtttccatcctaaacccagtgacttacacctg
cagactggctataaggtggaacggcacatgtgtgatggggacattgttatcttcaatcgt
cagccaaccttgcacaaaatgtccatgatgggacatcgggtccgcatcctcccctggtct
acttttcgcttgaatcttagtgtgacaactccatacaatgcagactttgatggggatgag
atgaatttgcacctgccgcagtctctggagacacgggcagagatccaggagttggccatg
gtgcctcgaatgattgtcacccctcagagcaatcgacctgtcatgggtattgtgcaagac
acgctcacggcagtacgcaaattcacgaagagagatgtcttcttggagcggggtgaagtg
atgaaccttttaatgttcctctccacgtgggatgggaaagtcccacagccagctatcctc
aagccccggccgctgtggacaggcaagcagatcttctccctcatcatacctggtcacatc
aactgcatccgtacccacagcacccatcctgatgatgaagacagtggcccttacaagcac
atctctcctggagacaccaaagtggtggtggagaatggggagcttatcatgggcatcctt
tgtaagaagtccctgggcacctcagcaggctctctggtccacatctcctacctagagatg
ggtcatgacatcactcgcctcttctactccaacattcagactgtcattaacaactggctc
ctcattgagggtcataccattggcattggggattccattgctgattccaagacttaccaa
gacatccagaacaccattaagaaggctaaacaagatgtaatagaggtcattgagaaggct
cataacaatgagctagagcccaccccagggaacacgttacgtcagacatttgagaatcag
gtgaatcgcatcctcaatgatgctcgggacaaaaccggctcctccgcccagaaatccctg
tctgagtacaacaacttcaagtccatggtggtgtctggggcgaaaggctccaagatcaac
atctctcaggtcattgctgttgttgggcagcagaacgtggagggcaaacggatcccattt
ggatttaagcatcggactctgcctcactttatcaaggatgattatggtcctgagagtcga
ggctttgtagagaactcatacttagcaggtcttacacccactgagttcttcttccacgcc
atgggaggacgagaaggtctcatcgacacagccgttaagactgccgagactgggtatatt
cagcgaaggctgataaaatccatggagtccgtgatggtgaaatatgatgcaactgtgcgg
aactccatcaaccaggtggtacagctgcgctatggagaggatggcctagcaggcgagagc
gttgagttccagaatctggctacactcaaaccttctaacaaagcttttgagaagaagttc
cgttttgattataccaatgagagggccctgcggcgcactctccaggaggatctggtgaag
gatgtgctgagcaatgcacacatacagaatgagctggaacgggaatttgaacggatgcgt
gaggatcgggaagtgctcagggtcatcttcccaactggtgacagcaaggtggtcctcccc
tgtaaccttctgcgtatgatctggaatgctcagaaaatcttccatatcaaccctcgcctt
ccctctgatctgcaccccatcaaagtggtagagggagtcaaggagttgagcaagaagttg
gtgattgtgaacggggatgacccactaagtcggcaggcacaggagaatgccacgctgctc
ttcaacatccacctaaggtccacgctctgctctagacgcatggccgaggagtttcggcta
agtggagaggcctttgactggctgcttggggagatagagtccaagttcaaccaagccatt
gcccatcctggagaaatggtgggcgctctggctgcacagtctcttggagaacctgccact
cagatgactctgaacactttccactatgctggtgtgtctgccaagaacgtgacgctgggt
gtacctcgacttaaggagctcatcaatatttccaagaagccaaagaccccttcgctcact
gtcttcctattaggccagtctgctcgagatgcggagcgggccaaggacattctgtgccgc
ttggaacatacaacattgagaaaggtgacagccaacacagccatctattatgaccccaac
ccccagagcacagtggtggcagaggaccaggagtgggtgaacgtgtactatgagatgcct
gactttgatgtggcccgaatatccccctggctcctgcgtgtggagctggaccgcaagcac
atgactgatcggaagctcaccatggaacagattgctgaaaaaatcaacgcaggttttggc
gatgatttgaattgcatcttcaatgatgataacgcagagaagttggtccttcgtatccgc
attatgaacagtgatgaaaacaagatgcaggaggaggaagaggtggtggataagatggat
gatgatgtcttcctgcggtgtattgagtccaacatgctgacagatatgaccctgcagggt
atcgagcagattagcaaggtgtacatgcacttacctcagactgacaacaagaagaagatc
atcatcacagaagacggagagttcaaggccctgcaagagtggatcttggagactgatggt
gtgagcctgatgcgggtgctgagtgagaaggatgtggaccctgtgcgcaccacatcaaat
gacattgtggagatctttacggtgctgggcattgaggctgtgcggaaggccctggagcgg
gaactgtaccatgtcatctcctttgatggttcctatgtcaattaccggcatttggctctc
ttgtgtgacaccatgacctgtcgcggccacttgatggccatcactcgtcatggagtcaac
cgccaggacactggaccactcatgaaatgctccttcgaggaaacggtggacgtgcttatg
gaagcagctgcccacggggagagtgaccccatgaagggagtctctgagaacatcatgctg
ggccagcttgctccagctggcactggctgttttgacctcctgcttgatgctgaaaagtgc
aaatatggcatggagatccccaccaatattcctggcctgggggctgctggacctactggc
atgttctttggctctgcacccagtccaatgggaggaatatctcctgcaatgacaccctgg
aaccagggtgcaaccccagcctacggtgcctggtccccaagtgttgggagtgggatgacc
ccgggagcagctggtttctctcccagcgctgcatctgacgccagtggcttcagcccgggt
tactctccggcctggtctcccacaccaggctctccaggctcccctggaccctcaagcccg
tacatcccctcaccaggtggtgctatgtctcccagctactcgccaacatcacctgcctat
gagccacgctcccctgggggctacacaccccagagtccctcatactccccaacttcaccc
tcctactcgccgacctccccatcctactctccaaccagccccaactacagccccacctcg
cccagctactctcctacatctccatcctactccccgacttctcccagctactccccaaca
tcgccaagctactccccgacttctcccagctactccccaacatcgccaagctactcccca
acatctcccagctactccccgacttctcccagctattccccaacatctcccagctactcc
ccaacgtctcccagctactccccaacgtctcccagctactctcccacctcccccagttac
tcaccgacatctccaagctattctccgacatctccaagctactcaccaacttctccaagt
tactcacccaccagccctaactattctccaactagtccaaattataccccaacatcaccc
agctacagcccaacatcgcctagctactcacctactagtccgaactacacaccgaccagc
cctaactacagcccaacctctccaagctattccccaacttcacccagctactcccccacc
tcgccaagctactccccctccagcccgcggtacacgccacagtccccaacctacacacca
agctctccgagctacagccccagctcaccaagttatagccccacttcacccaagtatacc
ccaaccagtccttcctacagccccagctcaccggagtacacccctacctctcccaagtac
tcacctacaagccccaaatattcacccacttctcccaagtactcccctaccagccccact
tactcccctaccaccccaaaatactccccgacctctcctacgtactcaccgacctctcca
gtctacaccccgacctcccccaagtactcgcctaccagccccacctactcccccacttcc
cccaagtactcccccaccagccccacctactcccccacctctcccaagggttccacttac
tctcccacttcccctggctactcgcccactagccccacctacagcctcaccagcccagcc
atcagcccggatgacagcgatgaggaaaattga
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integrated database retrieval system
