Peromyscus leucopus (white-footed mouse): 114693444
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Entry
114693444 CDS
T07241
Symbol
Col1a2
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(I) chain
KO
K06236
collagen type I alpha
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu04151
PI3K-Akt signaling pathway
pleu04510
Focal adhesion
pleu04512
ECM-receptor interaction
pleu04611
Platelet activation
pleu04820
Cytoskeleton in muscle cells
pleu04926
Relaxin signaling pathway
pleu04933
AGE-RAGE signaling pathway in diabetic complications
pleu04974
Protein digestion and absorption
pleu05146
Amoebiasis
pleu05165
Human papillomavirus infection
pleu05205
Proteoglycans in cancer
pleu05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
114693444 (Col1a2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114693444 (Col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114693444 (Col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114693444 (Col1a2)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
114693444 (Col1a2)
09152 Endocrine system
04926 Relaxin signaling pathway
114693444 (Col1a2)
09154 Digestive system
04974 Protein digestion and absorption
114693444 (Col1a2)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
114693444 (Col1a2)
09172 Infectious disease: viral
05165 Human papillomavirus infection
114693444 (Col1a2)
09174 Infectious disease: parasitic
05146 Amoebiasis
114693444 (Col1a2)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
114693444 (Col1a2)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
114693444 (Col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pleu00536
]
114693444 (Col1a2)
Glycosaminoglycan binding proteins [BR:
pleu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114693444 (Col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Frataxin_Cyay
Motif
Other DBs
NCBI-GeneID:
114693444
NCBI-ProteinID:
XP_028725629
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Position
3:complement(21597194..21632636)
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AA seq
1367 aa
AA seq
DB search
MLSFVDTRTLLLLAVTSCLATCQSLQAGPTGDRGPRGERGPAGPRGRDGANGPDGPPGPP
GPPXPPGPPGLFGLSGKFGAQYSDKGVSSGPGPMGLMGPRGPPGAVGAPGPQGFQGPAGE
PGEPGQTGPAGSRGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGI
RGHNGLDGLKGQPGAQGVKGEPGAPGENGTPGQAGARGLPGERGRVGAPGPAGARGSDGS
VGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPSGPAGPRGEVGLPGLSGPVGPPGN
PGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGETGN
KGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPGGPPGLRGSPGSRGLPGADGRAGVMGP
PGNRGSSGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNVGPAGKEGPVGLPGIDGRPGP
IGPAGARGEAGNIGFPGPKGPSGDPGKAGDKGHPGLAGARGAPGPDGNNGAQGPPGPQGV
QGGKGEQGPAGPPGFQGLPGPSGTAGEAGKPGERGLQGEFGLPGPAGPRGERGPPGESGA
AGPSGPVGSRGPSGAPGPDGNKGEAGAVGAPGSAGASGPGGLPGERGAAGVPGGKGEKGE
TGLRGEIGNSGRDGARGAPGAVGAPGPGGATGDRGEAGAAGPSGPAGPRGSPGERGEVGP
AGPNGFAGPAGAAGQPGAKGEKGTKGPKGENGVVGPTGPVGAAGPSGPNGPPGPIGSRGD
GGPPGMTGFPGAAGRTGPPGPSGITGPPGPPGAAGKEGVRGPRGDQGPVGRTGETGASGP
PGFTGEKGPSGEPGTAGPPGTAGPQGFLGPPGILGLPGSRGERGLPGIAGALGEPGPLGI
AGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGSDGAPGRDGQPGHKGERGYPGNIGPTGA
AGAPGPHGSVGPAGKHGNRGEPGPAGSVGPVGAVGPRGPSGPQGIRGDKGEPGDKGPRGL
PGLKGHNGLQGLPGLSGLHGDQGSPGPVGPAGPRGPAGPSGPAGKDGRSGHPGPVGPAGV
RGSQGSQGPSGPPGPPGPPGPPGVSGGGYDFGFDGDFYRADQPRSQPSLRPKDYEVDATL
KSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWNSDYYWIDPNQGCTMDAIKVYCDFST
GETCIQAQPVNIPAKNSYSSAQANKHIWLGETINGGSQFEYNMEGVTSKEMATQLAFMRL
LANRASQNITYHCKNSIAYLDEETGRLDKAVVLQGSNDVELVAEGNSRFTYTVLADGCSK
KTNEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFSVDVGPVCFK
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatacgcggactctgttgctgcttgcagtaacttcgtgcctagca
acatgccaatctttacaagcgggccccactggagataggggaccacgtggagaaaggggt
ccagcaggtccccgaggcagagatggtgcaaatggtcccgatggcccccctggcccccct
ggcccccctnggccccctggcccccctggtctctttggtcttagtgggaaatttggtgct
cagtattctgacaaaggagtttcatctggccctggaccaatgggcttaatgggacccaga
ggccctcctggtgctgttggagcccccggccctcaaggtttccaaggacctgctggtgag
cctggagaacctggtcaaacgggtcctgcaggttctcgtggtccagctggtcctcctggc
aaggctggtgaggatggtcaccctgggaaacctggacgacccggcgagagaggagttgtc
ggaccacagggtgctcgtggtttcccgggaactcctggacttcctggcttcaaaggcatt
cggggacacaatggtctggatggactgaagggacagcctggtgcacagggtgtgaagggt
gaacctggtgcccctggtgaaaacggaaccccagggcaagcaggagcccgtgggcttcct
ggagagagaggacgagtcggagcccctggtccagctggagcccgtgggagtgatggcagc
gttggtcctgtcggccctgctggtcccattggatctgctggccctcctggttttccaggt
gctcctggtcccaagggtgaacttgggcctgttggtaaccccggcccttctggtcctgct
ggtccccgtggtgaagtgggtcttccaggtctttctggccccgttggacctcctggcaac
cctggagccaatggcctcactggcgccaagggcgctgctggcctccctggcgtggctggg
gctcctggtctccctgggccccgtggcattcctggccccgtcggtgctgctggtgcgacc
ggtgccagaggccttgttggtgaacccggtccagctggctccaagggagagactggtaac
aagggcgagcctggttctgctggagcccaaggtcctcctggccctagtggtgaagaagga
aagagggggtcccctggtgaacctggatctgcaggccctggagggcctccagggctgaga
ggcagccctggttctcgtggtcttcctggagctgatggcagagctggtgttatgggccct
cctggcaatcgtggctcaagtggtcctgccggagtccgaggtcccaatggagatgctggt
cgccctggggagcctggtctcatgggtcccagaggtcttcctgggtctcctggaaatgtt
ggcccagctggtaaagaaggacctgtgggtctccctggcattgacggcagacctggccca
attggccccgctggagcaagaggtgaagctggcaacattggattccctggacccaaaggc
ccatctggtgatcctggcaaagctggtgataaaggtcatcctggtcttgctggtgctcgg
ggtgctccaggtcctgatggaaacaatggtgctcagggacctcctggaccccagggtgtc
cagggtggcaaaggtgaacagggtcctgctggtcctccaggcttccagggtctgcctggt
ccctcaggtaccgctggagaagccggcaaaccaggagaaaggggtcttcaaggtgaattt
ggtctccctggtcctgctggcccaagaggagaacgtggtcccccaggtgagagtggagcg
gctggcccttctggtcctgttggaagccgtggtccctctggagccccagggcctgatgga
aataagggtgaagctggtgcggtcggtgctccgggctctgctggtgcctctggtcctggt
ggtcttccaggagagaggggtgctgctggcgtccctggaggcaagggcgaaaagggtgaa
accggtctcagaggtgaaattggaaattctggcagagatggtgctcgtggtgctcctggt
gctgtaggcgcccctggtcctggtggagccacaggggaccggggtgaagctggtgctgcc
ggtccttctggcccagctggtcctcgaggtagtcctggtgaacgtggggaggtgggtcct
gctggccccaatggattcgctggacctgctggtgctgctggccaacctggtgctaaagga
gagaagggaaccaaaggacctaagggcgaaaatggtgtcgtcgggcctactgggcctgtt
ggagctgctgggccctctggtcccaatggcccacctggtcctatcggaagtcgaggtgat
ggagggcccccgggtatgaccggcttccctggtgctgctggacggactggcccccctgga
cccagtggtattactggccctcctggtccccctggtgctgctggtaaagaaggggtccgt
ggtcctcgtggtgaccaaggtccagttggtcgaactggagaaacgggtgcatccggcccc
cctggatttactggtgaaaagggtccctctggagaacccggtactgcgggaccccctggc
accgcaggtcctcagggttttctcggtcctcctggtattctgggtctccctggctctaga
ggtgaacgtggtctgccaggtattgctggtgcactgggtgaacctggtcctctgggcatc
gcaggccctcctggggctcgtggtccccctggtgctgtgggtagccctggagttaacggt
gctcctggtgaagctggtcgtgatggcaaccctggcagcgatggtgccccaggtcgtgat
ggtcaacctggacacaagggagagcgtggttaccctggcaacattggtcctaccggtgct
gcaggtgcacctggtcctcacgggtctgtgggtcctgctggaaaacatggaaaccgtggt
gagcctggtcctgctggttctgttggtcccgttggtgctgttggtccaagaggtcctagt
ggtcctcaaggcattcgaggtgataagggagaacctggcgacaaagggcccagaggtctc
cctggcttaaagggacacaacggattacagggtcttcccggcctttctggcctacatggt
gatcaaggttctcctggccccgtgggtcccgctggtcccaggggtcctgctggtccttct
ggccctgctggcaaagatggtcgatctggacatcctggaccagtcgggcctgctggtgtt
cgtggctctcagggtagccaaggtccctctggtcctcctggtcccccaggtcctcctggc
cctcctggtgtcagtggaggtggctatgactttggttttgatggagacttctacagggct
gaccagcctcgctcccagccttcactcagacccaaggactatgaagttgatgcaactctg
aagtctctcaacaaccagattgagacccttctcactcctgaaggctctagaaagaaccct
gcccgcacatgccgggacttaagactcagccacccagagtggaacagcgattactactgg
attgaccctaaccaaggatgcactatggatgccatcaaagtgtactgtgatttctctact
ggtgaaacctgcatccaggcccaacctgtaaacatcccagccaagaactcatacagcagt
gcccaggccaacaagcacatctggttaggagaaaccatcaatggcggcagccagtttgaa
tacaacatggaaggggtaacctccaaggagatggcaactcaacttgccttcatgcgcctg
ctggccaaccgtgcatctcaaaacatcacctaccactgcaagaacagcatcgcatacctg
gatgaggagactggccgcttggataaggctgtggttctgcagggttccaacgatgtcgaa
ctggttgctgagggcaacagcaggttcacctacactgtccttgcagatggctgctccaaa
aagacgaatgagtggggcaagacaatcattgaatacaaaacaaataagccatctcgcctg
cccttcctggacattgcacctctggacatcggtggcgctgaccaagaattcagtgtggac
gttggcccagtctgtttcaaataa
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