Peromyscus leucopus (white-footed mouse): 114693525
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Entry
114693525 CDS
T07241
Symbol
Topbp1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
114693525 (Topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pleu03032
]
114693525 (Topbp1)
03400 DNA repair and recombination proteins [BR:
pleu03400
]
114693525 (Topbp1)
DNA replication proteins [BR:
pleu03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
114693525 (Topbp1)
DNA repair and recombination proteins [BR:
pleu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
114693525 (Topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
DUF1635
Motif
Other DBs
NCBI-GeneID:
114693525
NCBI-ProteinID:
XP_028725753
LinkDB
All DBs
Position
7:91917129..91970734
Genome browser
AA seq
1515 aa
AA seq
DB search
MSRNDQEPFFVKFLKSSNNSECFFKALESIKELQSEDYLQIITEEEALTIKENDRSLYIC
DHFSGAVFDHLKQLGCRIVGPQVVTFCMHHQQCVPRAEHPVYNMIMSNITVSCTSLDRDK
REEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQ
EKKITRYTDINMEDFKCPIFLGCIICVTGLNGVHRKTVQQLTAKHGGQYMGQLKMNECTH
LIVQEPKGQKYECAKRWNVHCVTLQWFHDSIEKGFCQDESIYKAGPRAEVKTVPDTSTPT
AQSNAAAESRTLADVSHISNINGSCVNETMFGSTTSKLECTLENLENLDISVFQAPEDLL
DGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYEDDLRQFWSKSSHRP
HVVGAKWLLECFSKGYILPEEPYIHTNYQPAGIPVSDQPAHQTVVLEKSNTFSKKDFAPN
EKLQQADEDLLAQYVNNDSTVVEAIEPEVGPYSDSTQVEPCDDSTHISVQAEDQSSVSHC
LLDGSAVPEEGLFSQKSFLVLGFSIENERNILNIIREHAGKIVSLPSRIVADYAVVPLLG
CEVEAAVGDVVTNTWLVTCIEYQTLVDPKSNPLFTPVSVMSGMTPLKDCVISFSQCVGAE
RDSLVFLASHLGASVQEFFVRKSSAKKGMLASTHLIVKEPIGSKYEAAKKWSLPAVTISW
LLETARMGKRADESHFLVDSAPKQEQVLETKLPNVMNPNPDSPGHPDTHLEMHRKMAVTP
LDMNRFQSKAFQAVISQHCKQDSVSSALKKPLKKEPSLHLDTPSKFLSKDKLFKPSFDVT
DALAALETPRAATQKRKLSSPLSEVIVRNLKVALANSSRNTSTLSASPQPKGDDHLEEVE
TPQPLDKVVVCVSKKLSKKQSELNGVAASLGAEYRWSFDESVTHFIYQGRTNDSNREYKS
AKERGVHIVSEHWLLECAQEYKHLPESLYPHTYNPKMSLDISTVQGGRLCTSRVPSAVSA
SKDDEPDHLSVEENETNNVATNNEESALLNGDGRIDCKGVLTQTLEMRENFQKQLQEIMS
ATCIVKTQAQKTSLSRSSCNSASSTPDSARSARSGRSRVLEALRQSRQIVPDINTEPSQN
EQIIWDDPTAREERARLASNLQWPSYPTQYSELQVDIKKLDDSPPPREPVYHSEIAEQAL
CVTEAPEHPVSEEPETPAADRRPLFPGPEPPSIAFPLPKAPGPPQPADKIETMEESQEKL
KKQYVFQMSSLNSQERIDYCHLIKKLGGSVIEKQCSDPNCTHMVVGYPLRNEKYLASMAA
GKWVLHRSYLEACRTAGCFVQEEDYEWGSSSILDALTDVTEHQQKLALAAMRWRKRIQQR
QESGIVEGAFSGWKVILRVDRPREAGFKRLLQAGGAEVLPGHPVPLFNEATHLFCDFNKL
KPDDCRVFMAEAAAQNMACLKTEYIADYLMLESPPCADNYRLSEAALLQNKESGPGLSQK
RRAPAENVIKRSRVH
NT seq
4548 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaaatgaccaagaaccgttttttgtgaagtttttaaagtcttcaaacaattca
gaatgtttttttaaagctcttgagtcaataaaggaattacaatcagaagattatcttcag
attattacagaagaagaagcattgacgataaaggagaatgacaggtcactttatatctgt
gaccatttcagtggggctgtttttgatcaccttaaacagcttggctgcagaattgttggt
cctcaagtagttacattttgtatgcaccaccagcagtgtgtcccaagagctgagcatcca
gtttacaatatgattatgtccaatataactgtctcttgtacaagcctggatagagacaaa
agggaagaagttcataaatatgtacagatgatgggtggacgagtgtacagagaccttaat
gtgtcagtcactcacctcattgcaggagaagttgggagcaaaaaatatctagttgctgct
aatctgaagaaacccattttgcttccttcttggataaaaacactttgggagaagtcacaa
gagaagaaaataaccagatacactgacataaacatggaagactttaagtgtcctattttt
cttggttgcattatctgtgtgactggcttaaatggtgtacacagaaagacagttcagcaa
ctcacagctaagcatggaggccagtacatggggcagctgaagatgaatgagtgtacacac
ctcatcgtgcaggaaccgaaaggacaaaaatatgaatgtgccaagagatggaatgtgcac
tgtgtgaccctgcagtggtttcatgacagtattgagaaaggcttttgtcaagatgaatct
atatacaaggctggacccagagcagaagtaaagacagtgcctgatacttcaactcccact
gctcagagtaatgcagcagccgaaagtcgtactctggcagatgtcagccatatatccaac
ataaatggcagctgtgtaaatgaaacaatgtttggttcaactactagcaaacttgaatgt
acacttgaaaacttagaaaatctggacatcagtgtgtttcaagcacctgaggatttgcta
gatggctgtcggatatacctctgtggttttagtggcagaaagctagataagctgagaagg
cttattaacagtggcggtggagttcgatttaatcaacttaatgaagatgtaactcatgta
attgtgggagattatgaggatgacctgaggcagttttggagcaaatcatcccacaggcct
cacgtagtgggagcaaagtggttgctggagtgttttagcaagggatatatactccccgaa
gagccgtatatccacactaactaccagccagctgggattccggtttcagatcagcctgca
caccagacagttgtcttagaaaagagcaacacattctctaagaaagattttgctcctaat
gagaagctccagcaagctgatgaggatctgctcgctcaatatgtaaataatgactccaca
gtagttgaagctatagagcctgaagttgggccttacagtgattctactcaagttgagccc
tgtgatgactccactcacatttctgtgcaagcggaagaccagtcttcagtcagccattgc
ctccttgatggctctgcagttcctgaggaaggcttatttagccaaaagagcttcttggtt
ttgggttttagtattgaaaatgaacgtaacattttaaacatcataagagaacatgctgga
aagattgtgtcccttcccagcagaattgttgctgactatgctgtggttccgctgctgggg
tgtgaagtagaagcagctgtgggagacgttgttacaaacacatggctggttacgtgtata
gagtaccagacactagttgatcccaagtcgaatcccctcttcacaccagtgtcggtaatg
tcgggaatgactcctttaaaggactgtgtgatttctttcagtcagtgtgttggagcagaa
agagattccttggtattcttagcaagtcaccttggagcaagtgttcaagaattctttgtt
cgaaaatccagcgcaaagaaaggcatgctcgccagtacacatcttatagtgaaagaaccg
attggttctaaatacgaagctgcaaagaagtggagtttgccggcagtcactatttcatgg
ctcttagaaactgctagaatggggaagagagcggatgaaagccattttctggttgacagt
gcacctaaacaagaacaagtattagaaactaagctaccaaatgtaatgaatccaaatcca
gactctccaggacatcccgacacacatctagaaatgcacagaaaaatggctgttacacct
ttggacatgaaccgctttcagagtaaagctttccaggctgttatatctcagcactgtaag
caggactcagtctcttcggcacttaagaagccgcttaagaaggaaccctccttacacctg
gacacaccatcaaagtttctgtctaaggacaaacttttcaagccatcttttgatgtgacg
gatgcacttgcagccttggagaccccaagagctgccacccagaagaggaaactgagttca
ccactctctgaagtcatcgtcagaaacttgaaagttgccttggcaaatagttcccgaaac
accagcactctttctgccagccctcagccgaagggtgacgaccatttggaggaggtagag
actccacagccacttgacaaagttgtggtgtgtgtgagtaaaaagctcagtaagaaacag
agtgaactaaatggggtcgcagcctcactgggagcagagtataggtggagttttgatgag
tcagtgactcatttcatttatcagggtcggacaaatgatagtaatcgagaatataaatct
gcaaaagaaagaggggtgcatattgtttccgagcattggcttttagagtgtgctcaagag
tataagcatcttcctgaatctctgtatccacacacttacaatcccaaaatgagcctggac
atcagtacggtgcaaggtggccggctctgtactagccgggtaccctcagctgtctctgct
tccaaggacgatgagccagatcatttgtctgtagaagaaaatgagacaaacaacgtggcc
acgaataacgaagaatcggcactgttgaatggggatggaagaattgactgtaaaggagtt
ctgacacagaccttggagatgagagaaaacttccagaagcagttgcaagagatcatgtca
gcaacctgcatcgtgaagacgcaggcacagaagactagcctgtcaagaagcagttgtaac
agtgcttcttcaactcctgacagtgctcgctctgctcggagtggccggagtcgagtcctg
gaggcactcaggcagtctcgacagatagtgcctgacatcaacacagaaccctcccagaac
gagcagattatttgggatgacccaacagcaagggaggagagagcaaggctggccagcaac
ttgcagtggcctagctaccccacacagtattctgagcttcaggttgacattaaaaaactg
gatgattctcctcctcctcgagagcctgtgtaccattcagaaattgctgagcaggccttg
tgtgtgactgaagctccagaacacccagtgtctgaagaaccagaaactccagcagcagat
aggcggcctctcttccccgggcctgagccccccagcattgcttttcccctgcccaaggca
cctgggcctccacagcctgcagacaagattgaaacaatggaggagagtcaagaaaaactt
aaaaaacagtatgtattccagatgtcatcactgaattctcaagagaggattgattactgt
cacctgattaaaaaactaggtggatcagtgattgagaagcagtgctcagaccccaactgc
acacacatggttgtggggtacccattgcgcaatgagaagtacttggcctccatggcagct
ggcaagtgggtgcttcatcgctcctacctggaagcttgcaggacagctgggtgctttgtg
caggaagaagactatgaatggggaagtagctccatacttgatgctctcacagacgtcact
gagcaccagcaaaaactagcacttgcagcaatgaggtggaggaaaagaatccagcagaga
caagaatcaggcattgttgagggagcatttagtggctggaaggttattttacgtgttgat
cggccccgagaagccgggtttaagcgtcttcttcaggcaggaggagcagaggtgctacct
ggtcatccagttcctttatttaatgaggccacacatcttttttgtgacttcaataaactg
aagcctgatgactgcagagttttcatggcagaggctgctgcccagaacatggcctgcttg
aaaacagaatatatcgctgattatctcatgctggaatcgcctccttgtgcagataattac
cgactctcagaagctgctttactccagaataaagagtctgggcctggattatcccagaag
aggagggctcctgcagagaatgtcatcaaaaggtctcgagttcactag
DBGET
integrated database retrieval system
