Peromyscus leucopus (white-footed mouse): 114693856
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Entry
114693856 CDS
T07241
Symbol
Ift88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pleu03037
]
114693856 (Ift88)
Cilium and associated proteins [BR:
pleu03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
114693856 (Ift88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_7
TPR_8
TPR_19
TPR_16
TPR_14
TPR_6
TPR_11
ANAPC3
TPR_10
TPR_17
TPR_CcmH_CycH
ARM_TT21_4th
TPR_9
ARM_TT21_5th
ARM_TT21_N
TPR-S
TPR_21
TPR_15
RPN7
DUF6584
ARM_TT21_C
HAT_PRP39_C
HEAT_Nup120
Coatomer_E
ARM_TT21_2nd
Motif
Other DBs
NCBI-GeneID:
114693856
NCBI-ProteinID:
XP_028726249
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All DBs
Position
9:complement(65945877..66052275)
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AA seq
788 aa
AA seq
DB search
MMENVHLAPETDEDDLYSGFNDYNPAYDTEELENDTGFQQAVRTSHGRRPPVTAKIPSTA
VSRPIATGYGSKTSLTSSMGRPMTGTIQDGVARPMTAVRAAGFSKAALRGSAFDPLGQSR
GPAPPLEAKNEDSPEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVR
QREQVTTPENINLDLTYSVLFNLASQYSANEMYAEALNTYQVIVKNKMFSNAGRLKVNMG
NIYLKQRNYSKAIKFYRMALDQIPSVHKEMRIKIMQNIGITFIKTGQYSDAINSFEHIMS
MAPNLKAGFNLILSCFAIGDREKMKKAFQKLIAVPLEIDEDDKYISPSDDPHTNLLIEAI
KNDHLRQMERERKAMAEKYIMTAAKLIAPVIEASFAVGYNWCVEVVKASQYVELANDLEI
NKAITYLRQKDFNQAVDTLKMFEKKDSRVKSAAATNLSFLYYLENEFAQASSYADLAVNS
DRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALD
SFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLISVVPTDSQALSKLGELYDSE
GDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKWQLM
VASCFRRSGNYQKALDTYKEIHRKFPENVECLRFLVRLCTDIGLKEVQEYATKLKRLEKM
KEMREQRIKSGRDSGGGSRSKREGSSGSDASYVDPLGPQIERPKTAAKKRIDEDDFADEE
LGDDLLPE
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgatggaaaatgtgcacctggcaccagaaacagatgaagacgatctttattctggtttt
aatgactacaacccagcctatgatactgaggagttggagaatgacacaggttttcagcaa
gcggtgagaaccagtcatggcagaagacctccagtaactgctaaaataccaagcacagca
gtcagcagacccatagccactggatacgggtctaagacatccctgacatcatcaatggga
agaccaatgacagggactatccaggatggagttgctcgacccatgacagcagtgagagca
gctggcttttccaaggcagccttacgaggctctgcgtttgaccccctcggccagtccagg
ggccctgctcctcctttggaagccaaaaacgaagatagtccagaggaaaagatcagacag
ttggagaagaaagtcaatgagctggtagaagagagctgcattgccaacagctgtggagac
ttaaagctggccttagaaaaggcaaaagatgcaggaaggaaagagagagtcctggtgaga
cagcgagagcaagttacgactccagaaaatatcaacctggacttaacgtactccgttctc
ttcaacttggccagtcagtattcagctaatgaaatgtatgcagaagcactaaacacatac
caagttatagtgaaaaataagatgtttagcaatgcagggagactgaaagtgaatatggga
aatatttatttaaagcagaggaattattccaaagccattaagttctaccgaatggcctta
gatcagatcccgagtgtccataaagaaatgaggattaaaataatgcagaacattggaatt
acatttataaaaactggtcaatattcagatgccattaactcattcgagcacatcatgagt
atggccccgaatctgaaggcaggcttcaacctcattctcagttgtttcgccattggagat
cgagagaaaatgaagaaggcattccagaaattaattgctgttccgttagaaattgatgaa
gatgataaatatatctccccaagtgatgatccccatactaacttactgattgaggctata
aaaaatgaccatctcaggcagatggaacgtgaaaggaaagccatggcagaaaaatacatc
atgacagctgcaaagctcatcgctcctgtgatcgaagcgtcctttgctgtgggttataac
tggtgtgtggaagtggtgaaggcttctcagtacgtggagctggccaacgacctggagatt
aacaaagcaattacatacttgagacaaaaggactttaaccaagctgtagacaccttgaaa
atgtttgaaaagaaggacagtagagtgaaaagtgcagctgcaaccaacctctccttcctg
tattacctggaaaatgaatttgcccaggccagcagctatgcagacctagctgtgaactcg
gatagatacaacccatcagctctcactaataaagggaacacggtttttgcaaatggtgat
tatgagaaggcagctgaattctataaagaggccctaagaaatgattcttcttgtactgaa
gcactttataacattggcctcacctataagaagctaaaccgtctggatgaagccctggac
tccttcctgaaactgcatgcaatccttcggaacagcgctcaagttctttgccagatagca
aatgtatacgagctaatggaagatcccaatcaagccattgagtggctgatgcagttgatc
agcgtggtgccgactgactcccaagctctgtctaaactaggagaactatacgacagtgag
ggggataagtcccaggcgttccagtattactatgagtcatacaggtatttcccttctaat
attgaggtcattgagtggcttggagcttattacattgatacccagttctgcgaaaaagct
attcagtactttgaaagagcatctcttatacaacccacccaagtgaaatggcagctgatg
gtggctagctgtttcagaagaagtggtaactaccaaaaggcattagatacttacaaagag
atccacaggaaatttccagagaatgttgaatgtttgcgtttcttggttcgtctctgcaca
gatattggattaaaagaagttcaagaatatgccacaaaactcaagaggttggaaaaaatg
aaagaaatgagggaacagcgcataaagtcgggcagagacagcggtggaggctctcgcagc
aaacgagaggggagctctggcagtgatgcctcctatgtggatccactgggccctcaaata
gaaagaccaaaaacagcagccaaaaagagaatcgacgaggatgattttgctgatgaagag
ttaggagatgacttgcttccagaataa
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