Peromyscus leucopus (white-footed mouse): 114694713
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Entry
114694713 CDS
T07241
Symbol
Lsm8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated isoform X1
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03018
RNA degradation
pleu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114694713 (Lsm8)
09123 Folding, sorting and degradation
03018 RNA degradation
114694713 (Lsm8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pleu03019
]
114694713 (Lsm8)
03041 Spliceosome [BR:
pleu03041
]
114694713 (Lsm8)
Messenger RNA biogenesis [BR:
pleu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114694713 (Lsm8)
mRNA degradation factors
5'-3' decay
Lsm complex
114694713 (Lsm8)
Spliceosome [BR:
pleu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
114694713 (Lsm8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
114694713
NCBI-ProteinID:
XP_028727580
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All DBs
Position
3:complement(8594355..8600802)
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AA seq
96 aa
AA seq
DB search
MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgacgtctgccttggagaactacatcaaccgaaccgttgctgttatcacttctgatggg
agaatgattgtgggaacactaaaaggttttgaccagaccattaatttgattttggatgaa
agccatgagagggtattcagctcttcacaaggagtagaacaagtcgtattaggattatac
atcgtgagaggtgacaatgtggcagtcattggagaaattgatgaagagacggactctgca
ctcgacttggggaacatccgagcagagcctctgaactctgtagcacactga
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