Peromyscus leucopus (white-footed mouse): 114695104
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Entry
114695104 CDS
T07241
Symbol
Col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu04151
PI3K-Akt signaling pathway
pleu04510
Focal adhesion
pleu04512
ECM-receptor interaction
pleu04820
Cytoskeleton in muscle cells
pleu04926
Relaxin signaling pathway
pleu04933
AGE-RAGE signaling pathway in diabetic complications
pleu04974
Protein digestion and absorption
pleu05146
Amoebiasis
pleu05165
Human papillomavirus infection
pleu05200
Pathways in cancer
pleu05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
114695104 (Col4a2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114695104 (Col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114695104 (Col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114695104 (Col4a2)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
114695104 (Col4a2)
09154 Digestive system
04974 Protein digestion and absorption
114695104 (Col4a2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
114695104 (Col4a2)
09162 Cancer: specific types
05222 Small cell lung cancer
114695104 (Col4a2)
09172 Infectious disease: viral
05165 Human papillomavirus infection
114695104 (Col4a2)
09174 Infectious disease: parasitic
05146 Amoebiasis
114695104 (Col4a2)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
114695104 (Col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pleu04147
]
114695104 (Col4a2)
00536 Glycosaminoglycan binding proteins [BR:
pleu00536
]
114695104 (Col4a2)
Exosome [BR:
pleu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
114695104 (Col4a2)
Glycosaminoglycan binding proteins [BR:
pleu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114695104 (Col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
114695104
NCBI-ProteinID:
XP_028728133
LinkDB
All DBs
Position
17:1267657..1409717
Genome browser
AA seq
1709 aa
AA seq
DB search
MDRVKFAASGPALRGCRWLLLATVTVGVLAQSVLAGVKKSDVPCGGRDCSGGCQCFPEKG
ARGQPGPVGTQGYTGPPGLQGFPGLQGRKGDKGERGAPGPTGPKGDVGARGVSGFPGADG
IPGHPGQGGPRGRPGYDGCNGTRGDAGPQGPSGPGGFPGLPGPQGPKGQKGEPYALSQEE
RDKYRGEPGEPGLVGYQGPPGRPGPIGQMGPVGAPGRPGPPGPPGPKGQPGNRGLGFYGE
KGEKGDVGQPGPNGIPSDTTLVGPTTTTYHPDLYKGEKGSKGETGIPGTTLKGEEGIMGF
PGMRGLPGLDGEKGIFGQKGSRGLDGFQGPSGPRGPKGERGEQGPPGPPAYSPHPALAKG
IRGDPGSPGTRGEPGSRGEPGDPGPMGPPGPSVGDEDTKRGLPGEMGPKGFSGEPGHPAR
YPGSPGVDGKPGLQGATGPPGPPGPDGFLFGLKGSEGRVGYPGPSGFPGTRGQKGWKGEA
GDCQCGQFIGGLPGLPGPKGFPGVNGELGKKGDQGDPGVHGIPGFPGLKGAPGLTGIPGP
KGVKGDSRTVTTKGERGQPGIPGVHGMKGDDGIPGRDGLDGFPGLPGPPGDGIKGPPGDA
GLPGLPGTKGFPGEVGPPGQGLPGPKGERGFPGDAGFPGPPGLPGPPGPPGTPGQIDCDT
GVKRPFGDGQQVAVQPGCVGGPTGSPGQQGPPGPTGIKGIRGTPGFPGGSGAPGLKGFPG
EPGREGFPGPPGFMGPRGSKGATGLPGPSGLPGPIGLPGPAGPPGDRGIPGEVLGAQPGP
RGDAGLPGHPGLKGPPGERGPPGFRGSQGMPGMPGLKGQPGFPGPSGQPGLSGPPGQHGF
PGAPGREGPLGLPGSPGLGGLPGDRGEPGEPGVPGPVGMKGLSGDRGDAGMSGERGHPGS
PGFKGMAGMPGLPGQKGDRGSPGMDGFQGMLGLKGRPGFPGIKGEAGFFGVPGLKGLPGE
PGVKGNRGDMGPPGPPPIIQPGMKDIKGEKGDEGPMGLKGYLGVKGVQGMPGVPGLSGIP
GLPGRPGYIKGVKGDIGVPGIPGSPGEQGVIGPPGITGFPGFTGSRGEKGAPGRAGFFGE
TGPTGDFGDIGDTVNLPGSPGLKGERGVTGIPGLKGFFGEKGAQGEVGFPGITGIPGGQG
SPGLKGQTGFPGLTGLQGPQGEPGRSGVPGDKGDYGWPGVPGLPGFPGIRGISGLHGLPG
TKGFPGSPGADIHGDPGFPGPTGDRGDRGEANTLPGPVGAAGQKGERGTPGERGPAGSPG
LQGFPGISPPSNISGPPGDVGAPGIFGLEGYRGPPGPPGSDALPGIKGDEGTSGAAGLPG
EKGWVGDPGPQGQPGVVGLPGEKGPRGEQGFMGNPGPSGNVGDRGPKGPKGDQGFPGAPG
SMGSPGIPGIPQKIATQPGTMGPQGRRGLPGAQGEMGPQGPPGDPGFRGAPGKAGPQGRG
GVSAVPGFRGDQGPMGQQGPVGQEGEPGRPGSPGLPGMPGRSVSIGYLLVKHSQTDQEPM
CPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDK
SYWLSTTAPLPMMPVAEEEIKPYISRCSVCEAPAVAIAVHSQDVTIPHCPTGWRSLWIGY
SFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGGRGTCHYFANKYSFWLTTIPEQN
FQGTPSADTLKAGLIRTHISRCQVCMKNL
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atggaccgagtgaagttcgcagcgtctggccctgccctgcgagggtgtaggtggctgctg
ctggcgactgtgacagtgggggtcctggctcagagcgtcctggcgggggtgaagaagtcg
gatgtgccgtgcggaggcagagactgcagcggcggctgccagtgcttccccgagaaagga
gcacggggccagccggggccagtgggcacccaggggtacactgggcccccagggttgcaa
ggcttcccgggactacagggccgcaaaggagacaagggcgaacgaggagctcctggacca
accggaccaaaaggagatgtgggagcaagaggcgtctctggattccccggtgcagatgga
attccaggacacccagggcaaggtgggccccgaggaagacccggctatgatggctgcaat
gggaccagaggagatgcaggtccacaagggccctctggacctggaggcttccctggcctc
cctgggccccaaggacccaaggggcagaaaggtgaaccttacgcactgtctcaagaagaa
cgcgacaaatacaggggtgaacctggagagcccggactggtcggctaccaggggcctcct
ggccgcccagggccaataggacagatgggtcccgtgggagctcctggaagaccgggacca
ccggggccccctggacccaaaggacaaccaggcaaccgaggacttggtttttacggagag
aagggcgaaaagggtgacgttgggcagccaggacccaacgggatcccatcagacaccacg
cttgttgggcccacaacgacaacataccatccggatctgtacaagggtgagaagggaagc
aaaggagagacgggaataccaggcaccaccttgaagggcgaggaaggcatcatgggattc
ccgggaatgcggggtcttcctggccttgacggagaaaaaggaatcttcgggcagaaagga
agcagaggcctagatggtttccaaggccccagtggaccccgaggacccaagggagaacgt
ggggaacaaggacccccaggaccccctgcctactcaccccatccagccctggcaaaaggt
atcagaggtgacccaggatccccaggtactcgtggggagccaggaagccgaggcgagccg
ggagaccctggccccatggggcccccaggcccatctgttggagatgaagatacaaagaga
ggccttccaggggagatgggacccaagggcttctcgggagaaccgggccacccagcacgc
tatccaggttcaccaggagttgatggaaaaccaggtctccaaggagccactggacctcca
ggcccacctggaccagacggcttcttgtttggcctgaaaggatcagaaggaagagtgggt
tacccaggaccttcaggtttcccagggactcgagggcagaaaggatggaaaggtgaagcc
ggagactgccagtgtggccagttcatcgggggtcttccaggattgcccggacccaagggt
tttcccggtgtcaatggggagctggggaagaaaggggaccaaggggacccgggtgtgcat
ggtatccccgggttcccaggactcaagggagccccaggcctcactggcattcctggaccc
aagggagtaaagggggactccaggacagtaaccaccaaaggtgagcgaggccagccaggc
atccctggtgtacatgggatgaaaggtgatgacggtatcccgggacgcgatgggctggat
ggatttcctggccttcctggccctccgggcgatggcatcaaaggccctccgggggacgca
ggtctccctggcttacctggaaccaagggctttccaggagaggtgggtcctccaggacag
ggcttaccaggcccaaaaggcgaacgtggcttccctggtgatgctggatttccaggacct
ccaggcttacctggtcctccaggtcccccaggaaccccaggacagatagactgtgacaca
ggtgtgaaaagaccctttggagatggccagcaagtggccgtccagccaggttgcgttgga
ggccccacaggatcacctggccagcaaggacccccaggccccacaggtatcaaaggcatc
agaggaaccccaggattcccaggaggttctggagcaccaggtctcaagggctttccagga
gagccgggtcgtgaaggcttcccaggacccccagggttcatgggaccccgaggatccaaa
ggtgccacaggcctccctggcccatccggactcccgggccccattggacttccaggacca
gccggaccccctggggacagagggattccaggagaagtcctaggggcccaacccggaccc
cggggagatgctggattaccgggacaccctgggctaaaggggcctccgggagaaagagga
ccccctggattcagaggaagccaagggatgcccgggatgccagggcttaagggtcagcca
ggctttccaggaccttcgggacagccaggactatctggacctccaggacaacatggattc
ccaggagcccctggccgagaggggcccttggggctgccaggctcccccggccttggaggt
ttgcctggagacaggggtgagcccggtgagcctggagtccctggccctgtgggcatgaaa
ggcctgtctggggacagaggtgatgccggcatgtcaggcgagcgtggtcatcccggaagc
cctggctttaaagggatggcggggatgcctggcctccctgggcaaaaaggcgaccggggg
tcaccaggaatggacggcttccagggcatgctgggactcaagggaagaccagggttccca
ggaatcaaaggagaggctggattctttggagtgcctggtctgaaggggctgcctggagag
ccgggtgttaaaggaaaccgaggggacatgggccccccaggaccacctcccatcatccag
ccggggatgaaggacattaaaggagagaagggggatgaagggcccatgggcctgaaaggc
taccttggcgtgaaaggtgtccaaggaatgcctggggtccctgggctgtctgggatcccc
gggctaccggggcggcccggttacatcaaaggagtcaagggcgacatcggagtccctggc
ataccaggctcgccaggggaacagggggtgattggccctcctggaattaccggattccca
ggattcacgggaagccggggtgaaaagggtgctccaggaagagcagggttttttggcgag
actggccccactggggacttcggtgatatcggggatactgtgaacttaccgggaagcccg
ggcctgaagggggaacggggagtcaccggaattccaggtctcaagggattctttggagag
aaaggagcgcaaggtgaagttggatttcccgggataacaggcatccctggaggccagggc
tctcccggactcaaaggacagacaggttttccagggctcacagggctgcaagggccacag
ggagagccgggacggagcggagtgcccggtgacaagggggattacggctggcccggggtg
ccaggcttaccaggtttcccaggaatccgagggatcagcggattacacggcctgccaggc
accaaaggcttccccggatccccaggtgctgacatccatggagacccagggttcccaggc
cccactggagaccggggtgaccgaggagaagccaacacacttccaggccctgtgggagct
gcagggcagaaaggggagcggggaaccccaggggagcgcggcccagccggaagcccggga
cttcagggtttccctggcatctctccgccatccaacatatccgggccacctggtgatgta
ggggcaccaggaatatttggcttagaaggctaccgaggccctccaggcccacctgggtca
gatgcactccctggcatcaaaggcgacgaggggacctccggagctgcaggactgcctggg
gagaaaggatgggttggagacccagggccccagggccagcctggtgtcgttggtcttcca
ggggagaaagggcctaggggtgagcaaggattcatgggcaaccctggaccctctgggaac
gtgggtgacaggggccccaaaggacccaaaggagaccaaggattcccaggcgctcctggc
tccatgggatctccaggcattccaggcatcccccagaagatcgccacccagcctgggacc
atgggtccccagggcaggagaggccttcccggtgcacagggagagatgggacctcagggc
cctccaggagatccagggttccgtggggctccaggcaaggctgggccccagggcagagga
ggtgtgtctgctgttccggggttccggggagaccaagggcccatgggacagcagggccca
gtcggccaggaaggggagccaggccgtccagggagcccaggccttccagggatgccaggc
cgcagtgttagcatcggctacctcctggtgaaacacagccagacggaccaggagcccatg
tgtcctgtgggcatgaacaagctctggagtgggtacagcctgctgtacttcgagggccag
gagaaagcccacaaccaggacttagggctggcgggctcctgcctggctcgcttcagcact
atgccttttctgtactgcaacccgggtgacgtctgctactacgcgagccgcaatgacaag
tcctactggctgtccaccactgccccactgcccatgatgcccgtggccgaggaggaaatc
aagccctacatcagccgctgctctgtgtgtgaggctccagctgtggccattgccgtccac
agccaagatgtcacgataccccactgcccaaccgggtggcggagcttgtggatcggctat
tccttcctcatgcacacggcggctggggacgaaggtggcggccagtcactggtgtccccc
gggagctgtctggaggacttccgtgccacgcctttcatcgagtgtaacggaggccgcggg
acctgccactacttcgctaacaagtacagcttctggctgaccacaatccccgagcagaac
ttccagggcacgccgtcggccgacacactcaaggccggcctcatccgcacccacattagc
cgctgccaagtgtgcatgaagaacctgtaa
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