Peromyscus leucopus (white-footed mouse): 114695235
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Entry
114695235 CDS
T07241
Symbol
Smarca4
Name
(RefSeq) LOW QUALITY PROTEIN: transcription activator BRG1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03082
ATP-dependent chromatin remodeling
pleu04714
Thermogenesis
pleu05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
114695235 (Smarca4)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
114695235 (Smarca4)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
114695235 (Smarca4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pleu03021
]
114695235 (Smarca4)
03036 Chromosome and associated proteins [BR:
pleu03036
]
114695235 (Smarca4)
Transcription machinery [BR:
pleu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
114695235 (Smarca4)
Chromosome and associated proteins [BR:
pleu03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
114695235 (Smarca4)
Chromatin remodeling factors
BAF complex
114695235 (Smarca4)
PBAF complex
114695235 (Smarca4)
GBAF(ncBAF) complex
114695235 (Smarca4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Htt_C-HEAT
DUF2009
Motif
Other DBs
NCBI-GeneID:
114695235
NCBI-ProteinID:
XP_028728322
LinkDB
All DBs
Position
7:complement(50076009..50166846)
Genome browser
AA seq
1647 aa
AA seq
DB search
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPMPTQG
PGGYPQDNMHQMHKPMESMHEKGMPDDPRYNQMKGMGMRSGAHTGMGPPPSPMDQHSQGY
PSPLGGSEHASSPVPASGPSSGPQMSSGPGGXPLDGSDPQALGQQNRGPTPFNQNQLHQL
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGSGPGPGP
GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ
KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPLVPLHQKQSRITPIQKPRG
LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV
VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL
QHAKDFREYHRSVTGKLQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK
LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG
PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES
GSEEEEEEEEEEQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV
SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE
MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA
RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH
YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE
TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD
GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG
KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK
TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR
VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESR
HCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMD
LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS
DSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSEAGSSTPTTSTRSRDKDEESKKQ
KKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL
IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSV
RQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGS
RAKPVVSDDDSEEEQEEDRSGSGSEED
NT seq
4944 nt
NT seq
+upstream
nt +downstream
nt
atgtctactccagacccacccctgggtgggactcctcggcctggcccttccccaggtcct
ggcccctcacctggtgcaatgttgggccctagccctggcccctcaccaggctctgcccac
agcatgatggggcccagcccaggacctccttcggctggacaccccatgcccacccagggg
cctggaggttatcctcaggacaacatgcaccaaatgcacaagcctatggagtccatgcat
gagaagggaatgcctgatgacccacgatacaaccagatgaaagggatgggcatgcggtca
ggggcccacacaggtatgggacccccacctagtcccatggaccagcattcccaaggttac
ccctcacccctgggtggctctgaacatgcctccagtcctgtcccagccagcggcccatct
tcaggcccccagatgtcctctgggccaggggggngcccattagatggctctgacccccag
gccttggggcagcaaaaccgaggcccaactccatttaatcagaaccagctgcatcaactc
agagctcagataatggcctataagatgttggccagaggccaaccattgcctgaccacctg
cagatggccgtgcaaggcaagcgtccgatgcctggaatgcagcagcagatgccaacacta
cctccaccctcagtatctgccacaggacctggccctggctctggccctggtcctggccca
ggtccaggaccagcccctccaaattacagtaggccccatggtatgggagggccaaacatg
cctcccccaggaccctcaggtgtgccccccgggatgcctggtcagccccctggagggcct
cccaagccgtggcctgaaggacccatggccaatgctgctgcccccacaagcaccccacag
aagctgattcccccccaaccaacaggccgcccttcacctgcacctcctgctgtcccacct
gctgcctcacctgtgatgccaccacaaacacagtccccagggcagccggcccagcctgct
ccattggtgcccctgcaccagaagcagagccgcatcacccccatccagaagccccggggc
ctggaccctgtggagatcctgcaggagcgagagtataggctgcaggcgcgaatcgcacac
cgaattcaggaacttgaaaacctccctgggtccctggctggggacctgcgaaccaaagca
accatcgaactcaaggcccttaggttgctgaacttccagcggcagctgcgccaggaggtg
gtggtgtgcatgcgcagagacacagccctagagacagccctcaatgccaaggcctataag
cgcagcaaacggcagtcgcttcgggaggcccgaatcactgagaagctggagaagcagcag
aagattgagcaggagcgtaagcgccgccagaagcaccaggagtacctcaacagcatcctg
cagcatgccaaggacttcagggagtatcacagatcagtcacaggcaaactccagaaactg
accaaggctgtggccacctaccatgcaaatactgaacgggagcagaagaaagaaaatgag
cgtatagagaaggagcgaatgcggaggcttatggctgaagatgaggagggctaccgcaag
ctcatcgaccagaagaaggacaaacgcctggcctacctcctgcagcagacagacgagtat
gtggccaacctcacagagctggtgcggcagcacaaagctgctcaggtcgccaaggagaag
aagaagaaaaagaaaaagaagaaggcagaaaatgctgaaggacagacacctgctattgga
ccagatggtgagcctctggatgagacgagccagatgagcgaccttcctgtgaaggtgatc
catgtagagagtggcaagatcctcacaggcacagatgccccaaaagctgggcagctggaa
gcctggcttgagatgaacccagggtatgaagtggctcccaggtcagacagtgaagaaagc
ggctccgaggaggaggaggaggaggaggaggaggagcagcctcagcccgcacagcccccc
acactgcctgtggaggagaagaagaagattccagacccagacagcgatgacgtctctgag
gtggacgcgcgacacattattgagaacgccaagcaggatgtggatgacgagtacggtgtg
tcccaggcccttgctcgtggtctgcagtcctactatgctgtggcccatgctgtcacagag
agagtagacaagcagtcagccctcatggtcaacggcgtcctcaaacagtaccagatcaag
ggcttggagtggctggtttccctgtataacaacaacctgaatggcatcctggctgatgag
atggggctgggaaagaccatccaaaccatcgcgctcatcacatacctcatggagcacaag
cgtatcaacgggcccttcctcatcattgtgcctctctcgacgctgtcaaactgggcatat
gaattcgacaagtgggccccctcagtggtgaaggtttcctacaagggctctccagcagca
agacgagctttcgtcccccagcttcgcagtgggaagttcaatgtcttgttgaccacctat
gagtatatcatcaaagacaaacatatcctggccaagatccgctggaagtacatgattgtg
gatgaaggccaccgcatgaagaaccaccactgcaagctgacccaggtcctcaacacacac
tacgtggcccctcggcgcttgcttctgacgggcactccactgcagaacaagctgcctgag
ctctgggcactgcttaacttcctgctgcccaccatcttcaagagctgcagcaccttcgaa
cagtggttcaacgccccctttgccatgacaggagagaaggtggacctgaatgaagaggag
accatcctcattatccgtcgcctacacaaggtgctgcggcccttcctgctgcggaggctc
aagaaggaggttgaagcccagctacctgagaaggtggagtatgtcatcaaatgtgacatg
tcagccctgcagcgtgtgctctaccgtcacatgcaggccaaaggtgtgctgttgactgat
ggctctgagaaggacaagaagggcaaaggtggcaccaagacgctgatgaacactatcatg
cagctgcgcaagatctgcaaccacccctacatgttccagcatattgaggagtccttttct
gagcacttggggttcaccggcggcatcgtgcaaggattggacctgtaccgtgcctcaggg
aaatttgaacttcttgatagaattctacccaaactccgtgcaacaaaccacaaagtgcta
ctcttctgccaaatgacctccctcatgaccattatggaagactactttgcataccgtggc
ttcaaatacctcagacttgatggaaccacaaaagcagaggaccggggcatgctgctgaaa
acctttaatgagcctggctctgagtacttcattttcctgctcagcacccgtgctgggggg
ctgggcctcaacctgcagtcagctgacactgtgatcatctttgacagtgactggaatcct
caccaggacctgcaagcacaggatcgtgcccatcgaattgggcagcagaatgaggtgcgt
gtgctccgcctgtgcaccgttaacagtgtggaggagaagatcctggccgctgccaaatac
aaactcaatgtggaccagaaggttatccaggcaggcatgtttgaccagaagtcatccagc
catgagcggcgcgccttcctgcaggccattctggagcatgaggagcaggatgagagcaga
cactgcagcacgggcagcggcagtgccagcttcgcccacactgcccctccgccagcgggc
gtcaaccccgacttggaggagccacctctaaaggaggaagatgaggtacctgatgatgag
accgtcaaccagatgattgcccggcacgaagaagaatttgacctcttcatgcgcatggac
ttagaccgccggcgtgaagaggcccgcaaccccaagcggaagccacgcctgatggaagaa
gatgagctcccatcctggatcatcaaggatgatgccgaggtagagaggctgacatgtgag
gaggaagaggagaagatgtttggccgtggttctcgccaccgcaaggaggtggactacagc
gactcactgacagagaagcagtggctcaaggccatcgaggagggcacgctggaggagatc
gaagaggaggtccggcagaagaaatcctcacgcaagcgcaagcgggacagcgaggccggc
tcctccaccccgaccaccagcacccgcagccgtgacaaggacgaggagagcaagaagcag
aagaagcgtggacggccacctgccgagaagctgtccccaaacccacctaaccttaccaag
aagatgaagaagatcgtagacgctgtgatcaagtacaaggacagcagtagtggacgtcag
ctcagcgaggtgttcatccagctgccctcgcgcaaggagcttcccgagtactacgagctc
atccgaaagcctgtggacttcaagaagatcaaggaacgcatccgcaaccacaagtaccgc
agcctcaatgacctggagaaggatgtgatgctgctgtgccagaatgctcagacgttcaac
ctcgagggttccttgatctacgaggactccatcgtcctgcagtctgtcttcaccagtgtg
cggcagaagatcgagaaggaggatgacagtgaaggggaagaaagtgaagaggaagaggag
ggtgaggaggaaggctccgagtctgagtcccgctctgtcaaggtaaagatcaagctgggc
cgcaaggagaaggcccaggaccgactgaaggggggccgccggcggccaagccggggatcc
cgggccaagccagttgtgagcgacgacgacagtgaggaggaacaggaagaggaccgctca
ggaagtggcagcgaggaggactga
DBGET
integrated database retrieval system
