Peromyscus leucopus (white-footed mouse): 114695385
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Entry
114695385 CDS
T07241
Symbol
Pdzrn3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pleu04121
]
114695385 (Pdzrn3)
Enzymes [BR:
pleu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114695385 (Pdzrn3)
Ubiquitin system [BR:
pleu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
114695385 (Pdzrn3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
Sina_ZnF
zf-C3HC4_3
zf-TRAF
zf-C3HC4_4
zf-RING_5
TRAF3_RING
Prok-RING_4
PDZ_Tricorn
zf-rbx1
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
114695385
NCBI-ProteinID:
XP_028728543
LinkDB
All DBs
Position
3:complement(117365675..117596306)
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AA seq
1063 aa
AA seq
DB search
MGFELDRFDGDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRL
SAKELNHVLPLKRLILKLDIKCAHAARGCGRVVKLQELPEHLERCDFAPARCRHAGCGQL
LLRRDVEAHMRDACDARPVGRCQEGCGLPLTHGEQRAGGHCCAGALRAHNGALQARLGAL
HKALKKEALRAGKREKSLVAQLAAAQLELQMTALRYQKKFTEYSARLDSLSRCVAAPPGG
KGEETKSLTLVLHRDSGSLGFNIIGGRPCVDNQDGSSSEGIFVSKIVDSGPAAKEGGLQI
HDRIIEVNGKDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKMFTPASESQLVDTGTQT
DITFEHIMALTKMSSPSPPVLDPYLLPEEHPSSHEYYDPNDYMGDIHQDMDREELELEEV
GLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN
REEAVALLTSEENKNFSLLIARPELQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTA
SVLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDESTRNDESSEQENNGEDATASSNPL
AGQRKLTCSQDTLGSGDLPFSNESFISADCTDVDYLGIPVDECERFRELLELKCQVQSSN
PYSLYYPSSPVDTAAKSDPESVDKELELLNEELRSIELECLSIVRAHKMQQLKEQYRESW
MLHHSGFRNYNTSVDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNSL
RRVAEGSSEGAAASIEAYRPSPKNLLAITEDPEVSTPNYSPSAKELDPSQALESKERRVS
DGSRSPTASPKLGSAYLPSYHHSPYKHAHIPAHAQHYQSYMHLIQQKSAVEYAQSQMSLV
SMCKDLNSSNSAEPRMEWKVKIRSDGTRYITKRPVRDRLLRERALKIREERSGLTTDDDA
MSEMKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLDCLKEQQAADDRKEMNILELSHK
KMMKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgggtttcgagttggaccgcttcgacggagacgtggaccccgatctgaagtgcgcgctg
tgtcacaaggtcctggaggacccgctgaccaccccgtgtggccacgtcttctgcgccggc
tgcgtgctgccctgggtcgtacaggagggcagctgccccgcgcgttgtcgcggtcgcctc
tcggccaaggagctcaaccacgtcctgccgcttaagcgcctcatcctcaagttggacatc
aagtgcgcgcacgcggcgcggggctgcggccgggtggtcaagttgcaggagctgcccgag
cacctggagcgctgcgacttcgcgcccgcccgctgccgccacgcgggctgcggccagctg
ctgctgcgacgcgacgtggaggcccacatgcgcgacgcgtgcgacgcgcggcccgtgggc
cgctgccaggagggctgcgggctgccgctgacgcacggcgagcagcgcgcgggcggccac
tgctgcgcgggggctctgcgggctcacaacggcgcgctgcaggcccgcctgggcgcgctg
cacaaggcgctcaagaaggaggcgctgcgggccggcaagcgcgagaagtcgctggtggcg
cagctggccgccgcgcagctcgaactgcagatgaccgcgctgcgctaccagaagaagttc
accgagtacagcgcgcgcctcgactcgctcagccgctgcgtggccgcgccgcccggcggc
aagggtgaagagaccaaaagcctgactctcgtcctgcatcgggactccggctccctggga
ttcaatattattggcggccggccctgtgtggacaatcaagatggatcctccagtgaagga
atctttgtatccaaaatagtcgacagtgggccggcagccaaggaaggaggcctgcaaatt
cacgacaggattattgaggtcaacggcaaagacttatcccgagcaactcatgaccaggct
gtggaagctttcaagacagccaaggagcccatcgtggtacaagtgttgaggaggacacct
cgaaccaaaatgttcactcctgcctcagagtcacagctggtagacacaggcacccaaacc
gacatcaccttcgagcacatcatggccctgaccaagatgtcttctcccagcccacctgtg
ttggatccttacctgctgcctgaagagcacccctcatcccatgaatactatgatccgaat
gactacatgggggacatccatcaggacatggacagggaagagctggagctagaggaagtg
ggcctctacaggatgaacagccaggacaagttgggcctcaccgtgtgctaccggacagat
gacgaagatgacatagggatttacataagtgagatcgaccctaacagcattgcagccaag
gatggacgcatccgtgaaggagaccgcatcatccagattaatgggatagaagtgcagaac
cgtgaagaggcagtggctcttctaaccagtgaagaaaacaagaacttttcgttgctgatt
gcaaggcctgaactccagctggacgagggctggatggatgacgacaggaatgactttctg
gatgacttacacatggacatgcttgaggagcagcatcaccaggccatgcagttcacagcc
agtgtgctccaacagaagaagcatgaggaagatggtggaaccacagacacggccaccatc
ttatccaaccagcacgagaaagacagcggcgtgggtcggacggatgagagcacccgcaac
gacgagagctccgaacaggagaacaacggtgaagacgccacggcgtcctccaacccgctg
gcgggccagaggaagctgacctgtagccaggacaccctaggcagtggcgacctgcctttc
agcaatgaatccttcatctctgcggactgtaccgacgtggactacctgggcatcccagta
gacgagtgtgagcgtttccgcgagctgctggagctcaagtgtcaggtgcagagcagcaac
ccctacagcctgtactaccccagcagcccggtggacacggctgccaagagcgacccggag
agtgtggacaaggagctggagctcctcaacgaggagctgcgcagcatcgagctggagtgc
ctgagcatcgtgcgtgcgcacaagatgcagcagctgaaggagcagtaccgcgagtcctgg
atgctgcaccacagtggcttccgcaactacaacaccagcgtggacgtgcgccgccatgag
ctctcggacatcactgagctgcccgagaagtcagacaaggatagctcgagcgcctacaac
accggggagagctgccggagtaccccactcaccctggagatctccccagacaactccttg
cggagggtggctgagggaagtagcgaaggggccgcggccagcatcgaagcttacaggcca
tcccccaagaacctgctcgccatcactgaggaccctgaagtaagcacccccaactacagc
cctagcgccaaagagctggaccccagccaggccctggagagcaaagagcgccgagttagc
gatggcagcaggagccccaccgccagcccaaagctgggcagtgcctacctgccctcatac
caccactccccgtacaagcacgcgcacatcccagcgcacgcgcagcactaccagagctac
atgcacctgatccagcagaagtcagccgtggagtatgcgcaaagccagatgagcctggtg
agcatgtgcaaggacttgaactcctctaactcggccgaacccaggatggagtggaaagtg
aagatccgcagcgacgggacacgctacattaccaaaaggccggtgcgtgaccggctgctg
cgggagcgtgcgctgaagatccgggaggaacgcagcggcctgaccaccgatgacgacgcc
atgagtgagatgaagatggggcgctactggagcaaggaggagcgcaaacagcatctggtg
aaggccaaggagcagagaaggaggcgcgagtttatgatgcagagcaggctggattgtctg
aaggaacagcaggcggccgacgacaggaaggagatgaacatcctggaactgagccacaaa
aagatgatgaagaagaggaacaaaaagatctttgacaattggatgaccatccaagaactc
ttaacccacggcacaaaatcgccagacggcactagggtatacaattccttcctgtcggtg
actactgtgtaa
DBGET
integrated database retrieval system
