Peromyscus leucopus (white-footed mouse): 114695940
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Entry
114695940 CDS
T07241
Symbol
Pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114695940 (Pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pleu03021
]
114695940 (Pcf11)
03019 Messenger RNA biogenesis [BR:
pleu03019
]
114695940 (Pcf11)
Transcription machinery [BR:
pleu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114695940 (Pcf11)
Messenger RNA biogenesis [BR:
pleu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
114695940 (Pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
SelA
Motif
Other DBs
NCBI-GeneID:
114695940
NCBI-ProteinID:
XP_028729297
LinkDB
All DBs
Position
1:112229306..112254796
Genome browser
AA seq
1679 aa
AA seq
DB search
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESSTPGTVV
SSPSISTPPIVPDIQKNLTQEQIIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETANLGPGSAPSKLHVSQIPTMAVKTPHQVSVQPDKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKEQSHRKEFVMNTLNPSDIKTSKTVPSEKLNSSKQEKSKSSERITKKELDQ
LDSKSESKSPLKNKLSHPKDLKNQESESMRLSDMNKRDPRLKKHLQDKAEGKDEDVKEKR
KTAEKKDKDEHMKSSEHRLIGSRSKIINGIVQKQDMVTEELEKQGTKPGRSSTRKRSRSR
SPKSRSPIIHSPKRRDRRSPKRRQRSMSPTLAPKAGKMRQSGLKQSHMEEFPPPSREERN
VKRSTKQDVRDPRRLKKMDEDRPQETASQHSMKSGAEPKENIENWQSSKSAKRWKSGWEE
NKSLQQGDEHSKPPHLRHRESWSSTKGILSPRTPKQQHRLSVDANLQIPKELTLASKREL
LQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKPLLSD
AELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASRNSGA
QFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFNDRFPL
KRPRYEDSDKPFVDGPASRFAGLDTNQRLTALAEDRPLFDGPGRPSVTRDGPAKMIFEGP
NKLSPRIDGPPTPGSLRFDGSPGQMGGGGPMRFEGPQGQLGGGCPLRFEGPPGPVGTPLR
FEGPIGQGGGGGFRFEGSPSLRFEGSTGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEG
PHGQPVGSLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGAIRFEGPLLQQGV
GMRFEGPHGQSVAGLRFEGHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPVP
GGGLRIEGPLGQGGPRFEGCHSLRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGPQRF
DGPPGQQVQPRFDSVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESFNQTGPYND
PPGNAFNVPSQGLQFQRHEQIFDTPQGPNFNGPHGPGNQNFPNPLNRASGHYFDEKNLQS
SQFGNFGNLPTPMSVGNIQTSQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFIQNPSGGLP
KAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATAQVNEAVAQPPPEEEEDQNEDQDVP
DLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVS
RKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGP
AGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSK
TPVENPLNIMLNIVKNELQEPCESPKVKEEQIDAPPACSEESVVTPTEIKTENDTVESV
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggggctgcgggggcccgggaggacgcctgtcgg
gattatcagtcgtcgctggaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccttggatgtcagagtcaattca
ttagatcctgcttggcctattaaacctctgccccctaatgtgaatacatctagcatccat
gtgaacccgaaatttttaaataaatcgcctgaggagtcttcaacccctggcacagtggtc
agttcccccagtatctccactcctccgattgtacctgacatacaaaagaatcttactcaa
gaacaaataataaggcaacagttgcttgcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagcttgagttagaacaagctaaggcacaattggcagtatctcttagcgtt
cagcaggagacagccaacttgggtcctggatcagcaccatctaaattacatgtttcacaa
attcccactatggctgttaaaactccccatcaggtttctgtgcaacctgacaaaagccga
ccgggtccatccttacaaattcaagacttgaaaggcactaaccgggatccccgtcttaac
aggatgagccaacattcttcccatggcaaagaacagagtcataggaaggaatttgtaatg
aacacattaaatccgtctgatattaaaacaagtaaaactgtaccctctgaaaaactaaat
tcatccaagcaagaaaaaagtaaatcaagtgaaagaataaccaagaaagaacttgaccaa
ttagattctaaatctgaatctaaatcacctttgaaaaacaaattatcccaccccaaagac
ttgaaaaatcaagaatctgaaagtatgaggttgtctgatatgaacaagagagatccacga
ttaaaaaagcatcttcaggataaagctgagggcaaagatgaagatgtaaaagaaaagaga
aaaactgcagaaaagaaggataaagatgagcacatgaaatcatctgaacatagactgatt
ggaagtagaagtaaaatcataaatggcattgtgcaaaaacaggacatggttacagaagaa
ttggaaaaacaggggacaaaaccagggagatcaagtactcggaagagatcaagatcgagg
tcacctaagtctcggtcaccaattatacattccccaaagagaagagatagacggtcaccc
aaacgaaggcaaagaagtatgtctccaactttggcccccaaagctggaaagatgcgtcag
tcaggacttaaacagtcacatatggaggagttcccaccaccttctagggaagaaagaaat
gttaagagaagtactaagcaggatgttcgagatcccagacggctgaaaaagatggatgag
gatcggccgcaagaaactgcaagtcaacattctatgaagtcaggtgctgaaccaaaagaa
aatatagagaattggcaaagctccaagtctgccaaaagatggaaatctggttgggaagaa
aataaaagcttacaacagggtgatgaacatagtaaaccacctcatctaaggcatagggag
agctggtcaagcactaaaggaatcttgtcacctcgaaccccaaagcagcaacatcgatta
agtgtagatgccaatcttcagattcctaaagagttaactcttgcaagcaaaagagaatta
cttcaaaagacgagtgaacgtttagcttctggtgaaattacacaggatgagttccttgtt
gttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacatagatgcaatgta
cgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacctctcttatctgat
gctgaattaacctactatgaacataaagcaaaactgaaaaggacacaggttcagcattca
tttccaagacttgatctcttagatcctgatatttttgactaccctttgactgatgccttg
ttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtaggaatagtggagca
cagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttctcctatatctggg
agtcgtacttatgctgagaatctttcaccccatgagggccggagaagacatgacgagcaa
gtctctgctaaaggtgtacgagaggagcagagatctccattcaatgatcgttttccactt
aaacgacctagatatgaagattcagataaaccatttgtagatggtcctgcatcaagattt
gctggccttgatacaaatcagcggcttacagctttagctgaagaccgaccattatttgat
ggacctggtaggccatctgtgacgcgagatggcccagccaagatgatttttgaaggacct
aataaattaagccctagaattgatggacctcctacaccaggttctcttcggtttgatggg
tcaccaggacaaatggggggaggaggccctatgagatttgaaggaccacaaggtcagtta
ggaggtgggtgccctttgagatttgaaggtcctccaggaccagtaggaacacctctgcgg
tttgaagggccaattggtcaaggaggaggaggcggttttcgatttgaaggttcacctagt
ctgaggtttgagggatctacaggtggtttgcgatttgaaggaccagggggtcagcctgtg
ggtggtctcaggttcgaaggacatcgtggtcaacctgtgggtggtctgaggtttgagggc
cctcatggacagcctgtgggcagtcttagatttgataatcctcgaggtcagcctgtaggt
ggacttagatttgaggggggtcatggtccatcaggggcagcaattaggtttgatgggcct
catggtcagccaggtggtggcgctattagatttgagggccctttgctacagcaaggagtt
ggaatgaggtttgagggtccccatggtcagtctgtagctggtctgagatttgaaggacat
aatcaactaggtgggaaccttaggtttgagggaccacatggccaaccaggggttgggatc
aggtttgaaggacctttagttcaacaaggaggtggaatgaggtttgagggtcctgtacca
ggaggtggcctgagaattgaagggcctctgggtcaaggtggtccaagatttgaaggttgt
cactctttaaggtttgatggccagccaggccagccatcacttttgccaagatttgatgga
ttacatggccagccaggtcctagatttgaaagaactggtcagccaggtccacagagattt
gatgggccacctggacagcaggttcaaccaagatttgatagtgtacctcaaagatttgat
gggccacaacaccagcaagcatcaagatttgatattcctcttggtctgcaaggtacccga
tttgacaatcatccttcacaaaggcttgaatctttcaatcagactggcccatataatgat
ccacctggcaatgcttttaatgttccatctcaaggactacagttccaaagacacgaacaa
atatttgatacacctcaaggaccaaattttaatggaccgcatggccctggaaaccagaat
ttcccaaatccccttaacagagcttcaggacactattttgatgaaaagaatcttcagagt
tctcagtttggaaacttcggcaatttaccaactccaatgtcagtaggaaatattcagaca
tctcaacaggttctgactggtgttgctcaaccagtagcatttggccaaggacaacaattt
ttaccagttcatccacagaatcctggagcttttattcaaaatccttcaggaggtcttcct
aaggcatatcctgataatcatctcagtcaggtggatgtaaatgaattgttttcaaaactg
ctaaaaacaggaattctcaaattgtcacagcctgattcagctacagcacaggtaaatgag
gctgttgctcagcctccccctgaagaggaggaggatcagaatgaagatcaagatgttcca
gatcttactaattttacaattgaagaattgaagcaacgttatgacagtgttataaaccgg
ctatacactgggattcagtgttactcttgtggaatgaggtttacgacatcccagacagat
gtttatgcagatcacttggactggcattatcggcaaaatagaactgaaaaagatgttagc
agaaaagtcactcatagacgttggtactacagtttaacagactggatagaatttgaagaa
atagctgatttggaagaacgtgcaaaaagccagttttttgaaaaggttcatgaagaggtt
gtcctcaaaactcaggaggctgctaaagaaaaggagttccaaagtgttcctgctggacca
gctggagcagttgagagttgtgaaatctgtcaagagcaatttgaacaatactgggatgaa
gaggaggaggaatggcacttaaaaaatgctattagagtagatggaaagatttaccatcca
tcgtgttatgaagattatcaaaatacatcttcttttgattgtacaccatctcccagcaag
acaccagttgaaaaccctttgaacattatgttgaacattgtcaaaaacgaattacaagaa
ccctgtgaaagtcccaaagttaaggaagagcaaattgatgccccaccagcctgttctgaa
gaaagtgtagtaacacccactgaaattaaaacagaaaatgatacagttgagtcagtttaa
DBGET
integrated database retrieval system
