Peromyscus leucopus (white-footed mouse): 114696517
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Entry
114696517 CDS
T07241
Symbol
Col6a2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu04151
PI3K-Akt signaling pathway
pleu04510
Focal adhesion
pleu04512
ECM-receptor interaction
pleu04820
Cytoskeleton in muscle cells
pleu04974
Protein digestion and absorption
pleu05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
114696517 (Col6a2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114696517 (Col6a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114696517 (Col6a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114696517 (Col6a2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
114696517 (Col6a2)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
114696517 (Col6a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pleu04147
]
114696517 (Col6a2)
00536 Glycosaminoglycan binding proteins [BR:
pleu00536
]
114696517 (Col6a2)
Exosome [BR:
pleu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
114696517 (Col6a2)
Glycosaminoglycan binding proteins [BR:
pleu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114696517 (Col6a2)
Hyaluronan
Extracellular matrix or blood plasma proteins
114696517 (Col6a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Ins134_P3_kin_N
Motif
Other DBs
NCBI-GeneID:
114696517
NCBI-ProteinID:
XP_028730119
LinkDB
All DBs
Position
16_21:19154428..19182455
Genome browser
AA seq
1026 aa
AA seq
DB search
MTTIKMFQGSFSVFLLGGLLGVLHAQQQEVISPDPSIVDRNNNCPEKADCPVNVYFVLDT
SESVAMQSPTDSLLYHMQQFVPQFISQLQNEFYLDQVALSWRYGGLHFSDQVEVFSPPSS
DRASFTKSLQGIRSFRRGTFTDCALANMTQQIRQHVGRGVVNFAVVITDGHVTGNPCGGI
KMQAERAREEGIRLFAVAPNRNLNEQGLRDIANTPHELYRNNYATMRPDSTEIDQDTINR
IIKVMKHEAYGECYKVSCLEIPGPHGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEGP
IGFPGPKGVPGFKGEKGEFGSDGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDPGSRGP
DGYPGEAGSPGEQGDQGAKGDSGRPGRRGPPGDPGDKGSKGYQGNNGAPGSPGVKGGKGG
PGPRGPKGEPGRRGDPGTKGGPGSDGPKGEKGDPGPEGPRGLAGEVGSKGAKGDRGLPGP
RGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGTPGEKGEAGPP
GPEGGRGDFGLKGAPGRKGDKGEPADPGPPGEPGPRGPRGVPGPEGEPGPPGDPGLTECD
VMTYVRETCGCCDCEKRCGALDVVFVIDSSESIGYTNFTLEKNFVINVVNRLGAIAKDPK
SETGTRVGVVQYSHEGTFEAIRLDDERVNSLSSFKEAVKNLEWIAGGTWTPSALKFAYNQ
LIKESRRQKTRVFAVVITDGRHDPRDDDLNLRALCDRDVTVTAIGIGDMFHETHESENLY
SIACDKPQQVRNMTLFSDLVAEKFIDDMEDVLCPDPQIVCPELPCQTELYVAQCTQRPVD
IVFLLDGSERLGEQNFHKARRFVEEVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAFP
LTYNLTTIHEALERTAYLNSFSHVGAGIVHAINNVVRGARGGARRHAELSFVFLTDGVTG
NESLEESVHSMRKQNVVPTVVAVGSDVDMEVLTKISLGDRAAIFREKDFDSLAQPSFFDR
FIRWIC
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgactactatcaagatgttccagggttctttttctgtgttcctgcttgggggcctctta
ggagtcctccatgctcagcagcaggaagtcatctcacctgacccctccatcgttgacagg
aacaacaactgtccagagaaggctgactgcccagtcaatgtgtacttcgtgttggacacc
tcggagagcgtggccatgcagtcccccacagacagcctgctttatcacatgcagcagttc
gtacctcagttcatcagccagctgcagaacgaattttacctggaccaggtggcgctgagc
tggcgttacggtggcctgcacttctcggaccaggtggaggtattcagccccccaagcagc
gaccgggcctccttcacaaagagcctccaaggcatccgctccttccgcagaggcaccttt
actgactgtgccctggccaacatgacccagcagatccggcagcatgtcggccgaggtgtg
gtcaactttgctgtggtcatcaccgacggccacgtcacgggcaatccgtgtggaggcatt
aaaatgcaggctgagcgcgcccgcgaggagggcatccggctctttgccgtggcccctaac
aggaacctaaatgaacaaggcctgagggacatcgctaacaccccacatgagctctaccgc
aacaactatgccaccatgaggcccgactctaccgagattgaccaggacaccatcaaccgc
atcatcaaggtcatgaaacatgaagcctacggagagtgctacaaagtgagctgcctggag
attcctgggccccatggacccaagggctaccgcggacagaagggtgccaagggcaacatg
ggtgagccaggagagcctggacagaaggggagacagggagaccctggcatcgaaggcccc
attggattcccaggacccaagggtgtgcccggcttcaagggagagaagggtgaatttgga
tcagatggccggaagggagcccccggcctagctggcaagaatggaactgatggacagaag
ggcaaactgggccgaattggacctcctggctgcaagggagacccaggaagccggggccct
gatggataccctggagaagccggaagcccaggcgagcaaggagaccaaggtgccaagggg
gactctggccgcccgggacgcaggggaccaccaggagaccctggagacaagggaagcaag
ggatatcaaggcaacaacggagctcctggaagcccgggagtgaaaggaggcaagggaggg
cctggcccccgtggaccaaaaggagagccggggcgcaggggagatcctggaaccaagggc
ggcccgggcagcgacggtccaaagggggagaagggtgaccctggtcctgaggggccccga
ggcctggctggagaagttggcagcaaaggagccaagggagacagaggtttgcctggaccc
agaggcccccagggggctcttggggagccaggaaagcagggatctcggggagaccccggt
gatgctggacctcgtggagattcaggacagccaggtcccaagggagatcctggaaggcct
ggattcagctacccaggaccccgagggacacccggtgaaaaaggagaggccggcccacca
ggccctgagggaggccgaggagactttggtctgaaaggcgcacccggaaggaagggagac
aagggcgagccagctgatcctggtccccctggtgaacctggccctcgggggccaagagga
gtcccaggacctgagggagaacccggcccaccaggagaccctggtctcacggaatgtgac
gtcatgacctatgtgagagagacctgtgggtgctgcgactgtgagaagcgttgtggtgct
ctggatgtggtcttcgtcatcgacagctctgagagtattggctacaccaacttcaccctg
gagaagaacttcgtcatcaatgtggtcaacaggctgggtgccattgccaaggaccccaag
tctgagacaggcacgcgtgtgggtgtggtgcagtacagccacgaaggcactttcgaggcc
atccggctggacgacgagcgagtcaactccctgtccagcttcaaggaggccgtcaaaaac
cttgagtggattgctggtggcacgtggacgccctctgccctcaagtttgcctacaatcag
ctcatcaaggagagccggcgccagaagacccgggtgttcgcagtggtcatcacagatggg
cgccatgacccccgagatgatgacctcaaccttcgggcactgtgtgaccgagacgtcact
gtgacagccatcggcatcggtgacatgttccatgagacacacgagagcgagaacctctac
tccattgcctgtgacaagccgcagcaagtgcgtaacatgacactcttctctgacctggtg
gctgagaagttcatcgatgacatggaagatgtcctttgcccagacccccagatcgtgtgt
ccagaacttccctgccaaacagagctctacgtggcccagtgcacacagaggcccgtggac
attgtcttcctgctggatggctcggagcggttgggcgagcagaacttccacaaggcacgg
cgcttcgtggaggaggtgtcacggcgcctgactctggcgcgaagggatgacgacccactc
aatgcgcgcatggccctgctgcagtatggcagccagaaccagcagcaggtggccttcccg
ctgacctacaacttgaccaccatccatgaggcgctggagagaactgcctacctcaattcc
ttttctcacgtgggtgcaggcatcgtgcatgccatcaacaatgtggtgcggggggcacgg
ggcggggcgcggcgtcacgccgagctctcctttgtcttcctcacggatggtgtcacgggc
aacgaaagcctggaggagtcggtgcactccatgcgcaagcagaatgtggtgcccaccgtg
gtcgccgtgggcagtgatgtggacatggaggtgcttaccaagatcagcctgggtgacagg
gcggccatcttccgggagaaagactttgacagtctggcccagcccagcttcttcgacagg
ttcatccgctggatctgttag
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