Peromyscus leucopus (white-footed mouse): 114696524
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Entry
114696524 CDS
T07241
Symbol
Col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X5
KO
K06823
collagen type XVIII alpha
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
114696524 (Col18a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pleu04147
]
114696524 (Col18a1)
00535 Proteoglycans [BR:
pleu00535
]
114696524 (Col18a1)
00536 Glycosaminoglycan binding proteins [BR:
pleu00536
]
114696524 (Col18a1)
Exosome [BR:
pleu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
114696524 (Col18a1)
Proteoglycans [BR:
pleu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
114696524 (Col18a1)
Glycosaminoglycan binding proteins [BR:
pleu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114696524 (Col18a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
114696524
NCBI-ProteinID:
XP_028730136
LinkDB
All DBs
Position
16_21:18619678..18731988
Genome browser
AA seq
1528 aa
AA seq
DB search
MAPDPSRRLWLLLLLPLLLFCCLEPARADGNSLNPLNPLNPLVWLWPTKTDDPVSEPQIS
SPVQLTESPATHVVPQDGLTEQQTIPPDPKLPLEDQQAGQSGTPTTQVIPTPPTTTTMAS
AASPDTKEENVAGVGAKILNVAQGIRSFVQLWDEDMAAENSAGMEASASPFTTSLLTPTE
LSSRPREGETTLWLSSGVPSSPDVQTTEAGALAVPTQPPPSLSSLQAPLRGPSVPPAPPE
NVAEEVGLLQLLGDPLPHQISQVDDPHVGPAYVFGPDSSSGQVAQYHFPRLFFRDFSLLF
SVQPATKAAGVLFAITDAAQTVVSLGVKLSGVQDGHQNISLLYTEPGASQTQTGASFRLP
AFVGQWTHFALSVDGAFVALYIDCEEFQRVPLARSPQGLELERDSGLFVGQAGAADPDKF
QGMISELKVRNNPRVSPVHCLDEDDDDEDRASGDFGSGLEESSKPPREEDTSSAPRLPQP
PPVTSPPLAGVSTTQDARTEGTEEETTVDSVGAERLPGTDSSNAWSENVQNHGGDLIKGG
LKGQKGEPGAQGLPGPAGPQGPAGPVVQSPNAQPGAQGPPGPQGPPGKDGAPGRDGEPGD
PGEDGRPGDTGPQGFPGTPGEVGPKGEKGDPGVGPRGPPGPPGPPGPSFRQDKLTFIDME
GSGFSGDLESLRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSYAPGPAGLPGVPGKEGPPG
FPGPPGPPGPPGKEGAPGAAGQKGSAGDVGIPGPKGSKGDLGPVGVPGKTGMAGPPGPTG
PPGPPGPPGPPGPGFAAGFDDMEGSGIPFWSTARSSDGLQGPPGLPGLKGDPGVSGPPGI
KGEVGADGAQGIPGLPGREGAAGPPGLKGEKGSQGEKGDPGKDGVGLPGLPGPPGPPGPV
VYVSNEDRAVVSTPGPEGKPGYAGFPGPAGPKGDLGSKGEQGPPGPKGEKGEPGAIFGPD
GRALGHAQKGAKGEQGFRGPPGPYGRPGHKGEIGFPGRPGRPGTNGLKGEKGEPGDASLG
FSMRGMPGPPGPPGPPGPPGMPIYDSNAFVESGRPGLPGQQGVQGPSGPKGDKGEVGPPG
PPGQFPIDFFNLGAEMKGDKGDRGDAGQKGERGEPGAAGGGFFSSGVPGPPGPPGYPGIP
GPKGESIRGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTVSVPGPPGPPG
PPGPPGAMGASAGVRIWATYQTMLDKVREVPEGWLIFVAEREELYVRVRNGFRKVLLEAR
TIHPHGTGNEVAALQPPLVQLHEGSPYTRREHPYSTARPWRADDILANPPRLPDPQPYPG
VPHHHNSYAHLPPPPPARPTRSPAHTHQDFQPVLHLVALNSPLSGGMRGIRGADFQCFQQ
ARAVGLTGTFRAFLSSRLQDLYSIVRRADRGSLPIVNLKDEVLSPSWDALFSGSQGQLQP
GARIFSFDGRDVLRHPAWPQKSVWHGSDPSGRRLMESYCETWRTEASGVTGQASSLLSGR
LLEQKAASCHNTYIVLCIENSFMTSFSK
NT seq
4587 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaccccagcagacgcctctggctgctgctcctgctgccgctgctgctcttc
tgctgcctggagcctgccagggctgacgggaattccctgaatcccctgaaccccttgaat
cctctggtgtggctgtggcccaccaagaccgatgatccggtctccgagccccagatcagt
tcacctgtgcagctcacagagagcccggccacgcacgtggtcccccaggatggcctcaca
gaacagcagacgattcctcccgaccccaagctgcccctggaggatcagcaagctggccag
agtgggacccctacaacccaggtcatccccactcccccgacgacgacgacgatggcctct
gcggcaagcccagacacgaaggaggagaatgttgccggcgttggagccaagattctgaat
gtggctcagggcattcggagcttcgtccagctgtgggatgaggacatggctgctgagaac
tctgctgggatggaagcctcagcttcccccttcacaacatccctcctcacccctactgag
ctctccagccgcccccgggagggcgagaccactctctggctaagcagtggcgttccaagt
tctccagatgttcagacaactgaggctggcgcactggctgtgcccacccagccacctccc
tccctgagcagcctccaggcaccactgagaggaccctcagtgccaccagcacccccagag
aatgttgctgaggaggtggggctgctgcagctccttggggaccctctgccccatcagatc
tcacaagtcgacgaccctcacgtcgggccagcctacgtctttggaccggactccagcagt
ggccaggtggcccagtaccacttccctagactcttcttccgtgacttttcactcctgttt
agtgttcagccagccacgaaggccgcaggggtgctgtttgccatcacggacgccgcacag
accgtggtctcactgggtgtgaagctttcgggggtgcaagatggacaccagaacatctca
ctgctctacacggagcccggggccagccagacccagacaggggccagcttccgcctccct
gcatttgttggccagtggacacacttcgcgctcagcgtggatggagcctttgtggctctc
tacatagactgtgaagagttccagagggtgccgcttgctcggtccccacagggtctggag
ctggagcgtgactctggcctctttgtgggtcaggctggagcagctgaccctgataagttc
caggggatgatctcagagctgaaggtacgaaataacccccgggtgagccctgtccactgt
ttggatgaagatgacgatgatgaagacagggcatctggagactttggaagtggccttgaa
gaaagcagcaagcctcccagggaggaggacacatcctcagcacccaggcttccccagcca
cctcctgtcacctccccacccctggctggagtcagcaccacacaagatgctagaacagaa
ggaacggaggaagaaaccacggtagattctgtaggagctgagcgccttcctggcacagat
tcaagcaatgcatggagtgagaatgttcagaaccatggaggtgacttgatcaagggaggt
ctcaagggacaaaagggggagccaggtgctcagggcctacctggcccagcggggccccag
ggtcctgcaggcccagtggtacagagccccaatgcacaacctggagcacaaggacccccg
ggacctcaggggccaccagggaaggatggcgctccaggaagggatggcgaaccgggtgac
cccggtgaagatgggagaccgggtgacactggacctcagggcttcccagggactccagga
gaggtgggccccaagggtgagaagggagatcctggggttggacctcgagggcctccagga
cctccaggaccaccaggaccctccttcagacaggacaagctgaccttcattgacatggaa
ggatccggtttcagtggagatttggagagcctcagaggcccacgaggcttccctggcccc
ccaggaccccctggtgtcccaggactgcctggtgagccagggcgctttggggtcaacagc
tcctacgctccaggacctgcaggtcttcctggtgtgcctgggaaggaagggccccccgga
tttcctggtcccccgggacctccaggtcctccaggcaaagagggcgcaccaggagcggct
ggccagaaaggcagcgctggcgatgtgggaatcccaggacccaaggggagcaaaggagac
cttgggcctgtcggtgtacctggaaagactggcatggctggaccccctgggccaactggg
cccccaggacccccaggaccccctgggccaccaggaccgggatttgctgctggattcgat
gatatggaaggctctgggatacccttctggtcaacagcccgaagctccgatgggctgcag
ggacctccagggttgccaggactcaagggtgatcctggagtgtcagggccgcctggaatc
aagggagaagtcggagcagatggagcccagggcatccctggcctcccaggaagagaaggt
gcagctgggcccccgggactgaaaggagagaaagggagccagggagaaaagggagaccca
ggaaaagatggagtggggctaccaggcctccctggccccccaggacctccagggcctgtg
gtctatgtgtcgaatgaggatagagcagtagtgagcacgccaggacccgagggcaagcca
ggatatgcaggctttcccggacctgccgggccaaagggtgacctgggttccaaaggcgag
cagggccctccagggcccaagggtgagaagggagagccaggcgctatctttggccccgat
ggcagagccctgggccacgcccagaaaggagccaagggagaacaaggctttcgaggaccg
ccgggtccttatgggcgacccgggcacaagggtgaaatcggcttccctggacggccgggt
cgtcctggaacaaatggattaaagggagagaaaggggagcctggagatgccagccttggg
ttcagcatgaggggaatgcctggcccccctggccctccaggccccccaggtcctcctggg
atgcccatctatgatagcaatgcatttgtggagtctggccgccctggactaccgggacag
caaggtgtgcaggggccttcaggaccaaagggtgacaaaggagaggtgggcccaccggga
cctccagggcagttccccatcgacttcttcaatctgggagctgaaatgaagggtgacaaa
ggggaccgaggggacgctggacagaaaggagagaggggagagcctggggcggctggtggt
ggattcttcagctcaggcgtgcctggaccacccggcccccctggctaccctgggattccg
ggtccaaagggagagagtatccggggcccacctggtcctcctggccctcagggacctcct
ggcattggctatgaggggcgtcagggccccccaggacctccagggcctccaggacctcca
tcgttccctggccctcataggcagactgtcagtgttcctggtcctccgggcccccctggc
cctccaggtcccccaggagccatgggtgcctctgctggggtgaggatctgggccacatac
cagaccatgctggacaaggtgcgtgaggtgcccgagggctggctcatctttgtggccgag
agggaagaactctacgtgcgtgttagaaatggcttccggaaggtgctgctggaggcccgg
acaatacacccacatgggacgggcaacgaggtagccgctctgcagccccctctggtgcag
cttcacgagggcagcccctatacccggcgggagcacccctactccacggctcggccctgg
cgggccgatgatatcctggccaacccaccgcgtctgccagacccacagccttaccccgga
gtgccacaccaccacaactcttatgcgcacctgccgccgccgccgccggcccgccccaca
cgctcacctgcccacactcaccaggacttccagccggtgctccacctggtggcactgaac
agcccgctgtcgggtggcatgcgtggcatccgtggggccgacttccagtgcttccagcag
gcccgagccgtggggctgactggcactttccgtgccttcctgtcctccaggctgcaggac
ctctacagtatcgtgcgccgggctgaccgtgggtctctgcccattgtcaacctgaaggac
gaggtgctatctcccagctgggacgccctattttctggctcccagggtcaactgcagccc
ggggcccgcatcttttctttcgacggccgagacgtcctgagacacccagcctggcctcag
aagagtgtatggcatggctcagaccccagcgggcgcaggctgatggagagctactgtgag
acatggcggaccgaggctagcggggtcacaggtcaggcctcctcactgctgtcaggcagg
ctgctggaacagaaagctgccagctgccacaacacctacatcgtcctgtgcattgagaac
agtttcatgacctctttctccaagtag
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