Peromyscus leucopus (white-footed mouse): 114696733
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Entry
114696733 CDS
T07241
Symbol
Pdcd11
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pleu03009
]
114696733 (Pdcd11)
Ribosome biogenesis [BR:
pleu03009
]
Eukaryotic type
90S particles
Other 90S particles
114696733 (Pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
Spt6_S1
HAT_PRP39_C
OB_RRP5_4th
HAT_Syf1_CNRKL1_C
OB_RRP5
Suf
TPR_14
TPR_19
ARM_TT21
TRAM
UTP6_C
ARM_TT21_N
TPR_CcmH_CycH
DUF2110
TPR_15
DUF7017
ARM_TT21_5th
NRDE-2
Motif
Other DBs
NCBI-GeneID:
114696733
NCBI-ProteinID:
XP_028730499
LinkDB
All DBs
Position
1:complement(40614418..40659794)
Genome browser
AA seq
1874 aa
AA seq
DB search
MANLEESFPRGGTRKSHKAEKPSQQAAEPDNLFDISTEEKSTKRKKSQKGPAKTKKLRTE
KREASKSGREKFEILSIGSLCEGVRILGCVKEVNELELVISLPNGLQGFVQVTDICDAYT
QKLNEQVAQGEPLEDLLRLPDLFSPGMLVRCVVSSLDITEKGKKNVRLSVNPKHVNKVLS
AEALRPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLSLQKAQEYIRQKNKGAKLKVGQYLT
CLVEEVKSNGGVVGLSIEHSEISSAVATEEQSWNLNNLLPGLVVKAQVQKVTQFGLQLNF
LTFFTGLVDFMHLEPKKIGAYSSKQTVKACILCIHPRTRVVRLSLRPIFLQPGRPLTRIS
YQQLGAVLDNVPLQGFFEKAGATFRLKDGVLAYARLSHLSDSKKTFNAEAFKPGSTHKCR
IIDYSQMDELALLSLRKSVISAQFLRYHDIKTGMVIKGTVLAIRPFGILVKVGEQMRGLV
PPMHLADIVMKNPEKKYHLGDEVKCRVLLCDPEAKKLLMTLKKTLVTSKLPAITCYEDAK
PGLQTHGVIVRVKAYGCIVKFYNSVQGLVPKHELSDQHIADPEKVFYTGQVVKVAVLNCE
PSKERMLLSFKLLNDSEPKNESVENSQKKGRAVNIGQLVDVKVLEKTKDGLEVAILPHNI
PAFLPTPHLSDHVANGPLLHHWLQAGDTLHRVLCLSQGEKHILLCRKPALVSTVEGGQDP
KSLSEVQPGMLLIGFVKSIKDYGVFVQFPSGLNGLAPKAIMSDKFVTTPSDHFVVGQTVV
AKVTNVDEEKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGVRSLMSNQDSVLTQTL
AEMTPGMVLDVVVQEVLEDGSVVFSGGPVPDLILKASRYHRAGQEVESGQKRRVVVLHVD
MLKLEVHVSLHXDLVNRKARKLRKSSRHQGIVQHLEESFGVASLMETGHLVAFSLTSHLN
DTFHFDSEKLQVGQGVCLTLKTTEPGVTGLILAVEGPASKRTSRPARRDSETVDDKEEEE
DTDLTVRTKKKHGLAIGDKVTGTIKSVKATHVVVTLEDGIMGCIHASRILDEVPVGTTPT
TTLKVGEKVTARVIGGRDVKTSKFLPISHPRFVLTILELSIRPSDLKKDGYSALNTHSVS
PVEKTEQYQAGQTVTCFFKKYNAIKKWLEVEVAPDIRGRIPLLLTSLSFKVLKHPDKKFQ
IGQALRATVVDSDVPKAFLCLSLIGPYRLEQGEIVMGRVLSVVPNKGLTISFPFGKIGKV
SLFHVSDSYSEALLEDFFPQKIVRCYVLSTEDRVLALSLRSSRTNKETKSKIQDPEINSI
QDIKEGQLLRGYVKSVLSDGVLVSLGPSVVGLARYSHVSPCGPPKKDLCDRYLPKGKLIT
AKILRVNPERSRVELSLLPSDTGKPDMFSASPEPPLLNREERKEGSEERDLKGEEKKRQK
RKEKNQKGQEEAELSSQEKKEPQKSQRSRQGKRERQEPAREQERVNKRPKKSGAPEEDDS
GVDVYYREGEDEMEQPGVLPKGQQTKPAEVPRLQLSSGFIWDVGLDSLTPALPLRGESSD
SEEEEEEPRQAKKKKGKKERELEKQKAEKELSRLEEALMDPGRQPESADDFDRLVLSSPN
SSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSPESL
TKVFERALQYNEPLKVFLHLADIYTKSEKFKEAGELYNRMLKRFRQEKAVWIKYGAFVLG
RSQAGASHRVLQRALECLPTKEHVDVLAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDV
WSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAK
ALEYVEAKSSGLED
NT seq
5625 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacctggaagaaagcttcccccgagggggcacaagaaaaagccacaaagcagag
aaaccttcacagcaggcagctgaaccagacaacttatttgatatttccacagaagaaaaa
tccactaaaaggaagaagagccagaaagggcctgcaaaaacaaagaaactgagaaccgaa
aagagagaagccagcaaatctgggagagagaaatttgaaatcctcagcattgggtctcta
tgtgagggagtgcggattttgggttgtgtgaaagaggtgaatgagctggaactggtgatc
agtcttccaaacggcctccaaggatttgtgcaagtgactgacatctgtgatgcctacacc
cagaaattgaacgagcaggtggcacagggagagcctctggaggacctgctccgcttgcct
gacctgttctcacctggaatgttggtgagatgtgtggtgagcagcctggacatcacagag
aagggcaagaagaatgtcaggctttctgtgaaccccaaacatgtcaacaaagtgctgagt
gctgaggccctgaggcctggcatgctgctgacaggcacagtgtcaagcctggaagaccac
ggctacctggtggacattggtgttggtgggaccagagcttttctgtcactgcagaaagcc
caagaatacatccgacagaagaacaaaggtgctaagctcaaagtcggccagtacctgacc
tgtctggtggaagaggtgaaaagcaatggaggcgtcgtgggtctctctatagagcactcg
gagatttcttctgccgtcgcaaccgaggagcaaagctggaacctgaataacttgctgcca
gggctggtggtcaaagcccaggtgcagaaggtaactcagtttggactccagctaaatttc
cttacattcttcacgggcctggttgacttcatgcatctggagcccaagaaaattggagca
tattcttcaaagcaaacagtaaaagcctgcatcctctgcatccatcctcggaccagagtt
gtgcgactgagcctgcgtcccatcttcctgcagcctgggcgtccactcacccggatctct
taccaacagctgggggctgtgctggataatgttcctcttcagggttttttcgagaaggct
ggggccaccttcaggctgaaggatggggtcctggcctatgcccggctcagccatctctct
gattctaagaaaacattcaatgctgaggccttcaaaccagggagcactcacaagtgtagg
atcattgactacagccaaatggatgagctggccttgctctctctgcggaaatccgttatt
tcagctcagtttcttagatatcatgacatcaaaacagggatggtgataaagggtaccgtg
ctggccataaggccattcgggatactggtgaaggtgggtgagcaaatgagaggcctggta
cctcccatgcacctggctgacatcgtgatgaagaatccagagaagaagtaccacctcggg
gatgaggtcaagtgccgggttttgctctgtgaccctgaagccaagaagctgttaatgacc
ctgaagaaaacccttgttacatccaaactccctgccattacgtgctatgaggatgccaag
cctggcctgcagacgcatggtgttatcgtgagggtcaaggcctatggctgcattgtaaag
ttctacaacagtgtgcaggggctggtgcccaagcatgagctcagtgaccagcatatcgct
gaccctgagaaggtcttctatactggccaggtggtaaaggtggcagtattgaactgtgag
ccttccaaggagaggatgctcctgtccttcaaactgttgaatgattcagagccaaagaat
gagagtgtcgaaaacagtcagaagaaaggaagagctgttaacattgggcagttggtggat
gtgaaggttttggagaagaccaaagatggactggaggtggccatccttccccacaacatc
cctgctttcctccccacccctcacttgtcggaccatgtcgccaatggcccgctgttacat
cactggctccaggcaggcgacacccttcaccgagtgctgtgtctgagccagggtgagaaa
cacattcttctctgcaggaagccggctttggtctccacagtagaaggtggccaggacccc
aagagcctctcggaagtccagcctggaatgctgctcattggctttgtgaagagcatcaag
gactacggtgtgttcgtgcagttcccttcaggtctcaatggactggcccctaaagctatc
atgagtgacaagtttgtaaccactccaagtgaccacttcgtggtgggtcagacggtcgtt
gctaaggtgaccaatgtggacgaggagaagcaaaggatgctgttgtctctgcggctgtca
gactgcagtctgggggattcggccagcaccagcttcctcctcctgtgccagtgcctggaa
gagctgcagggtgttcgcagcctcatgagcaaccaagactctgtgttgacccagacgctg
gctgagatgaccccagggatggtccttgatgtggtggtacaagaggtgctggaagatggt
tcagtggtgttcagtgggggtcccgtgcctgacctgatcttgaaagccagcagataccat
cgggcagggcaggaggtggagtctgggcagaagaggagggttgtcgtcctgcatgtggac
atgctgaagttggaggtccatgtttcccttcacncagacttggtaaataggaaagctaga
aagctgaggaaaagcagtagacaccaaggcatcgtacaacacctggaggagtcctttggc
gtggcctccttgatggagactggccaccttgtagctttctccctgacctctcacctcaac
gacaccttccactttgactctgagaagctgcaagtgggacagggtgtctgccttaccctc
aagaccacagaaccaggagtgaccggtctgattttggctgtggaggggccagcttctaag
aggaccagtagaccagctcggagggattcagagacggttgatgacaaagaggaggaagag
gacacggatttgactgtgaggactaaaaagaagcatggcctggctattggggacaaagtc
actgggaccatcaagtctgtgaaggccacgcatgtcgtcgtgacgctagaagatggcatc
atgggctgtatccatgcctcccgcattctagacgaggttccagtgggcacgactcctaca
accacactaaaagtgggagagaaagtcactgcacgagtcatcgggggccgagatgtgaag
acctccaagtttctcccaataagtcaccccagatttgttctgaccatcttggagctgagc
attcggccaagtgacttgaagaaggatggctacagtgctctcaatactcactctgtgagc
cccgtggagaagactgagcagtaccaggccggccagaccgtgacttgcttcttcaagaag
tacaatgcgattaagaagtggctggaagtggaggttgcgccagacatccgagggagaatt
cctttgttgctcacctccctcagtttcaaggttctgaaacacccagacaagaagttccag
attgggcaggccctgagggccactgtggtcgactcagatgtccccaaggctttcttgtgc
ctatcactcataggtccttacagacttgaacaaggggaaatagtcatgggccgagtgtta
agtgtggtacccaacaagggactgaccatctccttcccctttgggaagatagggaaagtc
agtttgtttcatgtgagtgactcctactccgaggcactcctggaggacttctttccccag
aagattgtcagatgttatgtcctgtccacagaagaccgtgtgttggctttgtcattaaga
tcgtccaggacaaacaaagagacaaaaagtaaaatccaagacccagagattaactccatc
caggacatcaaggaagggcagctgctgaggggctatgtgaagtctgtcctgtccgacggt
gtgcttgtaagccttgggccttcagttgtgggtttggcccggtactcacatgtgtctccg
tgtggcccacccaagaaagacctttgtgaccgttacctccccaagggaaagctgatcact
gccaagatcctacgcgtgaaccccgagaggagccgagtagagctgtcactccttcccagc
gacactgggaagccggacatgttttctgcctccccagaaccacctcttctgaaccgagag
gagaggaaagaggggtctgaggagagggacctaaaaggagaagagaaaaagaggcagaaa
aggaaagagaagaaccagaaggggcaggaggaggcggagttgtccagccaggagaagaaa
gagccccagaagtcacagaggagcaggcaaggcaagcgtgagcgccaggagcctgcaagg
gagcaggaaagagtgaacaagaggcccaagaagtctggggcaccagaagaggacgacagt
ggtgtggacgtctattaccgcgagggagaggacgagatggagcagccgggggtgctgccc
aagggacagcagacaaagcccgcggaggtgccccggctgcagctctcttcaggcttcatt
tgggacgtggggctcgactctctgactccagccttgcccctccgaggagagagctcagac
agcgaggaggaggaggaggagccgcgccaagccaagaagaagaaaggcaagaaggagagg
gagctggagaagcagaaggcggagaaggagctgtcacgccttgaggaggccctcatggac
cccgggcggcagcctgagtctgcggatgactttgaccggctggtgttgagctctcctaac
agctccatcctgtggctgcagtacatggctttccacctgcaggccacagagattgagaag
gcccgagcggtagccgagagggccctgaagaccatctccttcagagaggaacaggaaaag
ctgaacgtgtgggtggcactgctgaacctcgaaaacatgtatggctctccggagtccctg
actaaggtcttcgagcgggctctgcagtacaatgagcctctcaaggttttcctgcatctg
gctgacatctacaccaagtcagagaagttcaaggaagctggtgagctgtacaaccggatg
ctgaagcgcttccggcaggagaaggctgtctggatcaaatacggtgcttttgttttgggg
aggagtcaggctggggccagtcaccgcgtgctgcagcgagccctggagtgtctgcccacc
aaggagcatgtggatgtgcttgccaagtttgcccagctagagttccagctgggggatgca
gagcgggctaaagccatttttgaaaacacactgagcacctacccaaaacgcacagatgtc
tggtcagtctacatcgacatgaccatcaagcatggcagccagaaggaagtcagggacatc
tttgaacgagttattcatctgagcctggcccctaagaggatgaagttcttcttcaagcgc
tacctggactacgagaaacagcatggcactgagaaggacgtgcaggcagtcaaggccaag
gccctggagtacgtggaggccaagagctcagggctggaggactag
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