Peromyscus leucopus (white-footed mouse): 114696914
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Entry
114696914 CDS
T07241
Symbol
Vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pleu04131
]
114696914 (Vps13a)
Membrane trafficking [BR:
pleu04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
114696914 (Vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
ATG2_CAD
RRM_fung
Mer2
Motif
Other DBs
NCBI-GeneID:
114696914
NCBI-ProteinID:
XP_028730708
LinkDB
All DBs
Position
1:complement(10256524..10478409)
Genome browser
AA seq
3170 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDGSQLSLGIWKGSVALKNLQIKENALSELDVPFKVKVG
HIGSLKLKIPWKNLYTQPVEAVLEEIYLLIVPSSRIKYDPIKEEKQLMEAKQQELKRIEE
AKQKVVDQENPLEEKQDTFTEKLITQIIKNLQVKISNIHVRYEDDITNQDKPLSFGISLQ
NLSMQTTDQNWIPCLHDETEKLVRKLIRLDNLFAYWNAKSQMYYLNDYDESLETLKNGIV
NENIVPEGYDFVFRPISANAKLQMNRRSDFDFSDPKINLEVELHTIVIEFNKPQYFSLME
LLESVDMMKQNLPYRKFKPDVPLHYHAKEWWAYAIHGILEVNVCPRLRMWSWKHIRDHRQ
KMKQYRELYKKKLTSKKPSPEILMSLEELEKTLDVFNITIARQQSEVEVKKAGYKIYKEG
VKDPEDNAGWFSWLWTWSDSNAKQPLEVKPGILEEMLTPEEKVLLYEAIGYSETAVDPTL
PKTFEASKLFVHLKSMSIVLRENHQKPELVDIVVEGLSTLIVQRPGAQSIKFETKIDSFH
ITGLPDNSKKPHLLSSLDDMSLFQITFETNPLDETVAQRCIIEAEPLEIIYDARTVNSIV
EFFRPPKDVHLEQLTSATLTKLEEFRDKTATGLLYIIETQKVLDLRINVKASYVIVPQSG
NFSPTSNLLLLDLGHLKVTSKSRSRLPEMKLSGASLEEIMHRAYDSFDIQLTSIQLLYSR
VGDNWKEARRLNVSTQHILTPMHVNIELSKAMVFMDVKMPKFKVSGKLPLVSLRISDKKF
KGIMELLESIPKPKPITDLPAPARSFQIQASTSLPVSQISQKLIPLLEQPSVAEDDSEEE
FFDALCSPLEENPQILSKFKSCRPKKLQKKDSSMNLIQLSMRFEVAEVLIQFYHLVGDCE
LPVLEMGVLGLGTEVEIRKFDLKANAFLKEFWLKCPEYLDENKKPVYLITTLDNTIEDLL
TLEFVRAEKNAPNLKCTYNNVLQLIKVNFSSLDIHLHTEALLNTMNYLNNILPQLEQQSA
PGSVAETEDKGDIIKKLALKLPTNEDIITLQLLAELSCLRIFIQDQKQNISEIKIEGLDS
EMIMKPLVTEINAKLRNIIVLDSDKMAVYKKAVYITGKEVFSFKMISYMDATAGSAYTDM
NVVDARVNLTVGCIEVVFVTKFLYAILDFIDNFQAVKNALAEATAQAAGMAADGVMELAG
RSARFALDVNIKAPVVLIPQSPVSRNVFVADFGLVTMKNTFVIVKETQSNLPPVIDLITI
KLSEMRLYRSQFMNDAYQEVLDLLLPLNLEVIVERNLSWEWYKEVPCFNVKGQLKPMEFI
LSQEDLTTIFQTLYGNIWYGRDDYASSSRNNDHEIVTSGAASVSYHSGAATVVTAAVVEV
HPQASQANMTINVSFRTDYLTMALYSPGPEQAFFTDVRDPSLKLAEFKLENIISSLKLYT
DGSMFSSFSLKNCILDDKRPHVMKATPRMIGLTLGFDKKDMVDVKYRSIRDTSVTDVVVQ
EMYICASVEFLMTVVHVFFDAYTTSTALETSVQTWTTKEAPVQDLGKWEMNILIKNPEIV
FVADMTRNDAPALVITTQCEICCKGDPESNTVTAAIKDLQVRACPFLPIKRKGKITTVLQ
PCDLFYQATQIGTDPQMIDISVKSLTLKVSPVIINTIITVTSALYTTKESIPEENTSSIT
HLWDKKDTKNLKMWFLEESNETEKVAPINELVPGGETLTLNIDSIFIVLEAGVGHRTVPM
LLAKSRVFGESKNWSTLINLYCQLELEVHYYNEMFGVWEPLLEPLEIDQTDDFKPWNLGI
KMKKKAKQSIVESDSEEENYKVPEYKTAIIFYSKDQLNITLSKCGLVMLNNLVEAFTEAA
TGSSAAFQRDLAPFMILNSLGLTVSVLPSDSFNVLNVPMAKSYELKNEESLSMDYVRTKD
SDHFNAMTSLSSKLFFILLTPDNHSTADKIPLTKVGRRLYTVRHRESGVERSIVCQIDTF
EGSKKVTIRSPVQIKNHFSIPISIFEGDTLLGIASPENEFNIPLSSYRSSLSLKPEDEDY
QMCEGIDFEEIIKYDGQLLKKKCRSIHPSKKSFVINIVPEKDNLTSLSVYSEDGWDLPYV
MHLWPPILIRNLLPYRIAYYLEGIENTVFTLSEGHSSQIYNVQMDNAKLYLKLLDYLNHD
WKSEFQIKANQQDINFINFTCLTEMEKTDLDIAVHMTYNTGQTIVAFHSPYWMVNKTERM
LQYKADGIHRKHPPNYKKPVLFSFQPNHFFNNNKVQLMVTDSELSDQFSIDTVGSHGAIK
CKGLKMEYQVGVTINLSSFNITRIVIFTPFYMIKNKSKYRISVAEEGSDKWFSLDLEQCI
PFWPENASNILLIRVERSEGPPKRIHFNKQDSCILLRLNNELGGIIAEVNLAEHSTVITF
SDYHDGAATFLLINHTKNDLVQYKQSSLSEIEDSLPPGKAVYYTWADPVGSRKLKWSCGQ
SHGEVTHKDDMMTPISVGTKVIYLVSFFEGLQRIILFTEDPKVFKVTYESEKAELAEQEI
VLALQDVGISLVNNYTKQEVAYIGITSSDVVWETKPKKKARWRPMSVKHNEKLEKELKEY
LESSPLEDKVIELDSNIPVRLTPSGNDMKILQPHEIPLRRNYLPALKVEYNTSAHQSSFR
IQIYRIQIQNQIHGAIFPFVFYPVKPPKSVTMDSAPKPFTDVSIVMRSAGHSQISRIKYF
KVLIQEMDLRLDLGFVYAIADLVTKAEVTETTEVEYFHKDVETFEQEYETVSSVDQSQIN
LFEYFHISPIKLHLSVSLSSGREEAKDSGQRGGLIPVHSLNLLLKSIGATLTDVQDVVFK
LAFFELNYQFRTTSELQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEGVEAFF
YEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQK
RREAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIRGAQKEGAAGFFKGVGKGLVG
AVARPTGGIIDMASSTFQGIKRATETSEVESLRPPRFFNEDGVIRPYRLRDGTGNQMLQV
MENGRFAKYKYFTHVMINKTDMFMITRRGVLFVTKGTFGQLTCEWQYSFDEFTKEPFIVH
GRRLRIEAKERVKSVFHAKEFGKIINFKTPEDARWILTKLEEAREPSPSL
NT seq
9513 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgagtcgttggtcgtggacgtgctgaaccggttcttgggggactatgtggtg
aacctggacgggtctcagctctcgctgggcatctggaaaggctctgtggccctcaagaat
cttcaaattaaagaaaatgcattgagtgaactggatgtaccattcaaagttaaggttggt
catataggtagtcttaaacttaaaattccatggaaaaacctttatactcaaccagttgaa
gctgttttggaagaaatctatttactgatagtgccttcttctagaataaaatatgatccc
atcaaagaagaaaagcaactaatggaagcaaagcaacaggaactaaaaagaatagaagaa
gcaaaacagaaagtagttgatcaagaaaatcctctggaggagaaacaggacacttttaca
gaaaaattaattactcaaatcataaaaaaccttcaagtgaaaatttccaatatccatgtt
cgttatgaagatgatatcacaaatcaagacaaaccactctcatttggtatttcccttcaa
aatctcagcatgcagacaactgatcaaaactggattccatgtttacatgatgaaactgag
aaactagttcggaagctaatccggttagataatctctttgcttactggaatgcgaagtct
cagatgtattatctgaatgattatgatgaatcattggaaaccttgaaaaatggtattgtc
aatgaaaatattgttccagaaggttatgattttgtttttcgacctatatctgctaatgcc
aaacttcagatgaaccgtcgatcagattttgacttttctgaccccaaaataaacctggag
gttgagttacataccatagtgattgagtttaataaaccacagtatttcagtctcatggag
cttctcgagtcagttgacatgatgaaacaaaacctgccatacagaaaattcaagcccgat
gtgcctcttcactaccatgctaaagaatggtgggcttatgctatacacggtattcttgaa
gtaaatgtctgtcctcgtttacggatgtggtcatggaagcatattagagaccatagacag
aaaatgaaacaatatagagaattgtataagaaaaagttaacaagtaagaagccatctcct
gaaattctcatgtctttggaggagttggagaaaaccttggatgtttttaatataaccata
gctagacaacagtcagaagttgaggtaaagaaagctggatacaagatttacaaagaagga
gtaaaagatccagaggataatgcaggatggtttagctggctgtggacttggtcagattca
aatgctaaacaaccactagaagttaaacctggaattcttgaagaaatgttgacacctgaa
gaaaaggttttactttatgaagcaattggttatagtgaaacagctgttgatccaaccttg
ccgaaaacatttgaagcctcgaagctttttgttcacttgaaaagtatgtctattgttctg
agagaaaatcaccaaaagccagagctggtagacattgtagtagaaggccttagtactttg
attgtgcaaagaccaggagcacaatccataaaatttgaaaccaagattgattcatttcat
attactggtttaccagataattcaaaaaaaccccacctactgtcttcattggatgatatg
tcactcttccagattacattcgaaacaaatcctttagatgaaaccgttgctcagaggtgc
atcatagaggctgaacctttagagataatttatgatgcaaggacagtcaatagtatagtg
gaattcttcagacctccaaaagatgtccacctagaacaactcacttcagcaactttgaca
aaacttgaagaatttagagataaaacagcaacaggtttgctgtatattattgaaacacag
aaagttcttgatctcagaattaatgtgaaggcttcatatgttattgtaccacaatctggg
aattttagccctacatcaaatttacttctcttggatcttggtcatttaaaggtgacaagt
aaaagtcgatcaagattaccagaaatgaagctaagtggggccagccttgaagagataatg
catagagcttatgattcttttgatattcagcttacaagcatacaattgctttacagcaga
gtgggtgataattggaaagaagcacgaaggctcaatgtatctacacagcatattttgaca
cctatgcatgtcaatatagaactctctaaagccatggttttcatggatgtcaagatgccc
aaattcaaagtttctggaaaattacctcttgtttcgttacgaatctcggataaaaaattt
aaagggattatggaattgttggaaagcattccaaaacctaaacccataactgatctacct
gcccctgccagatcattccagattcaagcatctacttctttgccagtatcacagatttct
cagaagttaatccctttattggaacagccttctgttgctgaagatgactcagaagaggaa
ttttttgatgcactctgtagtcctttggaagagaatcctcaaattctatctaaatttaaa
agttgtcgacctaaaaaattacaaaagaaagatagttcaatgaatttaattcaactttcc
atgcggtttgaagtagcagaggttttgattcaattttatcaccttgtgggagactgtgaa
ctacccgtgctagaaatgggtgttttaggattgggtacagaagttgagattagaaaattt
gatttgaaagcaaatgcctttttgaaggagttctggttaaaatgtccagaatacttagat
gaaaacaagaaaccagtttatttgatcaccaccctggataacacaattgaggatttgtta
acattggaatttgtgagggctgaaaaaaacgcacccaatttgaaatgtacctataacaat
gttttacaacttattaaggttaatttttcctctttggatattcatttacacactgaagca
cttctcaatacaatgaattatcttaataatatccttccacaattagagcaacaatctgcc
ccagggtctgttgcagagactgaagacaaaggagatatcattaaaaaacttgctttaaag
ctacccacgaatgaagatattattaccttgcagcttttggcagaattatcttgtttgcgg
atttttattcaggatcagaaacaaaacatttctgaaattaagattgaagggcttgattct
gagatgattatgaagccattagtcactgaaataaatgcaaaactaaggaatataattgtg
ttagattctgataaaatggctgtatacaaaaaggctgtttatatcactggaaaagaagtt
ttcagcttcaaaatgatttcttacatggatgcaactgctggctctgcatacacagatatg
aatgtggttgatgctcgagttaatttaactgttggttgcattgaagttgtgtttgtcaca
aaatttctatatgcaatattggattttatagataattttcaagcagttaaaaatgccttg
gctgaagcaactgctcaagcagcaggaatggctgctgatggtgtaatggaactggctgga
agaagtgcaaggtttgcattggatgttaacataaaagctcctgttgtgctcatcccacag
tctccagtgtctcggaatgtttttgttgctgattttggattagttacaatgaaaaataca
tttgttattgtaaaagaaacccagagtaatctcccacctgtaattgatttgataacaata
aagttgagtgaaatgagactatacaggtctcagtttatgaatgatgcataccaggaagta
ctagacctgctactacctttgaacctggaagtgattgttgaacgcaacttatcctgggaa
tggtacaaggaagttccttgttttaatgtaaaaggccagctaaaacccatggagttcatt
cttagtcaagaagatttaacaaccatctttcaaacattgtatggcaatatatggtatgga
cgagatgattatgcctcatcttctagaaataatgaccatgagatcgtgactagtggagct
gccagtgtttcctaccattcaggagcagctactgtggtgacagctgctgtggtagaggta
cacccacaggcttctcaagctaatatgacaattaacgtgagtttcagaactgattatctt
actatggcactttacagtccagggcctgaacaggccttctttacagatgtccgtgatcct
tctctaaaacttgctgaatttaaattggagaatatcataagtagtttaaaattgtataca
gatggttctatgttttcttctttctcattaaaaaactgtattttagatgacaaaaggcct
catgtcatgaaagccactcctagaatgataggactgacacttgggtttgacaaaaaggac
atggtggatgtaaagtatagaagcatcagagatacttctgtgactgatgtagttgtccaa
gagatgtatatttgtgcaagtgtggagtttctgatgactgttgtacatgtcttttttgat
gcctacacaactagtacggctttagaaaccagtgttcaaacatggactactaaagaagca
cctgtacaggatttagggaagtgggaaatgaatattcttataaaaaaccctgagattgtg
tttgtggctgacatgacaagaaatgatgctcctgccttagtcattacaacacagtgtgaa
atttgctgtaaaggtgaccctgaaagcaatacagtgactgctgccattaaagatctccaa
gtcagagcatgcccatttcttccaatcaagagaaaggggaaaatcaccactgttttgcag
ccttgtgacttgttttatcaggctactcagataggaacagatccacaaatgattgacata
tcagtaaaatctcttacactaaaggtttcaccagtaatcataaataccataataactgtt
acttctgcactttatacaactaaggaaagcatcccagaagaaaacacttcttctataaca
catttatgggacaagaaggatactaagaatctgaaaatgtggtttcttgaagaatcaaat
gaaacagaaaaagtagctcccataaatgaattggtgccaggaggagagacactgacctta
aatattgattctatttttatagttcttgaagctggagttggtcatagaacagtgccgatg
ctattggcaaagtcacgtgtttttggggaaagcaaaaactggagtactttaataaatctc
tattgtcagcttgagctggaagttcactattataatgaaatgtttggtgtttgggaacct
ttactagaacccttagaaattgatcagactgatgattttaaaccatggaatcttggaatc
aagatgaaaaagaaagcaaaacagtccattgttgagtcagatagtgaagaagaaaactac
aaagtaccagaatacaaaactgccataattttttattctaaggaccaattaaacattaca
ttatccaaatgtggccttgtgatgttaaataatttagtcgaggcatttacggaagctgct
actggatcttcagctgccttccaaagggatctagcaccgtttatgattttaaattctctt
ggacttactgtctctgttttaccaagtgattcttttaatgtactcaatgttcctatggca
aaatcatatgaactgaaaaatgaagagagtttaagtatggattatgtacgaactaaggac
agtgatcatttcaatgcaatgaccagcctaagcagcaaactcttcttcattctccttaca
cctgataaccactctactgctgacaagatccctttaacaaaggtaggacggcgcctgtac
acagtgagacacagagagtctggagttgaaagatctatcgtttgtcaaattgacacattt
gaaggaagtaagaaggtaacaatccgctcaccagtgcagattaagaatcatttttcaatc
ccaatttccatttttgaaggggatactttattgggaattgcctcacctgaaaatgaattc
aacataccattatcatcttaccgatcatccctttctttgaagccagaagatgaagactac
cagatgtgtgaaggaattgactttgaagaaatcataaaatatgatggacaacttctaaag
aagaaatgtagatctatacatccttctaaaaaatcatttgttattaatattgtcccagaa
aaagataatttgacttctctgtcagtgtattcagaagacggatgggacttaccatatgta
atgcacttgtggccacctattctcattcgcaatcttcttccctacagaattgcttattac
ttagagggcattgaaaacacagtttttactctaagtgaaggacattcatcacagatttat
aatgttcaaatggacaatgccaagctatacttaaaattgcttgactatcttaatcatgat
tggaaaagtgaatttcaaataaaagctaatcaacaggacatcaattttatcaactttacc
tgtctcacagaaatggaaaagactgatttggatattgcagtccatatgacttacaatact
ggtcagacaattgtggcatttcatagtccatattggatggtcaataaaactgaacgaatg
ttacaatacaaagcagatggaatccaccgaaaacatccacccaattataaaaagccagtt
ctcttttcctttcagccaaatcacttttttaacaacaataaggttcagcttatggtaact
gatagtgagctctctgatcagttttcaattgatactgttggtagtcatggagccattaaa
tgcaaaggcctgaaaatggaataccaagttggtgtcactataaacctcagcagttttaac
attaccagaattgtgatatttactcctttttatatgattaaaaacaaaagcaaataccgt
atatcagtggcagaagaaggaagtgataaatggttctctcttgacttagagcagtgtatc
cccttttggcctgagaatgcctccaatattcttcttattcgagttgaaaggagtgaaggt
cctcccaaaaggatacattttaacaagcaagacagttgtattttattgcgtctgaataat
gagcttggaggaattattgcagaagttaatttggctgagcactctacagttattacgttt
tcagattaccatgatggtgcagctacattcctactaataaatcataccaagaatgacctt
gttcagtacaagcaaagttctctcagtgaaatagaagattcccttcctcctggaaaagcg
gtttattatacatgggctgatccagtgggctctagaaagctgaaatggagttgtgggcaa
agccatggtgaagtaacacataaggatgatatgatgacacctataagtgtggggacgaaa
gtcatttatttagtgtcattctttgaaggcttgcagcgtattattttattcactgaagat
ccaaaagtgtttaaagtaacatatgaaagtgaaaaggcagagttagcagagcaagaaatt
gtattggctttacaagatgttggaatttcacttgtcaataattacaccaagcaagaagta
gcctatataggcattacaagttctgatgtggtttgggagacaaaaccaaagaaaaaggca
aggtggagaccaatgagtgtaaaacacaatgagaagctggagaaggaattgaaggaatac
ctggagtcttcaccattggaagacaaggttattgagctggacagtaacattccggttcgc
ttaacacctagtggcaatgatatgaaaattctgcaaccacatgagatacctttacggaga
aattatctcccagcactaaaagtagagtataacacatctgcacaccagtcatcattcaga
attcagatttatagaatacagatccagaaccagattcatggtgctatttttcctttcgtg
ttttaccctgttaaacctccaaagtctgtcaccatggattcagcaccaaagccctttaca
gatgttagtattgtcatgagatctgcaggacattcccaaatatcacgcattaagtatttc
aaagtgttgattcaagaaatggatctcagattggatcttggatttgtatatgccatagca
gatcttgtcactaaagccgaggtgactgagacaacagaggttgaatattttcataaagat
gtagaaacatttgaacaagagtatgaaacagtttcatcagtagatcaatctcaaatcaat
ctctttgaatattttcatatatctcctatcaagttgcatttgagtgtttcactgagctct
ggtagagaagaagctaaagattcaggacaacgtggaggactaattcctgttcattcttta
aatcttttactgaagagtattggtgccacccttacagatgtacaagatgtagtttttaag
cttgccttttttgaactcaactaccagttccgtacaacttctgaactacaatctgaagta
ataagacactattcaaaacaagctattaagcaaatgtatgtgctcattcttggacttgat
gttttgggaaatccctttggcttaattagagaattttcagaaggtgtggaagcatttttt
tatgaaccttaccagggggccatccaggggcctgaagagtttgtggagggaatggcacta
ggactgaaagcattggtcggcggagccgttggtgggctagctggtgctgcctccaaaatc
accagtgctatggcgaaaggggtagcagccatgacgatggatgaagactaccagcagaag
agaagagaagcaatgaataagcaaccagctggccttagagaaggcatcactcgtggagga
aaaggcctggtttctggttttgtaagtggcattacagggattgttacaaaaccaattaga
ggtgctcaaaaggaaggagcagcaggtttcttcaaaggtgtcgggaaaggtttagttgga
gcagtggccaggccaacgggtggcatcatagacatggccagcagtacctttcagggaatc
aaaagagctacagagacttctgaagtagaaagtctgcgaccgccccggttctttaatgaa
gatggagttatccgaccttacagactaagggatggtacaggaaatcaaatgttacaggtc
atggaaaatggaagatttgcaaaatacaagtattttacccatgtcatgatcaataaaaca
gatatgttcatgataacaagacgtggtgtgttgtttgtaacaaagggaacatttggacag
cttacgtgtgaatggcagtatagttttgatgaatttaccaaagagccattcattgtccat
gggagaagattgcgcattgaagcaaaggaacgggtgaaatctgtattccatgccaaagaa
tttggaaaaataattaacttcaagactccagaggatgctaggtggatccttacaaagctg
gaagaagcaagagaaccgtctccgagcctctga
DBGET
integrated database retrieval system
