Peromyscus leucopus (white-footed mouse): 114697614
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Entry
114697614 CDS
T07241
Symbol
Prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114697614 (Prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pleu03041
]
114697614 (Prpf40a)
Spliceosome [BR:
pleu03041
]
Complex A
U1 snRNP components
U1 related factors
114697614 (Prpf40a)
Complex B
114697614 (Prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
114697614
NCBI-ProteinID:
XP_028731755
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All DBs
Position
4:complement(30828943..30878450)
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AA seq
972 aa
AA seq
DB search
MCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMESQPPSRGPGDGERRLSGSNLCSSSWVS
ADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMS
SVMSGMMMSHMSQASMQPALPPGVNSMDVAAGAASGAKSMWTEHKSPDGRTYYYNTETKQ
STWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTI
VAGGLITKSNLHAMIKAEESSKQEECTTTSTAPVPTTEIPTTMSTMAAAEAAAAVVAAAA
AAAAAANANTSTTPTNTVGSVPVAPEPEVTSIVPAVVDNENAVTISNDEQAQIANATAIQ
DLSGDISSNTGEEPSKQETVTDFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRV
PSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQR
FLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKR
NWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALE
KEEEEEKQKTLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNM
LGQPVFSLGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISS
TKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQAAPPIELDA
VWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKR
SRSRSGSDSDDDDSHSKKKRQRSESHSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDS
PESDTEREKDKKDKDRESEKDRSRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKR
RRTLLEQLDDDQ
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgtgtagcggcagtggccgccgacggagcagtctgagcccgacgatgaggccggggact
ggagccgagcgtggaggcctcatggtgagtgaaatggagagccaacctccctcgcggggt
cccggggacggggagcggagattgtccggctcaaacctgtgctccagttcttgggtctct
gctgacggcttcctgaggagacggccctcgatggggcatcctggcatgcattacgcacca
atgggaatgcaccctatgggccagagagcaaacatgcctcctgtacctcatggaatgatg
ccgcagatgatgccccctatgggagggcctccaatgggacaaatgcctggaatgatgtct
tctgtaatgtcaggaatgatgatgtctcatatgtctcaggcttccatgcaacctgcctta
ccgcctggagtaaatagtatggatgtagcagcaggtgcagcatctggtgcaaaatcaatg
tggacagaacataaatcacccgatggaaggacttattattacaatactgaaacaaaacag
tctacctgggaaaaaccagatgatcttaaaacacctgctgagcaactcttgtctaaatgc
ccgtggaaagagtacaaatctgattctgggaagccttattactataattctcaaacgaaa
gagtcccgctgggccaaaccaaaggaacttgaggatcttgaaggataccagaataccatt
gttgctggaggtcttattacaaaatcaaacctgcatgctatgatcaaagctgaagaaagc
agcaagcaagaagaatgtactactacatcaacagccccagttcctacaacagaaattcct
accactatgagcaccatggctgctgcagaagcagcagctgctgttgttgctgctgctgca
gccgctgcagcagctgctaatgccaatacttccaccacacctactaatactgtgggaagt
gttccagttgctcctgagcctgaagttacttccattgttcctgctgttgtcgataatgaa
aatgcagtaactatatctaatgacgaacaagcacagattgctaatgccacagccattcaa
gatttaagtggtgacatttccagcaacactggagaggaaccatctaaacaagaaactgta
accgattttactcctaaaaaagaagaggaagagagccaaccagcaaaaaaaacatacact
tggaatacaaaggaggaggcaaagcaagcatttaaagaattattgaaagaaaagcgggta
ccctctaatgcttcgtgggagcaagctatgaaaatgatcattaatgatcctcggtatagt
gctttagcaaagctgagtgaaaaaaagcaggcttttaatgcctataaagtccagacggag
aaagaggaaaaagaagaagcaagatcaaaatacaaagaagctaaggaatcttttcagcgt
tttcttgaaaatcatgagaaaatgacttccacaaccagatacaaaaaagccgagcaaatg
tttggggagatggaagtttggaatgctatatcagagcgtgatcgtcttgaaatctatgaa
gatgttttgttcttcctttcaaaaaaagaaaaggaacaagcaaagcagttacgaaagaga
aattgggaagccttaaaaaacatacttgacaacatggctaatgtcacgtattctactact
tggtctgaagcccagcagtatctgatggataatccaacgtttgcagaggatgaagagtta
cagaacatggataaagaagatgcactaatatgctttgaggaacacatccgggctttagaa
aaggaagaagaagaagaaaaacagaagactttgttgagagaaaggaggcggcagcgtaaa
aatagggaatcttttcagatattcttagatgaactacatgaacatggacaactacattct
atgtcctcttggatggaactgtatccaactattagttctgacattagattcactaatatg
ctcggtcagccggttttttcattaggatcaactgcacttgatcttttcaagttttatgtt
gaagatcttaaagcacgttatcatgacgaaaaaaagataataaaagacattctgaaggat
aaaggatttgtagttgaagtaaacaccacttttgaagattttgtggcaataataagttca
acaaaaagatcaactactttggatgctggaaatatcaagttggccttcaatagtttacta
gaaaaggcagaagcccgtgaacgtgaaagagaaaaagaggaagcacgaaaaatgaaaaga
aaagagtctgcatttaagagtatgttgaaacaggctgctcctccaatagagctggatgct
gtctgggaagacatccgggagagatttgtaaaagaaccagcatttgaagacataactcta
gaatctgaaagaaaaagaatatttaaagatttcatgcatgtgcttgagcatgaatgtcaa
catcatcattcaaagaacaagaaacattctaagaaatctaaaaaacaccataggaaacgc
tcccgctctcgatcgggatcagattcagatgatgatgatagccattcaaagaaaaaaaga
cagcgatcagagtcccattctgcttcagaacattcttctagtgctgaatctgagagaagt
tataagaaatcaaaaaagcataagaagaaaagcaaaaagaggagacataaatctgactct
ccagaatcagatactgaacgagagaaggataagaaagataaagatcgggaaagtgaaaaa
gacagaagtagacagagatcagaatcaaaacacaaatcacctaagaaaaagactggaaag
gattctggtaactgggatacttctggcagtgaactgagtgaaggggaattagaaaagcgc
agaagaacccttttggagcaactggatgatgatcaataa
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